Nate Coraor
4227d0eabb
Remove additional pieces from old genome index system.
2014-07-27 02:48:40 -04:00
Nate Coraor
794484e8c3
Rename ucsc_build_sites.txt to .sample.
2014-02-27 16:37:48 -05:00
Nate Coraor
9c64fc123e
Remove broken and/or obsolete tools.
2014-01-27 13:58:31 -05:00
Ross Lazarus
93c3148b4c
backout -r 10811
2013-10-08 10:56:03 +11:00
Ross Lazarus
59bd638b82
updated ucsc builds
2013-10-07 10:41:50 +11:00
Dannon Baker
9544149163
Include hg19 in ucsc_build_sites.txt
2013-09-19 09:59:49 -04:00
Dave Bouvier
36dbacf8f1
Cleaned up code, added searchable list of NCBI builds.
2012-07-05 09:56:54 -04:00
Dave Bouvier
33a50cd7ee
Also added missing publicbuilds.txt
2012-06-26 15:18:19 -04:00
Guruprasad Anada
1e51b17b80
Added apiMel3 to manual builds.
2012-02-23 13:38:01 -05:00
Guruprasad Anada
d487d10518
added cacao genome to manual builds
2012-01-30 12:29:39 -05:00
Ross Lazarus
d53c3e984f
Backed out changeset 48bbe32beefe which introduced a whole bunch of unintended reversions from a broken hg repository
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This is a backout of commit 5765
2011-07-06 09:44:56 +10:00
Ross Lazarus
86b55bb0c0
branch merge
2011-07-05 12:40:43 +10:00
Kelly Vincent
53471e1615
Added new builds to manual builds list
2011-06-24 16:13:48 -04:00
Kelly Vincent
08dc13008e
Added builds and length info to manual builds list
2011-06-10 16:31:52 -04:00
Kelly Vincent
acb1fbc6f0
Added hg_g1k_v37 to manual builds
2011-05-19 15:38:12 -04:00
Nate Coraor
a7f17d327d
Add a method to add manual builds to buildbot runs.
2011-05-12 11:53:32 -04:00
Kelly Vincent
d969f29c01
Corrected typo in manual build name
2011-04-06 10:16:30 -04:00
Kelly Vincent
d3d26a7149
Modified add_manual_builds script so that it will include the build in parentheses after the name even if there are no chromosome lengths listed (previously would not because of line break after name); also added a couple of new manual builds
2011-03-29 13:59:07 -04:00
Kelly Vincent
833478bbbd
Added two more builds to the manual builds list
2011-03-10 16:08:39 -05:00
Kelly Vincent
b5ee9ee8c7
Modified script that adds manual builds to add build even if chrom length details not present; added a few new manual builds
2011-03-10 13:28:33 -05:00
Kelly Vincent
7004393599
Adding several genomes to the manual builds list
2011-02-09 12:36:40 -05:00
Kelly Vincent
1bd873020b
Added Sscrofa9.58 to manual_builds.txt and removed phiX from builds.txt.sample (it's in manual_builds.txt)
2010-07-15 12:04:49 -04:00
Nate Coraor
7ffcc6184b
Make the PSU BX browser a UCSC browser instead of being a different display type.
2010-06-29 12:40:42 -04:00
Nate Coraor
2bd25bf652
Remove builds.txt from source control - use builds.txt.sample instead and copy it over if you don't have one
2010-05-10 12:50:09 -04:00
Kelly Vincent
dbfa0a7cca
Updated builds.txt (and manual_builds.txt) to newest version, corresponding to that on main. Includes hg19 and phiX correction.
2010-05-06 12:11:47 -04:00
Guruprasad Anada
4d0183412f
Converted space to tab on mm5 declaration line in manual_builds.txt.
2010-03-04 13:02:56 -05:00
Kelly Vincent
7403f4301b
Updated Bowtie wrapper for new fastqcssanger datatype, and added equCab2 to builds.txt so sam_to_bam and sam_pileup will pass
2010-03-03 15:37:43 -05:00
Guruprasad Anada
20bb7f6d5b
Added mm5 to the list of manual builds
2010-02-18 11:26:39 -05:00
Greg Von Kuster
f0fd5a25e7
Add Arabidopsis integration at TAIR and UCLA patch provided by Brad Chapman ( handles # 135 ).
2009-10-07 11:12:39 -04:00
Guruprasad Anada
8b193b63fd
Updated manual builds will L. major (2005) genome.
2009-09-10 10:42:50 -04:00
Guruprasad Anada
c689c32831
Updated manual builds list with human herpesvirus genome.
2009-09-09 11:01:22 -04:00
Daniel Blankenberg
201146e4a2
Adding phiX to manual_builds.txt.
2009-03-16 11:39:59 -04:00
Daniel Blankenberg
86f0862aa4
Move ucsc and gbrowse data from static to tool-data/shared.
...
Cron scripts on test and main will need to be updated when the server is.
GOPS complement tool and annotation profiler will now correctly use chromosome lengths files if available.
2008-06-03 18:53:26 +00:00
Nate Coraor