 Dave Bouvier
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b6886e4f67
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scripts/common_startup.sh executes fetch_eggs.py correctly.
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2014-09-24 16:54:53 -04:00 |
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Nate Coraor
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c9d0309164
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Use common_startup.sh for buildbot instead of maintaining a duplicate copy of the samples list.
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2014-09-23 10:40:39 -04:00 |
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Nate Coraor
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2469b7513b
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Fix unit tests I broke.
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2014-09-16 10:13:08 -04:00 |
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Nate Coraor
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8fadc6392b
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Rename universe_wsgi.ini -> galaxy.ini everywhere.
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2014-09-15 16:43:51 -04:00 |
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Nate Coraor
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4227d0eabb
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Remove additional pieces from old genome index system.
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2014-07-27 02:48:40 -04:00 |
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Dave Bouvier
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bc980662ad
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Add ucsc_build_sites.txt.sample to setup_buildbot.sh
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2014-06-02 10:27:58 -04:00 |
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Nate Coraor
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9c64fc123e
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Remove broken and/or obsolete tools.
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2014-01-27 13:58:31 -05:00 |
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Nate Coraor
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86f25f3bcf
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GCC2013 Advanced Tool and Data Source Configuration workshop: "The test framework uses tool_conf.xml.sample for reasons unknown and lost to time."
Use tool_conf.xml for running functional tests, rather than tool_conf.xml.sample.
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2013-06-30 10:04:58 -04:00 |
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Dave Bouvier
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088673b5b5
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Added some checks, making buildbot setup more useful for standalone buildbots.
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2013-04-17 15:34:32 -04:00 |
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Dave Bouvier
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7da15bb830
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Added tool_sheds_conf.xml.sample to buildbot_setup.sh.
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2013-02-27 15:45:43 -05:00 |
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Daniel Blankenberg
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1c9861eca2
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First pass at a plugable Data Manager. Data Managers can be defined locally or installed from a Tool Shed. TODO: Display Data Manager information in the Tool Shed. Do not install Data Managers into Tool Panel. Add tests. Write Docs.
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2013-02-14 15:13:06 -05:00 |
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Dave Bouvier
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d43ebc0314
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Make buildbot_setup.sh actually copy the job_conf sample file.
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2013-02-11 13:56:11 -05:00 |
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Dave Bouvier
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b2730ae250
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Add job config sample file to buildbot setup and job_conf.xml to .hgignore.
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2013-02-11 13:52:02 -05:00 |
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Daniel Blankenberg
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a8c22d6a5b
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Add shed_tool_data_table_conf.xml.sample to buildbot_setup.sh.
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2012-11-07 21:16:17 -05:00 |
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Carl Eberhard
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327cbff6c9
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fix for missing tool-data/shared/ucsc/publicbuilds.txt (related to test failure on functional.test_get_data.UploadData.test_0020_upload_file)
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2012-08-08 14:39:40 -04:00 |
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Greg Von Kuster
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305ab08cb0
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Potential fix for the buildbot.
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2012-02-29 16:27:46 -05:00 |
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Daniel Blankenberg
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d69fe3360f
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Add GATK tool-data to buildbot_setup.sh links.
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2011-05-12 12:20:52 -04:00 |
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Nate Coraor
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a7f17d327d
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Add a method to add manual builds to buildbot runs.
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2011-05-12 11:53:32 -04:00 |
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Ross Lazarus
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7170727321
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added all_fasta.loc to buildbot - needed for picard tests
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2011-05-10 10:35:19 -04:00 |
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Kelly Vincent
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2413737ef1
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Adding picard loc file to buildbot setup
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2011-05-09 11:11:23 -04:00 |
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Nate Coraor
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8ba82ff34e
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Generalize setup of chrom length files for buildbot.
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2011-03-02 16:21:36 -05:00 |
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Nate Coraor
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136bae9300
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Fix symlink to microbial_data.loc in buildbot setup.
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2011-03-02 16:20:16 -05:00 |
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Nate Coraor
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e8a11ffd6c
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Add ccat_configurations.loc to buildbot_setup.sh
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2011-02-28 08:33:48 -05:00 |
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Nate Coraor
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e5fbc191c2
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Add mosaik index location file to buildbot setup.
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2011-02-26 13:12:44 -05:00 |
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Kanwei Li
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036082793b
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Fix bed_to_bigBed test
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2011-02-24 15:23:21 -05:00 |
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Nate Coraor
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4800b100ab
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Add test data repository setup directly to the buildbot setup script.
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2011-02-16 13:37:13 -05:00 |
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Kelly Vincent
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edc75c49cb
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Added bwa_index_color.loc to buildbot setup config
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2011-02-09 13:11:28 -05:00 |
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Nate Coraor
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f3b28ec3b0
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New hyphy nj tree test output for ps2pdf version standardized across all systems, and fix for the wig_to_bigwig test.
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2010-09-29 23:55:43 -04:00 |
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Nate Coraor
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ef90e5c5b0
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Add setup of tool-data/shared/jars to the buildbot setup script.
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2010-09-02 11:37:26 -04:00 |
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Kelly Vincent
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f6a3996d9b
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Adding SRMA wrapper and all associated test files and index loc sample
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2010-08-19 18:17:31 -04:00 |
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Daniel Blankenberg
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58bb746fbe
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Add BFAST index loc file to buildbot_setup.sh.
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2010-08-19 16:11:21 -04:00 |
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Nate Coraor
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c6cf973f3a
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Added new tool_data_table_conf.xml config file to buildbot setup script.
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2010-08-17 09:44:08 -04:00 |
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Nate Coraor
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133caa6170
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Add missing location files for buildbot
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2010-05-27 12:22:27 -04:00 |
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Nate Coraor
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89849e12ce
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Fix buildbot's builds.txt
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2010-05-12 11:43:57 -04:00 |
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Kelly Vincent
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fc8a137b5e
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First pass as PerM. Also made cosmetic changes to BWA.
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2010-03-17 16:40:36 -04:00 |
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Nate Coraor
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0bfa58679b
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Fix locations of cached data for tests
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2010-02-25 12:27:07 -05:00 |
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Nate Coraor
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ea7f5879e1
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update buildbot_setup.sh for new data location
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2010-02-23 16:12:20 -05:00 |
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Nate Coraor
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b8cc85ae69
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Add path to OS X HYPHY for buildbot
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2010-02-05 15:27:38 -05:00 |
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Kelly Vincent
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b5dab3a63f
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Removed SOLiD option from BWA, cleaned up Bowtie and BWA wrapper interfaces, and changed name of BWA index loc file
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2010-01-22 10:49:38 -05:00 |
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Kelly Vincent
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e1c7abc5ac
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Added bowtie_indices_color.loc to buildbot_setup.sh
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2010-01-13 16:12:57 -05:00 |
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Greg Von Kuster
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011e5503ff
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Add the links for the annotation_profiler tool-data files to buildbot_setup.sh so buildbot will test the tool.
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2010-01-05 13:01:37 -05:00 |
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Greg Von Kuster
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5ce0c4599f
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Make buildbots's tool-data dir include a soft link to /galaxy/home/universe/encode_feature_partitions
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2009-12-18 10:27:00 -05:00 |
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Nate Coraor
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27dee6fadc
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Fix path to HYPHY in buildbot_setup.sh
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2009-12-07 13:31:27 -05:00 |
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Greg Von Kuster
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81bd968bd1
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Fixes for lastz_wrapper that includes job splitting, more functional tests, removed incorrectly committed .loc file and committed the .loc.sample file.
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2009-12-01 20:16:41 -05:00 |
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Nate Coraor
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29ee36bd7d
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Copy the sample universe_wsgi.ini for buildbot so the new eggs code doesn't bomb
|
2009-11-05 09:29:03 -05:00 |
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Kelly Vincent
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52428ff2f3
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Added several loc files to setup.sh and buildbot_setup.sh
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2009-11-04 13:58:50 -05:00 |
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Nate Coraor
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af80e18d3b
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Buildbot setup also needs the directory creation glue.
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2008-07-14 13:42:57 -04:00 |
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Nate Coraor
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80c829fd32
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Fixed maf loc files in buildbot setup script.
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2008-06-11 13:11:15 +00:00 |
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Nate Coraor
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44c68cfe2f
|
Since it's more complex now, a script for buildbot to run to set up
stuff that needs to exist for tests to run.
|
2008-06-09 21:20:20 +00:00 |
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