Martin Cech
1ba763aea7
add Matthias Bernt to committers group
2019-08-12 08:32:14 -04:00
John Chilton
19134aeece
Merge remote-tracking branch 'galaxyproject/dev' into installable-config
2019-08-09 13:52:29 -04:00
Helena Rasche
af5ecc487d
rewrite
2019-08-09 16:14:32 +02:00
Helena Rasche
82c417d6e4
document workflow_schedulers_config_file
2019-08-09 15:19:43 +02:00
John Chilton
6b3fec0a92
Merge pull request #8404 from martenson/nginx-docs
...
mention IGB in the docs
2019-08-05 10:26:58 -04:00
Martin Cech
8c01ae716d
change mysql support to deprecated
...
until we fix migrations at least
2019-08-02 11:12:44 -04:00
Martin Cech
cb3c5b7a5e
mention IGB in the docs
2019-08-02 09:36:37 -04:00
Daniel Blankenberg
8aebb64ae4
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into realtimetools
2019-07-25 14:59:53 -04:00
Sergey Golitsynskiy
df5252c887
Update RST files to reflect code structure changes
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Also, clean out obsolete RST files.
2019-07-21 12:42:58 -04:00
Nicola Soranzo
e565ef043c
Merge branch 'release_19.05' into dev
2019-07-20 01:33:10 +01:00
Nate Coraor
a914200965
Correct uWSGI socket path in nginx/Apache docs
2019-07-15 15:43:26 -04:00
Daniel Blankenberg
56aab88923
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into realtimetools
2019-07-11 17:04:17 -04:00
Marius van den Beek
ef9698895a
Merge pull request #8319 from nsoranzo/lowercase_boolean_yaml
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Use lowercase true/false in config_schema.yml
2019-07-10 11:18:19 +02:00
Marius van den Beek
bc7b48756b
Merge pull request #7402 from guerler/activate_toolshed
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Activate api-based Toolshed interface in Admin panel
2019-07-10 11:06:18 +02:00
Nicola Soranzo
d0c28f669b
Use lowercase true/false in config_schema.yml
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since these are the only allowed values for booleans in YAML 1.2:
https://yaml.org/spec/1.2/spec.html#id2803629
make config-rebuild
2019-07-09 18:58:51 +01:00
Dannon Baker
3072975897
Drop mimeparse docs
2019-07-09 14:14:37 +01:00
Marius van den Beek
d22d7beaf4
Merge pull request #8305 from jmchilton/axe_log_tempfile
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Remove log_tempfile.
2019-07-09 14:42:43 +02:00
guerler
deaa583890
Merge branch 'dev' into activate_toolshed
2019-07-09 13:58:01 +02:00
Dannon Baker
f5f15e2dfc
Drop log_tempfile docs
2019-07-08 20:04:03 -04:00
Dannon Baker
ae11aaa5ec
Drop psyco_full docs
2019-07-08 16:08:20 -04:00
Nate Coraor
b099ea34cf
Update galaxy config to include config_dir and data_dir options
2019-07-08 18:14:53 +02:00
Daniel Blankenberg
e4dd821d7f
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into realtimetools
2019-07-07 17:54:48 +02:00
Sergey Golitsynskiy
b5f19e8466
Rerun make updaterst
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First rm doc/source/lib/*, then rerun sphinx. Cleans out obsolete files.
2019-07-06 10:10:56 +02:00
Sergey Golitsynskiy
17beaef624
Update Sphinx RST files for lib/
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Running sphinx 1.8.5 updates all files (one known update: periods are no
longer escaped)
2019-07-05 17:21:31 +02:00
Daniel Blankenberg
f231e42c48
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into realtimetools
2019-07-05 16:43:01 +02:00
guerler
d8e089308a
Merge branch 'dev' into activate_toolshed
2019-07-05 14:09:08 +02:00
Peter Selten
bf0cc5cd28
Migrate documentation to docs website for data managers
2019-06-28 22:12:09 +02:00
selten
b2cfb961f2
Add remove operation to data managers and document data managers in regular Galaxy docs.
2019-06-28 20:02:37 +02:00
Sergey Golitsynskiy
6f167a2e8d
Run make config-rebuild to update config/docs
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This is to update galaxy.yml.sample and galaxy_options.rst to be
consistent with the latest update to config_schema.yml (#5651edc)
(generated with make config-rebuild)
2019-06-25 00:18:21 -04:00
Daniel Blankenberg
540b2b386b
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into realtimetools
2019-06-17 09:02:21 -04:00
Martin Cech
18ed4be13c
add 19.05 RN to index
2019-06-11 09:30:03 -04:00
John Chilton
8564eabb43
Merge branch 'release_19.05' into dev
2019-06-10 15:01:42 -04:00
Enis Afgan
9043dd18c6
[19.05] Add recent merges to release notes
2019-06-10 10:31:59 -04:00
Nicola Soranzo
dafe9dd30b
Merge branch 'release_19.05' into dev
2019-06-10 14:15:02 +01:00
Martin Cech
8f5a35e584
I love RST
2019-06-07 15:13:14 -04:00
Daniel Blankenberg
ccc4fc482f
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into realtimetools
2019-06-06 17:39:45 -04:00
Martin Cech
0a32933e72
fix link to user release notes
2019-06-05 16:59:46 -04:00
Martin Cech
47fd60fcce
fix link to user release notes
2019-06-05 16:58:53 -04:00
Martin Cech
20bdd5867a
Merge branch 'release_19.05' into dev
2019-06-05 16:35:35 -04:00
Martin Cech
5db219b1d2
add 19.05 RN to index
2019-06-05 15:53:05 -04:00
Martin Cech
e8311393e7
minor changes to RN
2019-06-05 15:48:33 -04:00
Enis Afgan
90f56ebc40
Fix link formats for mulled_containers.rst, minor rewording
2019-05-31 15:32:23 -04:00
Helena Rasche
4521614718
Enhance user facing release notes with gifs
2019-05-29 13:03:46 +02:00
John Chilton
aa4566e77e
First pass at writing 19.05 release notes.
2019-05-24 16:59:32 -04:00
John Chilton
0cf83ef345
Initial bootstrapping of 19.05 release notes...
2019-05-24 16:59:32 -04:00
Daniel Blankenberg
138e90413a
More doc formatting
2019-05-15 08:29:03 -04:00
Daniel Blankenberg
1c12c74576
update docs
2019-05-14 23:23:25 -04:00
Daniel Blankenberg
b0baaabf2c
notes on resource consumption; and condor
2019-05-14 08:04:55 -04:00
Daniel Blankenberg
5ee6e65d12
More doc info
2019-05-14 07:10:07 -04:00
Daniel Blankenberg
6cc43da9b7
Doc formatting
2019-05-13 17:03:00 -04:00
Martin Cech