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42,544 Commits 69 Branches 243 Tags
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Commit Graph
889 Commits
Author SHA1 Message Date
Martin Cech 8e4ca7b74c clarify that shed_data_manager is auto created 2019-10-10 16:18:14 -04:00
Nicola Soranzo 35fd602f87 Release notes fixes 2019-10-09 10:30:01 +01:00
Martin Cech 7efbd043ed add notice about Python 2/3 2019-10-07 12:06:33 -04:00
Martin Cech ccf33706d7 link to RN counterparts 2019-10-07 11:27:13 -04:00
Martin Cech 655df49d71 typos, hate rst 2019-10-07 11:06:25 -04:00
Martin Cech 7d81c2b48e include viz in the user highlights 
[ci skip]

drop the IT, for 19.09 that is more of a dev feature, save them for 20.01
 2019-10-03 15:27:34 -04:00
Martin Cech 760ae5b060 adjust small things 
[ci skip]
 2019-10-03 15:11:42 -04:00
Helena Rasche 7713c52ce3 ok maybe? 2019-10-03 20:45:21 +02:00
Martin Cech 27b7015974 add tool config changes notes from @natefoo 2019-10-02 17:39:42 -04:00
Martin Cech f2bc774100 unsupport mysql, add deprecations 2019-10-02 12:22:12 -04:00
John Chilton 7620880a9b Release notes for 19.09. 2019-10-01 13:42:46 -04:00
Martin Cech cf48ba33c3 Merge pull request #8610 from natefoo/autocreate-shed-tool-conf-fix 
[19.09] Fix autocreation of shed_*_conf.xml
 2019-09-17 13:52:09 -04:00
Nicola Soranzo f593b14641 Change MySQL from deprecated to unsupported 
Follow-up on https://github.com/galaxyproject/galaxy/pull/8407
 2019-09-13 10:16:03 +01:00
Nate Coraor be5aafd34b - Document and correct usage of shed_tool_config_file 
- Fix automatic creation of shed_*_conf.xml, migrated_tools_conf.xml
- Don't look in cwd for configs
 2019-09-10 15:54:53 -04:00
Nicola Soranzo 10e1945f36 Replaces tabs with spaces in apache.md 2019-09-09 11:38:20 +01:00
John Chilton 6264871fe8 Merge pull request #8574 from bgruening/it_cleanups 
Interactive tools cleanup
 2019-09-06 15:09:32 -04:00
John Chilton c8c34fa2f7 Enable mulled containers by default for 19.09. 2019-09-04 10:12:49 -04:00
Bjoern Gruening b5559e1a2e remove condor note 2019-08-31 14:01:59 +02:00
Bjoern Gruening c575bd8c2c RT to IT 2019-08-31 13:36:51 +02:00
John Chilton cc93eddc3d Merge pull request #8536 from ic4f/dev_misc_fix3 
Fix/cleanup a few minor things
 2019-08-30 16:12:18 -04:00
Martin CechandNicola Soranzo 16ebbadb99 add space 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2019-08-30 11:44:27 -04:00
Martin Cech 9ea9e89fd6 Merge branch 'issues' of github.com:martenson/galaxy into issues 2019-08-30 11:11:32 -04:00
Martin Cech 96077d385c clarify labeling structure without mandatory status label 2019-08-30 11:10:59 -04:00
Martin CechandNicola Soranzo 611288fe3d Update doc/source/project/issues.rst 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2019-08-29 15:38:18 -04:00
Martin CechandNicola Soranzo 7e0f78fe9b Update doc/source/project/issues.rst 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2019-08-29 15:38:12 -04:00
Martin CechandNicola Soranzo 46ec8c7a80 Update doc/source/project/issues.rst 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2019-08-29 15:38:05 -04:00
Martin Cech a486090686 update autoamtion rules 2019-08-29 13:58:45 -04:00
Martin Cech 9145a6bac5 revise roadmap 2019-08-29 13:58:32 -04:00
Martin Cech 2965edb896 drop status/review and make it a default 2019-08-29 13:52:50 -04:00
Sergey Golitsynskiy 2270dace26 Run make config-rebuild to reflect latest edits 2019-08-28 15:49:09 -04:00
selten 4d325460b0 Change 'ToolShed' to 'Tool Shed' 2019-08-24 12:14:21 +02:00
Peter Selten 53ad227750 Fix documentation more, spread data managers documentation over multiple lines so it's easier to read when editing. 2019-08-24 11:56:47 +02:00
selten 333950ec46 Update faq.rst 2019-08-23 21:28:03 +02:00
selten 9dc36d36c5 Update build runner documentation 2019-08-23 21:23:32 +02:00
selten 7448a11c39 Small changes to the data managers docs 2019-08-23 21:04:50 +02:00
selten f34b29fca3 Update documentation for clarity on docs.galaxyproject.org 2019-08-23 09:49:17 +02:00
John Chilton 6a1279e702 Merge pull request #8475 from ic4f/dev_config_reload 
Enable dynamic reloading of select config options
 2019-08-22 15:32:57 -04:00
John Chilton 5550b6b195 Merge pull request #8250 from selten/data-managers-update 
Data managers - allow removal of entries
 2019-08-22 11:47:57 -04:00
Sergey Golitsynskiy e73e024ade Merge remote-tracking branch 'upstream/dev' into dev_config_reload 2019-08-20 17:00:08 -04:00
Peter Selten 6f9a1528f0 Merge 2019-08-20 21:22:49 +02:00
Daniel Blankenberg 4bda4c92bd Make InteractiveTools enable-able. 2019-08-20 14:57:45 -04:00
Daniel Blankenberg c3c4aefcbd Merge branch 'dev' of https://github.com/galaxyproject/galaxy into realtimetools 2019-08-20 13:44:44 -04:00
Nicola Soranzo 75ebb58a2a Merge pull request #8446 from martenson/matthias 
[PROCEDURES] add Matthias Bernt to the committers group
 2019-08-20 14:25:56 +01:00
Sergey Golitsynskiy 05b1965365 Make edits based on code review (part 2) 
- Use default event handler instead of SimpleFileModifiedEventHandler
- Edit wording in galaxy/config_schema.yml
 2019-08-19 13:49:54 -04:00
Marius van den Beek 9eabc9c65f Merge pull request #8315 from natefoo/installable-config 
Config updates for installable Galaxy
 2019-08-19 16:54:37 +02:00
Sergey Golitsynskiy ac5538beec Make misc. edits based on code review 
- setting reloadable options simplified
- admin_users treated as special case; handled w/property + setter
- watch_config option changed to watch_core_config
- minor cosmetic changes
 2019-08-18 12:30:34 -04:00
Sergey Golitsynskiy 5188a42336 Enable dynamic reloading of select config options 2019-08-17 02:09:32 -04:00
Daniel Blankenberg 5ed5ff6d49 Merge branch 'dev' of https://github.com/galaxyproject/galaxy into realtimetools 2019-08-13 14:47:53 -04:00
guerler 626fbdd5b3 Fix comment in config schema for visualization visibility option 2019-08-12 15:22:47 -04:00
guerler 40ea2f695f Add configuration option to hide visualizations from masthead 2019-08-12 15:12:19 -04:00