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Adding several genomes to the manual builds list

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This commit is contained in:
Kelly Vincent
2011-02-09 12:36:40 -05:00
parent b5f72b0afe
commit 7004393599
1 changed files with 25 additions and 3 deletions
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tool-data/shared/ucsc/manual_builds.txt
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@@ -665,8 +665,30 @@ baciAnth_AMES Bacillus anthracis str. Ames chr=5227293
shewOnei Shewanella oneidensis MR-1 plasmid_pMR-1=161613,chr=4969803
15217 Human herpesvirus 1 NC_001806=152261
lMaj5 Leishmania major 2005 chr1=268984,chr2=355714,chr3=384518,chr4=441313,chr5=465823,chr6=516874,chr7=596348,chr8=574972,chr9=573441,chr10=570864,chr11=582575,chr12=675347,chr13=654604,chr14=622648,chr15=629514,chr16=714659,chr17=684831,chr18=739751,chr19=702212,chr20=742551,chr21=772974,chr22=716608,chr23=772567,chr24=840950,chr25=912849,chr26=1091579,chr27=1130447,chr28=1160128,chr29=1212674,chr30=1403454,chr31=1484336,chr32=1604650,chr33=1583673,chr34=1866754,chr35=2090491,chr36=2682183
arabidopsis Arabidopsis thaliana TAIR9
arabidopsis Arabidopsis thaliana TAIR9 chr1=30427671,chr2=19698289,chr3=23459830,chr4=18585056,chr5=26975502
arabidopsis_tair8 Arabidopsis thaliana TAIR8
araTha1 Arabidopsis thaliana TAIR7
mm5 Mouse May 2004 (mm5)
Sscrofa9.58 Pig May 2010 (SGSC Sscrofa9.58)
mm5 Mouse May 2004
Sscrofa9.58 Pig May 2010 chr1=79819395,chr2=66741929,chr3=145240301,chr4=57436344,chr5=134546103,chr6=136414062,chr7=64400339,chr8=77440658,chr9=54314914,chr10=295534705,chr11=16613,chr12=123604780,chr13=140138492,chr14=100521970,chr15=136259946,chr16=125876292,chr17=123310171,chr18=132473591,chrM=119990671,chrX=148515138
AaegL1 Mosquito (Aedes aegypti)
AgamP3 Mosquito (Anopheles gambiae) chr3L=41963435,chr2L=49364325,chrX=24393108,chr2R=61545105,chrY_unplaced=237045,chr3R=53200684,chrUn=42389979,chrM=15363
CpipJ1 Mosquito (Culex quinquefasciatus)
IscaW1 Deer Tick (Ixodes scapularis)
PhumU1 Head Louse (Pediculus humanus)
bosTauMd3 Cow Aug. 2009 (UMD3.1)
droWil1 D. willistoni Feb. 2006
droAna3 D. ananassae Feb. 2006
droEre2 D. erecta Feb. 2006
droGri2 D. grimshawi Feb. 2006
droMoj3 D. mojavensis Feb. 2006
droSec1 D. sechellia Oct. 2005
droSim1 D. simulans Apr. 2005 chrU=15797150,chr4=949497,chrYh_random=100575,chr3R=27517382,chr3R_random=1307089,chr3L=22553184,chr2L=22036055,chr2h_random=3178526,chrX_random=5698898,chrXh_random=84659,chrX=17042790,chr4_random=134295,chr2R=19596830,chr2R_random=2996586,chr3L_random=1049610,chr2L_random=909653,chrM=14972,chr3h_random=1452968
droVir3 D. virilis Feb. 2006
Bombyx_mori_p50T_2.0 Silkworm
oryza_sativa_japonica_nipponbare_IRGSP4.0 Rice (Oryza sativa ssp. japonica var. Nipponbare) chr1=30357780,chr10=32124789,chr11=30039014,chr12=35863200,chr2=37257345,chr3=36823111,chr4=45064769,chr5=134525,chr6=23843360,chr7=28530027,chr8=27757321,chr9=30828668,chrM=23661561,plastid=490520
Schizosaccharomyces_pombe_1.1 Fission Yeast (S. pombe) chrII=4539804,chrIII=2452883,chrI=5579133,chrM=19431
Xanthomonas_oryzae_PXO99A Xanthomonas oryzae pv. oryzae PXO99A chr=5240075
eschColi_EC4115 Escherichia coli EC4115 chr=5572075,plasmid_pO157=94644,plasmid_pEC4115=37452
eschColi_TW14359 Escherichia coli TW14359 chr=5528136,plasmid_pO157=94601
pUC18 pUC18 Plasmid
nomLeu1 Gibbon chr1=245538060,chr10=135320619,chr10_random=51011,chr11=134551115,chr12=132397767,chr12_random=336702,chr13=114140689,chr14=106383727,chr15=100373758,chr15_random=814500,chr16=88836341,chr16_random=121782,chr17=78641643,chr17_random=2617017,chr18=76124575,chr19=63791437,chr19_random=297341,chr1_random=3502083,chr2=242756806,chr20=62432189,chr21=47019833,chr22=49520868,chr22_random=31530,chr2_random=335351,chr3=199337376,chr3_random=950829,chr4=191633586,chr4_random=923474,chr5=180612635,chr5_random=150620,chr6=170839170,chr6_random=1837487,chr7=158619002,chr7_random=805938,chr8=146283503,chr8_random=649034,chr9=138402467,chr9_random=1315712,chrUn=217400297,chrX=154793867,chrX_random=1690203,chrY=57470892