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mvdbeek
2021-06-10 16:09:33 +02:00
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doc/source/releases/21.05.rst
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@@ -188,6 +188,14 @@ Enhancements
`Pull Request 11753`_
.. enhancement
* Include more info on test input staging exception
`Pull Request 11953`_
* Add indexes on update_time columns used in ORDER BY clauses
`Pull Request 11988`_
* Don't assert output_metadata state
`Pull Request 12100`_
* Fix and enhance subworkflow step upgrade messages
`Pull Request 12120`_
* Performance testing infrastructure.
`Pull Request 10117`_
* Stub MQ docs
@@ -539,6 +547,8 @@ Fixes
`Pull Request 11913`_
.. bug_tag_tools
* Open input file in read mode in liftover wrapper
`Pull Request 12001`_
* Resolve session problems, enabled pages and tags fastAPI routes
`Pull Request 11342`_
* Make filter work with file containing header
@@ -546,6 +556,8 @@ Fixes
`Pull Request 11365`_
.. bug_tag_workflows
* Allow trs_version to refer to name or id field
`Pull Request 12021`_
* Workflow editor null/zero fixes
`Pull Request 11265`_
* Fix reconnecting terminals
@@ -567,6 +579,9 @@ Fixes
`Pull Request 11778`_
.. bug_tag_ui
* fix undefined error in ui-file-source
(thanks to `@OlegZharkov <https://github.com/OlegZharkov>`__).
`Pull Request 11586`_
* Remove filter from list:paired element names when filter is not _1
`Pull Request 11486`_
* Beta history current history mismatch with legacy code.
@@ -575,6 +590,19 @@ Fixes
`Pull Request 11879`_
.. bug_tag_jobs
* ITs on K8S tweaks and SSL
(thanks to `@almahmoud <https://github.com/almahmoud>`__).
`Pull Request 11947`_
* Fix anonymous user job walltime query
`Pull Request 11951`_
* Fix container port parsing if IPv6 hostname is ``::``
`Pull Request 11955`_
* Fix isolated job home dir on pulsar
`Pull Request 12037`_
* Don't start workflow scheduler for handler in job pool
`Pull Request 12075`_
* Fix set metadata for primary discovered outputs
`Pull Request 12088`_
* Fix mule job messaging
`Pull Request 11148`_
* Deal with empty claim names in k8s runner
@@ -612,6 +640,65 @@ Fixes
`Pull Request 11633`_
.. bug
* Create history_audit table to avoid write deadlocks during history.update_time updates
`Pull Request 11914`_
* Fix `GET /api/datasets/` docs
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
`Pull Request 11933`_
* Don't move the `update_time` goalpost
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
`Pull Request 11934`_
* Force galaxy_id to string in galactic_job_json
(thanks to `@simonbray <https://github.com/simonbray>`__).
`Pull Request 11965`_
* Update default base images, make DEFAULT_CHANNELS configurable via env var
`Pull Request 11966`_
* Fix mulled singularity building
`Pull Request 11979`_
* restrict invalid input in library pagination
(thanks to `@OlegZharkov <https://github.com/OlegZharkov>`__).
`Pull Request 11996`_
* Fix breadcrumb in dataset details in libraries
(thanks to `@OlegZharkov <https://github.com/OlegZharkov>`__).
`Pull Request 11998`_
* Fix deleted libs for user
(thanks to `@OlegZharkov <https://github.com/OlegZharkov>`__).
`Pull Request 12011`_
* fix library dataset permissions
(thanks to `@OlegZharkov <https://github.com/OlegZharkov>`__).
`Pull Request 12015`_
* Disable import button during "Import to History"
(thanks to `@OlegZharkov <https://github.com/OlegZharkov>`__).
`Pull Request 12016`_
* Hide edit libraries for users
(thanks to `@OlegZharkov <https://github.com/OlegZharkov>`__).
`Pull Request 12023`_
* Fix downloading (sub)folders from data-libraries
(thanks to `@OlegZharkov <https://github.com/OlegZharkov>`__).
`Pull Request 12028`_
* Fix subworkflow / update all steps upgrade action
`Pull Request 12029`_
* Fix uploading multiple files in ftp upload / choose remote files
`Pull Request 12030`_
* add GALAXY_MEMORY_MB* to passt hrough
(thanks to `@bgruening <https://github.com/bgruening>`__).
`Pull Request 12039`_
* invocation_time report fix
`Pull Request 12070`_
* Fix edit field reactivity in libraries
(thanks to `@OlegZharkov <https://github.com/OlegZharkov>`__).
`Pull Request 12080`_
* Fix select all in import from history backbone modal
(thanks to `@OlegZharkov <https://github.com/OlegZharkov>`__).
`Pull Request 12082`_
* Fix export select_all in collections
(thanks to `@OlegZharkov <https://github.com/OlegZharkov>`__).
`Pull Request 12086`_
* fix library search filter
(thanks to `@OlegZharkov <https://github.com/OlegZharkov>`__).
`Pull Request 12087`_
* Fix name of datasets with invalid contents
`Pull Request 12107`_
* Beta History: implement missing advanced search filters
`Pull Request 10972`_
* Fix mypy error with Union in response_model
doc/source/releases/21.05_prs.rst
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@@ -1,5 +1,51 @@
.. github_links
.. _Pull Request 11586: https://github.com/galaxyproject/galaxy/pull/11586
.. _Pull Request 11742: https://github.com/galaxyproject/galaxy/pull/11742
.. _Pull Request 11914: https://github.com/galaxyproject/galaxy/pull/11914
.. _Pull Request 11933: https://github.com/galaxyproject/galaxy/pull/11933
.. _Pull Request 11934: https://github.com/galaxyproject/galaxy/pull/11934
.. _Pull Request 11936: https://github.com/galaxyproject/galaxy/pull/11936
.. _Pull Request 11946: https://github.com/galaxyproject/galaxy/pull/11946
.. _Pull Request 11947: https://github.com/galaxyproject/galaxy/pull/11947
.. _Pull Request 11950: https://github.com/galaxyproject/galaxy/pull/11950
.. _Pull Request 11951: https://github.com/galaxyproject/galaxy/pull/11951
.. _Pull Request 11953: https://github.com/galaxyproject/galaxy/pull/11953
.. _Pull Request 11955: https://github.com/galaxyproject/galaxy/pull/11955
.. _Pull Request 11963: https://github.com/galaxyproject/galaxy/pull/11963
.. _Pull Request 11965: https://github.com/galaxyproject/galaxy/pull/11965
.. _Pull Request 11966: https://github.com/galaxyproject/galaxy/pull/11966
.. _Pull Request 11973: https://github.com/galaxyproject/galaxy/pull/11973
.. _Pull Request 11979: https://github.com/galaxyproject/galaxy/pull/11979
.. _Pull Request 11988: https://github.com/galaxyproject/galaxy/pull/11988
.. _Pull Request 11991: https://github.com/galaxyproject/galaxy/pull/11991
.. _Pull Request 11996: https://github.com/galaxyproject/galaxy/pull/11996
.. _Pull Request 11998: https://github.com/galaxyproject/galaxy/pull/11998
.. _Pull Request 12001: https://github.com/galaxyproject/galaxy/pull/12001
.. _Pull Request 12011: https://github.com/galaxyproject/galaxy/pull/12011
.. _Pull Request 12015: https://github.com/galaxyproject/galaxy/pull/12015
.. _Pull Request 12016: https://github.com/galaxyproject/galaxy/pull/12016
.. _Pull Request 12020: https://github.com/galaxyproject/galaxy/pull/12020
.. _Pull Request 12021: https://github.com/galaxyproject/galaxy/pull/12021
.. _Pull Request 12023: https://github.com/galaxyproject/galaxy/pull/12023
.. _Pull Request 12028: https://github.com/galaxyproject/galaxy/pull/12028
.. _Pull Request 12029: https://github.com/galaxyproject/galaxy/pull/12029
.. _Pull Request 12030: https://github.com/galaxyproject/galaxy/pull/12030
.. _Pull Request 12037: https://github.com/galaxyproject/galaxy/pull/12037
.. _Pull Request 12039: https://github.com/galaxyproject/galaxy/pull/12039
.. _Pull Request 12070: https://github.com/galaxyproject/galaxy/pull/12070
.. _Pull Request 12075: https://github.com/galaxyproject/galaxy/pull/12075
.. _Pull Request 12079: https://github.com/galaxyproject/galaxy/pull/12079
.. _Pull Request 12080: https://github.com/galaxyproject/galaxy/pull/12080
.. _Pull Request 12082: https://github.com/galaxyproject/galaxy/pull/12082
.. _Pull Request 12086: https://github.com/galaxyproject/galaxy/pull/12086
.. _Pull Request 12087: https://github.com/galaxyproject/galaxy/pull/12087
.. _Pull Request 12088: https://github.com/galaxyproject/galaxy/pull/12088
.. _Pull Request 12096: https://github.com/galaxyproject/galaxy/pull/12096
.. _Pull Request 12100: https://github.com/galaxyproject/galaxy/pull/12100
.. _Pull Request 12107: https://github.com/galaxyproject/galaxy/pull/12107
.. _Pull Request 12112: https://github.com/galaxyproject/galaxy/pull/12112
.. _Pull Request 12120: https://github.com/galaxyproject/galaxy/pull/12120
.. _Pull Request 9807: https://github.com/galaxyproject/galaxy/pull/9807
.. _Pull Request 10117: https://github.com/galaxyproject/galaxy/pull/10117
.. _Pull Request 10222: https://github.com/galaxyproject/galaxy/pull/10222