 mvdbeek
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8ff70c0bf5
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Add script that builds all packages
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2022-12-08 14:57:04 +01:00 |
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mvdbeek
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9c92c55a31
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Reset all package HISTORY.rst file to 22.5.0.dev0
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2022-12-08 13:24:06 +01:00 |
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mvdbeek
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fa21013dbe
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Merge branch 'release_22.01' into release_22.05
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2022-12-08 12:35:37 +01:00 |
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mvdbeek
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4523cf9702
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Bump to next dev version
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2022-12-08 12:32:19 +01:00 |
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mvdbeek
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438012be66
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Bump galaxy-util version to 22.1.2
galaxy-util-22.1.2
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2022-12-08 12:28:19 +01:00 |
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mvdbeek
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c818c1e36a
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Update changelog
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2022-12-08 12:27:36 +01:00 |
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Marius van den Beek
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e7b8e9231f
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Merge pull request #15148 from mvdbeek/pin_packaging
[22.01] Pin packaging to below 22
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2022-12-08 12:18:29 +01:00 |
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mvdbeek
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173177e12e
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Add missing pyparsing dependency to galaxy-util
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2022-12-08 12:01:55 +01:00 |
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Nicola Soranzo
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b3eedc1049
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Update minikube-setup-action and use more recent k8s version
The older minikube/k8s fail to launch under Ubuntu 22.04, which
is being deployed on GitHub action workers:
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2022-12-08 12:01:55 +01:00 |
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mvdbeek
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dc7c8e7ac6
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Pin packaging to below 22
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2022-12-08 12:01:55 +01:00 |
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Dannon Baker
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b5e623fb2b
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Merge remote-tracking branch 'upstream/release_22.01' into release_22.05
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2022-12-07 20:31:12 -05:00 |
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Dannon
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81ddf41685
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Merge pull request #15144 from martenson/tox4-allow
[22.01] Rename removed tox configuration option
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2022-12-07 20:27:29 -05:00 |
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Martin Cech
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d251aa2d53
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[22.01] Rename removed tox configuration option
breaks our tox setup with 4.0.0
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2022-12-07 22:52:11 +01:00 |
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Marius van den Beek
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f2c221f484
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Merge pull request #15122 from natefoo/gravity-0.13.6
[22.05] Update gravity to 0.13.6
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2022-12-06 20:40:00 +01:00 |
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Nate Coraor
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d30fd7bfc5
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Update gravity to 0.13.6
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2022-12-06 11:46:22 -05:00 |
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Dannon Baker
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1482c2be37
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Merge remote-tracking branch 'upstream/release_22.01' into release_22.05
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2022-12-05 14:36:31 -05:00 |
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Dannon Baker
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e5e6bda4f0
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Contain directory traversal for static files to host static root.
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2022-12-05 14:35:56 -05:00 |
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Martin Cech
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02ff6ff7b4
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Merge pull request #14984 from davelopez/22.05_fix_invalid_quota_amount
[22.05] Fix invalid quota amount
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2022-11-30 20:09:31 +01:00 |
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Marius van den Beek
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bc962ad9f0
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Merge pull request #15024 from lldelisle/tabix_download_22.05
Enable Tabix download + New datatype JuicerMediumTabix in 22.05
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2022-11-28 15:50:38 +01:00 |
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Marius van den Beek
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b1aa2d0b0d
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Merge pull request #15040 from davelopez/22.05_fix_display_collection_error
[22.05] Fix display collection error in history items
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2022-11-28 15:38:21 +01:00 |
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John Chilton
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43bafaf94d
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Merge pull request #15066 from bernt-matthias/topic/fix-validator-log
[22.05] Remove leftover log message
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2022-11-28 15:02:53 +01:00 |
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Nicola Soranzo
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9980ebebab
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Merge pull request #15039 from mvdbeek/fix_tmpdir_mounting
[22.05] Mount ``$TMPDIR``, ``$TMP`` and ``$TEMP`` into container
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2022-11-28 13:09:06 +00:00 |
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Matthias Bernt
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f3efa67ce6
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remove log message
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2022-11-28 11:40:16 +01:00 |
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Lucille Delisle
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1000c67cb5
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remove previous version of sniff
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2022-11-23 11:50:28 +01:00 |
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Lucille Delisle
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5840654280
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use .gz as suggested by @mvdbeek
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2022-11-23 11:40:43 +01:00 |
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Lucille Delisle
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e9704f1eb6
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solve isort
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2022-11-23 08:57:44 +01:00 |
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Lucille Delisle
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d8c56145d3
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prevent sniff
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2022-11-23 08:53:37 +01:00 |
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Lucille Delisle
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5f71740e00
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change file_ext
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2022-11-22 22:27:54 +01:00 |
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davelopez
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fd25b4212d
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Make selenium test more robust
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2022-11-22 18:20:34 +01:00 |
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Lucille Delisle
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8ce7bd8f00
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create a new class IntervalTabix
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2022-11-22 16:53:56 +01:00 |
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davelopez
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ada51b2afa
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Add selenium test
For display job details on failed collections
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2022-11-22 15:56:48 +01:00 |
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davelopez
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0b2cc4f6aa
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Show collection job details only when source is Job
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2022-11-22 15:54:42 +01:00 |
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davelopez
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c5e7a36731
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Add selenium test for collection job details button
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2022-11-21 18:59:44 +01:00 |
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mvdbeek
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b3c0428ceb
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xfail kubernetes test_job_environment
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2022-11-21 15:07:41 +01:00 |
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davelopez
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73e838b87f
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Add missing show details button for collections
If the collection has a `job_source_id` the icon to show details will be displayed
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2022-11-21 14:50:54 +01:00 |
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mvdbeek
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b4c26ee5b5
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Mount TMPDIR,TMP and TEMP into container
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2022-11-21 11:45:53 +01:00 |
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mvdbeek
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702bdc0ec9
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Test that tempdir creation is possible
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2022-11-21 11:44:24 +01:00 |
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Marius van den Beek
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77f791697e
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Merge pull request #15038 from mvdbeek/fix_metadata_import_for_discovered_metadata_files
[22.05] Fix metadata setting for discovered datasets with extended metadata
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2022-11-21 11:29:30 +01:00 |
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mvdbeek
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b6117ee3df
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Fix metadata setting for discovered datasets with extended metadata
Fixes https://github.com/galaxyproject/galaxy/issues/15036
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2022-11-20 16:02:15 +01:00 |
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Lucille Delisle
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08bb972264
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fix column indices
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2022-11-19 21:36:49 +01:00 |
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Lucille DelisleandMarius van den Beek
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271179b3ac
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Remove comment
Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com>
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2022-11-18 15:50:02 +01:00 |
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Lucille Delisle
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bba6e8d136
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add sniffer for bcf before tabix
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2022-11-18 14:15:58 +01:00 |
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Lucille Delisle
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0b050ced41
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fix test file tabix (was gzip instead of bgzip)
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2022-11-18 14:15:45 +01:00 |
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Lucille Delisle
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ba0108a91d
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format with black
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2022-11-18 12:39:06 +01:00 |
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Lucille Delisle
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03314ef44d
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add test for sniff
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2022-11-18 12:21:13 +01:00 |
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Lucille Delisle
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3d6afa9a20
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update datatypes_conf.xml
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2022-11-18 12:21:13 +01:00 |
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Lucille Delisle
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482d4c91ce
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add JuicerMediumTabix class
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2022-11-18 12:21:13 +01:00 |
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Lucille Delisle
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d19f43172e
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change validate to sniff
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2022-11-18 12:21:13 +01:00 |
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Lucille Delisle
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7594850aa7
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define Tabix in tabular
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2022-11-18 12:21:12 +01:00 |
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Lucille Delisle
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05b7a94b83
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enable tabix at download
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2022-11-18 12:21:12 +01:00 |
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