Nate Coraor
db6944523f
Support setting container resolvers directly in the app config
2021-08-13 15:23:30 -04:00
Nate Coraor
7c9c7f8305
Rename containers_resolvers_config_file to container_resolvers_config_file
2021-08-13 14:24:16 -04:00
John Chilton
48df4b910d
Systematic handling of remotely required tool files.
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- Allow tools to define "pulsar file action"-like paths for files to include and exclude during remote job setup.
- Package up a list of defaults for older tools.
2021-08-10 14:04:32 -04:00
Martin Cech
2c0a60d801
add <creator> to the schema template, use live links in xsd
2021-07-09 18:28:15 +02:00
Dannon
38f89e18b5
Merge pull request #12234 from eancelet/debug-doc-update
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Add a note to get Python extension and set interpreter
2021-07-06 14:28:29 -04:00
Sergey Golitsynskiy
59ee7b55e7
Update doc/source/dev/debugging_tests.md
2021-07-06 14:21:21 -04:00
Estelle Ancelet
beaabd1817
Add a note to get Python extension and set interpreter
2021-07-06 14:07:05 +02:00
Dannon Baker
a57202da59
Consistency in referring to assumed galaxy root
2021-07-01 12:09:30 -04:00
Dannon Baker
44b7d165c6
Add a note about needing galaxy.yml (and not sample) here.
2021-07-01 12:05:55 -04:00
Dannon Baker
9058c02026
Update debug target name in example .vscode launchconfig
2021-07-01 11:58:22 -04:00
mvdbeek
11363a013e
Merge branch 'release_21.05' into dev
2021-06-24 12:22:55 +02:00
John Chilton
cd2e51fd5f
Merge pull request #12164 from lldelisle/ftp_doc
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change doc for ftp_upload_dir/site
2021-06-23 19:08:29 -04:00
John Chilton
16d22d02f4
Merge pull request #11989 from almahmoud/k8s_runner_its
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[21.05] More IT and k8s runner fixes
2021-06-23 10:59:40 -04:00
almahmoud
b6092e8c4c
Use new config option for base path
2021-06-22 01:57:42 -04:00
Lucille Delisle
a93d3308bc
change doc for ftp_upload_dir/site
2021-06-18 11:08:48 +02:00
Dannon
1aeba32257
Merge pull request #12103 from guerler/restrict_user_account_management
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Add configuration option to hide user account management interfaces
2021-06-15 08:26:59 -07:00
mvdbeek
24d825856a
Merge branch 'release_21.05' into 'release_21.09'
2021-06-10 21:23:23 +02:00
Marius van den Beek
f115fee4a7
Merge pull request #11938 from mvdbeek/21.05_release_notes
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Release notes for 21.05
2021-06-10 20:34:50 +02:00
mvdbeek
5468704663
Capitalize Circus
2021-06-10 20:18:39 +02:00
mvdbeek
a8b3efb26f
Minor text tweaks
2021-06-10 20:10:34 +02:00
mvdbeek
44b65b285f
Add missing whitespace
2021-06-10 20:00:20 +02:00
mvdbeek
2a7043f218
Tweak notes
2021-06-10 19:41:05 +02:00
mvdbeek
6f67579d92
Add configuration changes
2021-06-10 19:41:05 +02:00
mvdbeek
e6e7f1506d
Add more PRs
2021-06-10 18:11:32 +02:00
mvdbeek
1b1d419a79
Add deprecations, small tweaks to PR titles
2021-06-10 17:59:51 +02:00
mvdbeek
98da5a9547
Add 21.05_announce
2021-06-10 16:43:26 +02:00
mvdbeek
806c7fb11e
Add release testing team
2021-06-10 16:32:46 +02:00
mvdbeek
f191197a7b
Add new PRs to notes
2021-06-10 16:09:33 +02:00
John Chilton
b477a0891b
Merge pull request #12105 from natefoo/dependency-resolution-config-docs
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Update dependency resolver docs and drop sample XML file in favor of direct configuration under the dependency_resolvers key of galaxy.yml
2021-06-09 11:03:26 -04:00
Martin Cech
75bb4de6b3
Merge pull request #12114 from martenson/label-change
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docs: change GIEs label to interactive-tools
2021-06-09 16:09:02 +02:00
Martin Cech and Nicola Soranzo
b2be4564bf
proper ordering
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2021-06-09 14:50:53 +02:00
Martin Cech
d9d531697e
docs: change GIEs label to interactive-tools
2021-06-09 14:36:58 +02:00
Nate Coraor
15e1b06ba5
A few more updates to the tool deps documentation
2021-06-07 20:54:23 -04:00
Nate Coraor
2ddc310711
Update dependency resolver docs and drop sample XML file in favor of
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direct configuration under the dependency_resolvers key of galaxy.yml.
2021-06-07 18:16:07 -04:00
guerler
d901dd48d3
Rename option to enable_account_interface
2021-06-07 15:20:06 -04:00
guerler
8d9d8363a7
Add configuration option to hide user account management interfaces for admin managed instances
2021-06-07 13:33:02 -04:00
Helena Rasche
b56d84177d
ok, some more niceness
2021-06-07 14:29:35 +02:00
Helena Rasche
d81cf9008e
ok, 21.05 out
2021-06-07 14:24:09 +02:00
Marius van den Beek
b84dccb7f9
Merge pull request #11973 from almahmoud/k8s_runner_its
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[21.05] Change default prefix
2021-05-13 18:07:00 +02:00
almahmoud
ab8bfe4b10
Change default prefix
2021-05-13 12:04:51 -04:00
Marius van den Beek
c5e00e49dd
Merge pull request #11914 from Nerdinacan/history-audit
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[21.05] Create history_audit table to avoid write deadlocks during history.update_time updates
2021-05-13 16:26:59 +02:00
almahmoud
d0971cc1b5
Move configs to schema
2021-05-11 16:43:46 -04:00
mvdbeek
3d59717142
Add celery setup that regularly cleans audit_table
2021-05-11 18:34:30 +02:00
mvdbeek
a48233493a
Release notes for 21.05
2021-05-05 22:12:25 +02:00
mvdbeek
2f22a31a15
Update documentation for new defaults and recommendations
2021-04-13 10:13:42 +02:00
Helena
e5000e24c8
Merge pull request #11351 from selten/analytics
2021-04-08 16:45:34 +00:00
Nicola Soranzo
0e43c82a49
Fix tool profile details in schema docs
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Per the GitHub Flavored Markdown Spec: "Block-level elements cannot be
inserted in a table.", see
https://github.github.com/gfm/#tables-extension-
2021-04-07 17:34:47 +01:00
John Chilton
0b0b8c48b9
Merge pull request #11557 from VJalili/two_container
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Add documentation on how to setup Pulsar's two-container job runner
2021-04-07 10:33:32 -04:00
Nicola Soranzo
e1014acc9d
Merge branch 'release_21.01' into dev
2021-04-07 13:13:29 +01:00
Nicola Soranzo
13d91da1f4
Fix typo in upstream_mod_zip admin docs
2021-04-06 20:04:19 +01:00
Nate Coraor