 John Chilton
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997e7114be
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More correct tool creation in tools_support.
Now supports creating tool subclasses based on tool source.
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2017-08-08 08:26:14 -04:00 |
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John Chilton
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210d3e31ab
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Refactor to clean up args in one method of galaxy.tools.
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2017-08-08 08:26:12 -04:00 |
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mvdbeek
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a77c4587fb
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Shorten 'Minimum required Galaxy version' to 'Minimum Galaxy Version'
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2017-08-08 13:09:56 +02:00 |
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mvdbeek
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20f90254bf
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Show minimum required galaxy version in tool shed and galaxy installation process
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2017-08-08 12:18:52 +02:00 |
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Björn Grüning
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eb8f7f0da3
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remove debug statement
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2017-08-08 11:39:34 +02:00 |
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Björn Grüning
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338fffad0b
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Remove user_preferences_extra_conf.yml sample file from the default list
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2017-08-08 10:32:12 +02:00 |
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Björn Grüning
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a06ec3e58d
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change xml to yml
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2017-08-08 10:10:39 +02:00 |
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guerler
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5a8adbf8b7
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Merge branch 'remove_duplicates' into admin_grid_roles
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2017-08-07 22:47:39 -04:00 |
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guerler
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4b2eca373e
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Remove duplicate roles from selection list
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2017-08-07 22:46:10 -04:00 |
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guerler
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c49e749534
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Fix user info link for toolshed
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2017-08-07 22:02:50 -04:00 |
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guerler
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419f3db64f
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Remove unused information feature for toolshed
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2017-08-07 20:52:41 -04:00 |
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guerler
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e77fd47b03
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Fix boolean handling
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2017-08-07 20:45:13 -04:00 |
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guerler
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663c6c1397
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Fix boolean title, and move unused role makos to toolshed
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2017-08-07 20:43:07 -04:00 |
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guerler
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183176a05c
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Add create role form
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2017-08-07 20:35:53 -04:00 |
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guerler
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9ee062bd46
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Show current name and description when renaming roles
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2017-08-07 20:14:00 -04:00 |
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guerler
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d698d32ceb
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Manage users and groups for role
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2017-08-07 20:11:11 -04:00 |
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Martin Cech
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d2394aa172
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Merge pull request #4198 from fabio-cumbo/data-source-async
Async update: support to collections
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2017-08-07 17:52:58 -04:00 |
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mvdbeek
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ed67b11751
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Use with statement in VcfGz class
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2017-08-07 23:39:57 +02:00 |
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Björn Grüning
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6e37bc05c1
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Merge pull request #4382 from mvdbeek/enforce_tool_profiles
Stop loading tools that require a newer galaxy
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2017-08-07 22:24:48 +02:00 |
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John Chilton
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061eb25640
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Add comment about fix for #4381.
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2017-08-07 15:36:37 -04:00 |
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John Chilton
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5be7768047
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Merge pull request #4326 from mvdbeek/history_import_from_file
Allow import of history archives via simple file upload
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2017-08-07 15:21:17 -04:00 |
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John Chilton
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31f68edbba
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Merge pull request #4358 from mvdbeek/paramiko_based_shell_runner
Paramiko based shell runner
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2017-08-07 15:15:42 -04:00 |
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John Chilton
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aa29b3a1a1
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Fix job splitting so it happens before dependency resolution?
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2017-08-07 15:02:06 -04:00 |
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mvdbeek
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b19640b81a
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Stop loading tools that require a newer galaxy
We look at a tools profile attribute, and if it is too new we will not
load the tool. This is a first step towards
https://github.com/galaxyproject/galaxy/issues/2086
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2017-08-07 18:53:25 +02:00 |
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Bjoern Gruening
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03bbbe96a9
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fix linting error
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2017-08-07 18:17:04 +02:00 |
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Bjoern Gruening
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dc9c71f757
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rename the config files from XML to YML
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2017-08-07 15:57:01 +02:00 |
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Bjoern Gruening
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1ca8f2c927
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use yml instead of XML and reorder the preference panels
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2017-08-07 15:56:40 +02:00 |
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Bjoern Gruening
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4aa8d631d9
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register user_preference config file
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2017-08-07 15:14:45 +02:00 |
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Bjoern Gruening
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045039da95
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merge with master, address Aysams comments
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2017-08-07 14:52:32 +02:00 |
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Bjoern Gruening
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94b2184f89
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merge with master
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2017-08-07 14:52:27 +02:00 |
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John Chilton
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e92a15a185
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Merge pull request #4368 from mvdbeek/tie_down_collection_matcher
Implement default_identifier_source for outputs and sort input keys by default
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2017-08-07 07:45:37 -04:00 |
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John Chilton
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3f270e91af
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Merge pull request #4315 from jlhg/fix-s3mu-map-wrap
Fix TypeError when uploading large files from ftp to s3
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2017-08-07 07:35:01 -04:00 |
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guerler
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f531d2c0c9
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Repack scripts
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2017-08-05 22:23:05 -04:00 |
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guerler
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1675b9cca2
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Merge branch 'revise_grid_forms' into admin_grid_roles
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2017-08-05 12:08:48 -04:00 |
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guerler
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9d8bdc6f30
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Repack scripts
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2017-08-05 12:06:54 -04:00 |
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guerler
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d2d250b847
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Merge branch 'dev' into revise_grid_forms
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2017-08-05 11:59:59 -04:00 |
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Eric Rasche
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4effd7d77a
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Merge pull request #4365 from jmchilton/csrf
CSRF protection for login, logout, and user registration.
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2017-08-05 08:27:57 +02:00 |
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guerler
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9dc5ace31a
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Remove lines
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2017-08-04 19:28:06 -04:00 |
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guerler
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d11fc568a4
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Merge branch 'revise_grid_forms' into admin_grid_roles
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2017-08-04 16:49:36 -04:00 |
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guerler
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96cc67a2ca
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Fix lint
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2017-08-04 16:49:02 -04:00 |
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guerler
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4d542820e7
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Remove unused messages, set default message status
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2017-08-04 14:59:45 -04:00 |
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guerler
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20ce574e33
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Add role renaming feature to revised endpoint
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2017-08-04 14:27:22 -04:00 |
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guerler
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010a7dfb9c
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Remove unused toolshed grid mako
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2017-08-04 14:22:19 -04:00 |
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guerler
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c2b98bce78
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Remove unused grid makos
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2017-08-04 14:20:58 -04:00 |
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guerler
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246e94ae84
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Build role renaming in client
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2017-08-04 14:17:43 -04:00 |
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guerler
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ffe3ac294d
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Do not parse empty messages
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2017-08-04 14:01:43 -04:00 |
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guerler
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77608ac410
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Merge branch 'revise_grid_forms' into admin_grid_roles
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2017-08-04 13:55:27 -04:00 |
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guerler
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146dd82f04
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Remove unnecessary grid makos
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2017-08-04 13:44:37 -04:00 |
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guerler
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e791ac29bb
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Move user form grid makos to toolshed
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2017-08-04 13:29:36 -04:00 |
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guerler
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63ebee1a41
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Add put handling to revised manage_roles_and_groups_for_user controller endpoint
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2017-08-04 13:16:25 -04:00 |
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