mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
Update Sphinx RST files for lib/
Running sphinx 1.8.5 updates all files (one known update: periods are no longer escaped)
This commit is contained in:
Sergey Golitsynskiy
@@ -1,5 +1,5 @@
|
||||
galaxy\.actions package
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||||
=======================
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||||
galaxy.actions package
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||||
======================
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||||
|
||||
.. automodule:: galaxy.actions
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||||
:members:
|
||||
@@ -9,16 +9,16 @@ galaxy\.actions package
|
||||
Submodules
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||||
----------
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||||
|
||||
galaxy\.actions\.admin module
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||||
-----------------------------
|
||||
galaxy.actions.admin module
|
||||
---------------------------
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||||
|
||||
.. automodule:: galaxy.actions.admin
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.actions\.library module
|
||||
-------------------------------
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||||
galaxy.actions.library module
|
||||
-----------------------------
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||||
|
||||
.. automodule:: galaxy.actions.library
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.auth\.providers package
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||||
===============================
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||||
galaxy.auth.providers package
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||||
=============================
|
||||
|
||||
.. automodule:: galaxy.auth.providers
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||||
:members:
|
||||
@@ -9,32 +9,32 @@ galaxy\.auth\.providers package
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||||
Submodules
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||||
----------
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||||
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galaxy\.auth\.providers\.alwaysreject module
|
||||
--------------------------------------------
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||||
galaxy.auth.providers.alwaysreject module
|
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-----------------------------------------
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||||
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.. automodule:: galaxy.auth.providers.alwaysreject
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||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.auth\.providers\.ldap\_ad module
|
||||
----------------------------------------
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||||
galaxy.auth.providers.ldap\_ad module
|
||||
-------------------------------------
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||||
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||||
.. automodule:: galaxy.auth.providers.ldap_ad
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||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.auth\.providers\.localdb module
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---------------------------------------
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||||
galaxy.auth.providers.localdb module
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------------------------------------
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||||
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||||
.. automodule:: galaxy.auth.providers.localdb
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||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.auth\.providers\.pam\_auth module
|
||||
-----------------------------------------
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||||
galaxy.auth.providers.pam\_auth module
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--------------------------------------
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||||
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.. automodule:: galaxy.auth.providers.pam_auth
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||||
:members:
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||||
|
||||
@@ -1,5 +1,5 @@
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||||
galaxy\.auth package
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====================
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||||
galaxy.auth package
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===================
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||||
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.. automodule:: galaxy.auth
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:members:
|
||||
@@ -16,8 +16,8 @@ Subpackages
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Submodules
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----------
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||||
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galaxy\.auth\.util module
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-------------------------
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galaxy.auth.util module
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-----------------------
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.. automodule:: galaxy.auth.util
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:members:
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||||
|
||||
@@ -1,5 +1,5 @@
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galaxy\.authnz package
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======================
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galaxy.authnz package
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=====================
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||||
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.. automodule:: galaxy.authnz
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:members:
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||||
@@ -9,16 +9,24 @@ galaxy\.authnz package
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||||
Submodules
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----------
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galaxy\.authnz\.managers module
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-------------------------------
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galaxy.authnz.custos\_authnz module
|
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-----------------------------------
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.. automodule:: galaxy.authnz.custos_authnz
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||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.authnz.managers module
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-----------------------------
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||||
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.. automodule:: galaxy.authnz.managers
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:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.authnz\.psa\_authnz module
|
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----------------------------------
|
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galaxy.authnz.psa\_authnz module
|
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--------------------------------
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||||
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.. automodule:: galaxy.authnz.psa_authnz
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:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
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galaxy\.containers package
|
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==========================
|
||||
galaxy.containers package
|
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=========================
|
||||
|
||||
.. automodule:: galaxy.containers
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||||
:members:
|
||||
@@ -9,32 +9,32 @@ galaxy\.containers package
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Submodules
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||||
----------
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||||
|
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galaxy\.containers\.docker module
|
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---------------------------------
|
||||
galaxy.containers.docker module
|
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-------------------------------
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||||
|
||||
.. automodule:: galaxy.containers.docker
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.containers\.docker\_decorators module
|
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---------------------------------------------
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||||
galaxy.containers.docker\_decorators module
|
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-------------------------------------------
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||||
|
||||
.. automodule:: galaxy.containers.docker_decorators
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.containers\.docker\_model module
|
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----------------------------------------
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||||
galaxy.containers.docker\_model module
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--------------------------------------
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||||
|
||||
.. automodule:: galaxy.containers.docker_model
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||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.containers\.docker\_swarm module
|
||||
----------------------------------------
|
||||
galaxy.containers.docker\_swarm module
|
||||
--------------------------------------
|
||||
|
||||
.. automodule:: galaxy.containers.docker_swarm
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||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
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galaxy\.datatypes\.converters package
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=====================================
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galaxy.datatypes.converters package
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===================================
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||||
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.. automodule:: galaxy.datatypes.converters
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:members:
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||||
@@ -9,256 +9,264 @@ galaxy\.datatypes\.converters package
|
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Submodules
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----------
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galaxy\.datatypes\.converters\.bed\_to\_gff\_converter module
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-------------------------------------------------------------
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galaxy.datatypes.converters.bed\_to\_gff\_converter module
|
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----------------------------------------------------------
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|
||||
.. automodule:: galaxy.datatypes.converters.bed_to_gff_converter
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.bedgraph\_to\_array\_tree\_converter module
|
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--------------------------------------------------------------------------
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||||
galaxy.datatypes.converters.bedgraph\_to\_array\_tree\_converter module
|
||||
-----------------------------------------------------------------------
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||||
|
||||
.. automodule:: galaxy.datatypes.converters.bedgraph_to_array_tree_converter
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||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.bgzip module
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-------------------------------------------
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galaxy.datatypes.converters.bgzip module
|
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----------------------------------------
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|
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.. automodule:: galaxy.datatypes.converters.bgzip
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:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.cram\_to\_bam module
|
||||
---------------------------------------------------
|
||||
galaxy.datatypes.converters.cram\_to\_bam module
|
||||
------------------------------------------------
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||||
|
||||
.. automodule:: galaxy.datatypes.converters.cram_to_bam
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.fasta\_to\_len module
|
||||
----------------------------------------------------
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||||
galaxy.datatypes.converters.fasta\_to\_len module
|
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-------------------------------------------------
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||||
|
||||
.. automodule:: galaxy.datatypes.converters.fasta_to_len
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.fasta\_to\_tabular\_converter module
|
||||
-------------------------------------------------------------------
|
||||
galaxy.datatypes.converters.fasta\_to\_tabular\_converter module
|
||||
----------------------------------------------------------------
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||||
|
||||
.. automodule:: galaxy.datatypes.converters.fasta_to_tabular_converter
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.fastq\_to\_fqtoc module
|
||||
------------------------------------------------------
|
||||
galaxy.datatypes.converters.fastq\_to\_fqtoc module
|
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---------------------------------------------------
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||||
|
||||
.. automodule:: galaxy.datatypes.converters.fastq_to_fqtoc
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.fastqsolexa\_to\_fasta\_converter module
|
||||
-----------------------------------------------------------------------
|
||||
galaxy.datatypes.converters.fastqsolexa\_to\_fasta\_converter module
|
||||
--------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.fastqsolexa_to_fasta_converter
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.fastqsolexa\_to\_qual\_converter module
|
||||
----------------------------------------------------------------------
|
||||
galaxy.datatypes.converters.fastqsolexa\_to\_qual\_converter module
|
||||
-------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.fastqsolexa_to_qual_converter
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.gff\_to\_bed\_converter module
|
||||
-------------------------------------------------------------
|
||||
galaxy.datatypes.converters.gff\_to\_bed\_converter module
|
||||
----------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.gff_to_bed_converter
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.gff\_to\_interval\_index\_converter module
|
||||
-------------------------------------------------------------------------
|
||||
galaxy.datatypes.converters.gff\_to\_interval\_index\_converter module
|
||||
----------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.gff_to_interval_index_converter
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.interval\_to\_bed\_converter module
|
||||
------------------------------------------------------------------
|
||||
galaxy.datatypes.converters.interval\_to\_bed\_converter module
|
||||
---------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.interval_to_bed_converter
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.interval\_to\_bedstrict\_converter module
|
||||
------------------------------------------------------------------------
|
||||
galaxy.datatypes.converters.interval\_to\_bedstrict\_converter module
|
||||
---------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.interval_to_bedstrict_converter
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.interval\_to\_coverage module
|
||||
------------------------------------------------------------
|
||||
galaxy.datatypes.converters.interval\_to\_coverage module
|
||||
---------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.interval_to_coverage
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.interval\_to\_fli module
|
||||
-------------------------------------------------------
|
||||
galaxy.datatypes.converters.interval\_to\_fli module
|
||||
----------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.interval_to_fli
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.interval\_to\_interval\_index\_converter module
|
||||
------------------------------------------------------------------------------
|
||||
galaxy.datatypes.converters.interval\_to\_interval\_index\_converter module
|
||||
---------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.interval_to_interval_index_converter
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.interval\_to\_tabix\_converter module
|
||||
--------------------------------------------------------------------
|
||||
galaxy.datatypes.converters.interval\_to\_tabix\_converter module
|
||||
-----------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.interval_to_tabix_converter
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.lped\_to\_fped\_converter module
|
||||
---------------------------------------------------------------
|
||||
galaxy.datatypes.converters.lped\_to\_fped\_converter module
|
||||
------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.lped_to_fped_converter
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.lped\_to\_pbed\_converter module
|
||||
---------------------------------------------------------------
|
||||
galaxy.datatypes.converters.lped\_to\_pbed\_converter module
|
||||
------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.lped_to_pbed_converter
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.maf\_to\_fasta\_converter module
|
||||
---------------------------------------------------------------
|
||||
galaxy.datatypes.converters.maf\_to\_fasta\_converter module
|
||||
------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.maf_to_fasta_converter
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.maf\_to\_interval\_converter module
|
||||
------------------------------------------------------------------
|
||||
galaxy.datatypes.converters.maf\_to\_interval\_converter module
|
||||
---------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.maf_to_interval_converter
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.pbed\_ldreduced\_converter module
|
||||
----------------------------------------------------------------
|
||||
galaxy.datatypes.converters.pbed\_ldreduced\_converter module
|
||||
-------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.pbed_ldreduced_converter
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.pbed\_to\_lped\_converter module
|
||||
---------------------------------------------------------------
|
||||
galaxy.datatypes.converters.pbed\_to\_lped\_converter module
|
||||
------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.pbed_to_lped_converter
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.picard\_interval\_list\_to\_bed6\_converter module
|
||||
---------------------------------------------------------------------------------
|
||||
galaxy.datatypes.converters.picard\_interval\_list\_to\_bed6\_converter module
|
||||
------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.picard_interval_list_to_bed6_converter
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.pileup\_to\_interval\_index\_converter module
|
||||
----------------------------------------------------------------------------
|
||||
galaxy.datatypes.converters.pileup\_to\_interval\_index\_converter module
|
||||
-------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.pileup_to_interval_index_converter
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.ref\_to\_seq\_taxonomy\_converter module
|
||||
-----------------------------------------------------------------------
|
||||
galaxy.datatypes.converters.ref\_to\_seq\_taxonomy\_converter module
|
||||
--------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.ref_to_seq_taxonomy_converter
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.sam\_to\_bam module
|
||||
--------------------------------------------------
|
||||
galaxy.datatypes.converters.sam\_to\_bam module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.sam_to_bam
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.tabular\_to\_dbnsfp module
|
||||
---------------------------------------------------------
|
||||
galaxy.datatypes.converters.tabular\_csv module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.tabular_csv
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.datatypes.converters.tabular\_to\_dbnsfp module
|
||||
------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.tabular_to_dbnsfp
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.vcf\_to\_interval\_index\_converter module
|
||||
-------------------------------------------------------------------------
|
||||
galaxy.datatypes.converters.vcf\_to\_interval\_index\_converter module
|
||||
----------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.vcf_to_interval_index_converter
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.vcf\_to\_vcf\_bgzip module
|
||||
---------------------------------------------------------
|
||||
galaxy.datatypes.converters.vcf\_to\_vcf\_bgzip module
|
||||
------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.vcf_to_vcf_bgzip
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.wiggle\_to\_array\_tree\_converter module
|
||||
------------------------------------------------------------------------
|
||||
galaxy.datatypes.converters.wiggle\_to\_array\_tree\_converter module
|
||||
---------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.wiggle_to_array_tree_converter
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.converters\.wiggle\_to\_simple\_converter module
|
||||
-------------------------------------------------------------------
|
||||
galaxy.datatypes.converters.wiggle\_to\_simple\_converter module
|
||||
----------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.converters.wiggle_to_simple_converter
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.datatypes\.dataproviders package
|
||||
========================================
|
||||
galaxy.datatypes.dataproviders package
|
||||
======================================
|
||||
|
||||
.. automodule:: galaxy.datatypes.dataproviders
|
||||
:members:
|
||||
@@ -9,72 +9,72 @@ galaxy\.datatypes\.dataproviders package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.datatypes\.dataproviders\.base module
|
||||
---------------------------------------------
|
||||
galaxy.datatypes.dataproviders.base module
|
||||
------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.dataproviders.base
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.dataproviders\.chunk module
|
||||
----------------------------------------------
|
||||
galaxy.datatypes.dataproviders.chunk module
|
||||
-------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.dataproviders.chunk
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.dataproviders\.column module
|
||||
-----------------------------------------------
|
||||
galaxy.datatypes.dataproviders.column module
|
||||
--------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.dataproviders.column
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.dataproviders\.dataset module
|
||||
------------------------------------------------
|
||||
galaxy.datatypes.dataproviders.dataset module
|
||||
---------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.dataproviders.dataset
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.dataproviders\.decorators module
|
||||
---------------------------------------------------
|
||||
galaxy.datatypes.dataproviders.decorators module
|
||||
------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.dataproviders.decorators
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.dataproviders\.exceptions module
|
||||
---------------------------------------------------
|
||||
galaxy.datatypes.dataproviders.exceptions module
|
||||
------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.dataproviders.exceptions
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.dataproviders\.external module
|
||||
-------------------------------------------------
|
||||
galaxy.datatypes.dataproviders.external module
|
||||
----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.dataproviders.external
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.dataproviders\.hierarchy module
|
||||
--------------------------------------------------
|
||||
galaxy.datatypes.dataproviders.hierarchy module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.dataproviders.hierarchy
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.dataproviders\.line module
|
||||
---------------------------------------------
|
||||
galaxy.datatypes.dataproviders.line module
|
||||
------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.dataproviders.line
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.datatypes\.display\_applications package
|
||||
================================================
|
||||
galaxy.datatypes.display\_applications package
|
||||
==============================================
|
||||
|
||||
.. automodule:: galaxy.datatypes.display_applications
|
||||
:members:
|
||||
@@ -9,24 +9,24 @@ galaxy\.datatypes\.display\_applications package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.datatypes\.display\_applications\.application module
|
||||
------------------------------------------------------------
|
||||
galaxy.datatypes.display\_applications.application module
|
||||
---------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.display_applications.application
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.display\_applications\.parameters module
|
||||
-----------------------------------------------------------
|
||||
galaxy.datatypes.display\_applications.parameters module
|
||||
--------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.display_applications.parameters
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.display\_applications\.util module
|
||||
-----------------------------------------------------
|
||||
galaxy.datatypes.display\_applications.util module
|
||||
--------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.display_applications.util
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.datatypes package
|
||||
=========================
|
||||
galaxy.datatypes package
|
||||
========================
|
||||
|
||||
.. automodule:: galaxy.datatypes
|
||||
:members:
|
||||
@@ -19,272 +19,296 @@ Subpackages
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.datatypes\.annotation module
|
||||
------------------------------------
|
||||
galaxy.datatypes.annotation module
|
||||
----------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.annotation
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.anvio module
|
||||
-------------------------------
|
||||
galaxy.datatypes.anvio module
|
||||
-----------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.anvio
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.assembly module
|
||||
----------------------------------
|
||||
galaxy.datatypes.assembly module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.assembly
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.binary module
|
||||
--------------------------------
|
||||
galaxy.datatypes.binary module
|
||||
------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.binary
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.blast module
|
||||
-------------------------------
|
||||
galaxy.datatypes.blast module
|
||||
-----------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.blast
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.checkers module
|
||||
----------------------------------
|
||||
galaxy.datatypes.checkers module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.checkers
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.chrominfo module
|
||||
-----------------------------------
|
||||
galaxy.datatypes.chrominfo module
|
||||
---------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.chrominfo
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.constructive\_solid\_geometry module
|
||||
-------------------------------------------------------
|
||||
galaxy.datatypes.constructive\_solid\_geometry module
|
||||
-----------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.constructive_solid_geometry
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.coverage module
|
||||
----------------------------------
|
||||
galaxy.datatypes.coverage module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.coverage
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.data module
|
||||
------------------------------
|
||||
galaxy.datatypes.data module
|
||||
----------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.data
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.genetics module
|
||||
----------------------------------
|
||||
galaxy.datatypes.genetics module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.genetics
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.graph module
|
||||
-------------------------------
|
||||
galaxy.datatypes.gis module
|
||||
---------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.gis
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.datatypes.graph module
|
||||
-----------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.graph
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.images module
|
||||
--------------------------------
|
||||
galaxy.datatypes.images module
|
||||
------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.images
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.interval module
|
||||
----------------------------------
|
||||
galaxy.datatypes.interval module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.interval
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.isa module
|
||||
-----------------------------
|
||||
galaxy.datatypes.isa module
|
||||
---------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.isa
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.metadata module
|
||||
----------------------------------
|
||||
galaxy.datatypes.metadata module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.metadata
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.molecules module
|
||||
galaxy.datatypes.microarrays module
|
||||
-----------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.microarrays
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.datatypes.molecules module
|
||||
---------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.molecules
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.mothur module
|
||||
--------------------------------
|
||||
galaxy.datatypes.mothur module
|
||||
------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.mothur
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.msa module
|
||||
-----------------------------
|
||||
galaxy.datatypes.msa module
|
||||
---------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.msa
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.neo4j module
|
||||
-------------------------------
|
||||
galaxy.datatypes.neo4j module
|
||||
-----------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.neo4j
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.ngsindex module
|
||||
----------------------------------
|
||||
galaxy.datatypes.ngsindex module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.ngsindex
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.phylip module
|
||||
--------------------------------
|
||||
galaxy.datatypes.phylip module
|
||||
------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.phylip
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.plant\_tribes module
|
||||
---------------------------------------
|
||||
galaxy.datatypes.plant\_tribes module
|
||||
-------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.plant_tribes
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.proteomics module
|
||||
------------------------------------
|
||||
galaxy.datatypes.proteomics module
|
||||
----------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.proteomics
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.qualityscore module
|
||||
--------------------------------------
|
||||
galaxy.datatypes.qualityscore module
|
||||
------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.qualityscore
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.registry module
|
||||
----------------------------------
|
||||
galaxy.datatypes.registry module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.registry
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.sequence module
|
||||
----------------------------------
|
||||
galaxy.datatypes.sequence module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.sequence
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.sniff module
|
||||
-------------------------------
|
||||
galaxy.datatypes.sniff module
|
||||
-----------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.sniff
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.tabular module
|
||||
---------------------------------
|
||||
galaxy.datatypes.spaln module
|
||||
-----------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.spaln
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.datatypes.tabular module
|
||||
-------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.tabular
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.text module
|
||||
------------------------------
|
||||
galaxy.datatypes.text module
|
||||
----------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.text
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.tracks module
|
||||
--------------------------------
|
||||
galaxy.datatypes.tracks module
|
||||
------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.tracks
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.triples module
|
||||
---------------------------------
|
||||
galaxy.datatypes.triples module
|
||||
-------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.triples
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.upload\_util module
|
||||
--------------------------------------
|
||||
galaxy.datatypes.upload\_util module
|
||||
------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.upload_util
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.xml module
|
||||
-----------------------------
|
||||
galaxy.datatypes.xml module
|
||||
---------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.xml
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.datatypes\.util package
|
||||
===============================
|
||||
galaxy.datatypes.util package
|
||||
=============================
|
||||
|
||||
.. automodule:: galaxy.datatypes.util
|
||||
:members:
|
||||
@@ -9,16 +9,16 @@ galaxy\.datatypes\.util package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.datatypes\.util\.generic\_util module
|
||||
---------------------------------------------
|
||||
galaxy.datatypes.util.generic\_util module
|
||||
------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.util.generic_util
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.datatypes\.util\.gff\_util module
|
||||
-----------------------------------------
|
||||
galaxy.datatypes.util.gff\_util module
|
||||
--------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.util.gff_util
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.dependencies package
|
||||
============================
|
||||
galaxy.dependencies package
|
||||
===========================
|
||||
|
||||
.. automodule:: galaxy.dependencies
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.eggs package
|
||||
====================
|
||||
galaxy.eggs package
|
||||
===================
|
||||
|
||||
.. automodule:: galaxy.eggs
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.exceptions package
|
||||
==========================
|
||||
galaxy.exceptions package
|
||||
=========================
|
||||
|
||||
.. automodule:: galaxy.exceptions
|
||||
:members:
|
||||
@@ -9,8 +9,8 @@ galaxy\.exceptions package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.exceptions\.error\_codes module
|
||||
---------------------------------------
|
||||
galaxy.exceptions.error\_codes module
|
||||
-------------------------------------
|
||||
|
||||
.. automodule:: galaxy.exceptions.error_codes
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.forms package
|
||||
=====================
|
||||
galaxy.forms package
|
||||
====================
|
||||
|
||||
.. automodule:: galaxy.forms
|
||||
:members:
|
||||
@@ -9,8 +9,8 @@ galaxy\.forms package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.forms\.forms module
|
||||
---------------------------
|
||||
galaxy.forms.forms module
|
||||
-------------------------
|
||||
|
||||
.. automodule:: galaxy.forms.forms
|
||||
:members:
|
||||
|
||||
@@ -0,0 +1,28 @@
|
||||
galaxy.job\_execution package
|
||||
=============================
|
||||
|
||||
.. automodule:: galaxy.job_execution
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.job\_execution.datasets module
|
||||
-------------------------------------
|
||||
|
||||
.. automodule:: galaxy.job_execution.datasets
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.job\_execution.output\_collect module
|
||||
--------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.job_execution.output_collect
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -0,0 +1,44 @@
|
||||
galaxy.job\_metrics.collectl package
|
||||
====================================
|
||||
|
||||
.. automodule:: galaxy.job_metrics.collectl
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.job\_metrics.collectl.cli module
|
||||
---------------------------------------
|
||||
|
||||
.. automodule:: galaxy.job_metrics.collectl.cli
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.job\_metrics.collectl.processes module
|
||||
---------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.job_metrics.collectl.processes
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.job\_metrics.collectl.stats module
|
||||
-----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.job_metrics.collectl.stats
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.job\_metrics.collectl.subsystems module
|
||||
----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.job_metrics.collectl.subsystems
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -0,0 +1,76 @@
|
||||
galaxy.job\_metrics.instrumenters package
|
||||
=========================================
|
||||
|
||||
.. automodule:: galaxy.job_metrics.instrumenters
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.job\_metrics.instrumenters.cgroup module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.job_metrics.instrumenters.cgroup
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.job\_metrics.instrumenters.collectl module
|
||||
-------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.job_metrics.instrumenters.collectl
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.job\_metrics.instrumenters.core module
|
||||
---------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.job_metrics.instrumenters.core
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.job\_metrics.instrumenters.cpuinfo module
|
||||
------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.job_metrics.instrumenters.cpuinfo
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.job\_metrics.instrumenters.env module
|
||||
--------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.job_metrics.instrumenters.env
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.job\_metrics.instrumenters.hostname module
|
||||
-------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.job_metrics.instrumenters.hostname
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.job\_metrics.instrumenters.meminfo module
|
||||
------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.job_metrics.instrumenters.meminfo
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.job\_metrics.instrumenters.uname module
|
||||
----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.job_metrics.instrumenters.uname
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -0,0 +1,28 @@
|
||||
galaxy.job\_metrics package
|
||||
===========================
|
||||
|
||||
.. automodule:: galaxy.job_metrics
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Subpackages
|
||||
-----------
|
||||
|
||||
.. toctree::
|
||||
|
||||
galaxy.job_metrics.collectl
|
||||
galaxy.job_metrics.instrumenters
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.job\_metrics.formatting module
|
||||
-------------------------------------
|
||||
|
||||
.. automodule:: galaxy.job_metrics.formatting
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.jobs\.actions package
|
||||
=============================
|
||||
galaxy.jobs.actions package
|
||||
===========================
|
||||
|
||||
.. automodule:: galaxy.jobs.actions
|
||||
:members:
|
||||
@@ -9,8 +9,8 @@ galaxy\.jobs\.actions package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.jobs\.actions\.post module
|
||||
----------------------------------
|
||||
galaxy.jobs.actions.post module
|
||||
-------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.actions.post
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.jobs package
|
||||
====================
|
||||
galaxy.jobs package
|
||||
===================
|
||||
|
||||
.. automodule:: galaxy.jobs
|
||||
:members:
|
||||
@@ -12,87 +12,71 @@ Subpackages
|
||||
.. toctree::
|
||||
|
||||
galaxy.jobs.actions
|
||||
galaxy.jobs.metrics
|
||||
galaxy.jobs.rules
|
||||
galaxy.jobs.runners
|
||||
galaxy.jobs.splitters
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.jobs\.command\_factory module
|
||||
-------------------------------------
|
||||
galaxy.jobs.command\_factory module
|
||||
-----------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.command_factory
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.datasets module
|
||||
-----------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.datasets
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.dynamic\_tool\_destination module
|
||||
-----------------------------------------------
|
||||
galaxy.jobs.dynamic\_tool\_destination module
|
||||
---------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.dynamic_tool_destination
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.handler module
|
||||
----------------------------
|
||||
galaxy.jobs.handler module
|
||||
--------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.handler
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.manager module
|
||||
----------------------------
|
||||
galaxy.jobs.manager module
|
||||
--------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.manager
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.mapper module
|
||||
---------------------------
|
||||
galaxy.jobs.mapper module
|
||||
-------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.mapper
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.output\_checker module
|
||||
------------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.output_checker
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.rule\_helper module
|
||||
---------------------------------
|
||||
galaxy.jobs.rule\_helper module
|
||||
-------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.rule_helper
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.stock\_rules module
|
||||
---------------------------------
|
||||
galaxy.jobs.stock\_rules module
|
||||
-------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.stock_rules
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.transfer\_manager module
|
||||
--------------------------------------
|
||||
galaxy.jobs.transfer\_manager module
|
||||
------------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.transfer_manager
|
||||
:members:
|
||||
|
||||
@@ -0,0 +1,8 @@
|
||||
galaxy.jobs.rules package
|
||||
=========================
|
||||
|
||||
.. automodule:: galaxy.jobs.rules
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.jobs\.runners package
|
||||
=============================
|
||||
galaxy.jobs.runners package
|
||||
===========================
|
||||
|
||||
.. automodule:: galaxy.jobs.runners
|
||||
:members:
|
||||
@@ -17,104 +17,104 @@ Subpackages
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.jobs\.runners\.chronos module
|
||||
-------------------------------------
|
||||
galaxy.jobs.runners.chronos module
|
||||
----------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.chronos
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.runners\.cli module
|
||||
---------------------------------
|
||||
galaxy.jobs.runners.cli module
|
||||
------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.cli
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.runners\.condor module
|
||||
------------------------------------
|
||||
galaxy.jobs.runners.condor module
|
||||
---------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.condor
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.runners\.drmaa module
|
||||
-----------------------------------
|
||||
galaxy.jobs.runners.drmaa module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.drmaa
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.runners\.godocker module
|
||||
--------------------------------------
|
||||
galaxy.jobs.runners.godocker module
|
||||
-----------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.godocker
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.runners\.kubernetes module
|
||||
----------------------------------------
|
||||
galaxy.jobs.runners.kubernetes module
|
||||
-------------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.kubernetes
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.runners\.local module
|
||||
-----------------------------------
|
||||
galaxy.jobs.runners.local module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.local
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.runners\.pbs module
|
||||
---------------------------------
|
||||
galaxy.jobs.runners.pbs module
|
||||
------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.pbs
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.runners\.pulsar module
|
||||
------------------------------------
|
||||
galaxy.jobs.runners.pulsar module
|
||||
---------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.pulsar
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.runners\.slurm module
|
||||
-----------------------------------
|
||||
galaxy.jobs.runners.slurm module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.slurm
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.runners\.state\_handler\_factory module
|
||||
-----------------------------------------------------
|
||||
galaxy.jobs.runners.state\_handler\_factory module
|
||||
--------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.state_handler_factory
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.runners\.tasks module
|
||||
-----------------------------------
|
||||
galaxy.jobs.runners.tasks module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.tasks
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.runners\.univa module
|
||||
-----------------------------------
|
||||
galaxy.jobs.runners.univa module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.univa
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.jobs\.runners\.state\_handlers package
|
||||
==============================================
|
||||
galaxy.jobs.runners.state\_handlers package
|
||||
===========================================
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.state_handlers
|
||||
:members:
|
||||
@@ -9,8 +9,8 @@ galaxy\.jobs\.runners\.state\_handlers package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.jobs\.runners\.state\_handlers\.resubmit module
|
||||
-------------------------------------------------------
|
||||
galaxy.jobs.runners.state\_handlers.resubmit module
|
||||
---------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.state_handlers.resubmit
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.jobs\.runners\.util\.cli\.job package
|
||||
=============================================
|
||||
galaxy.jobs.runners.util.cli.job package
|
||||
========================================
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.util.cli.job
|
||||
:members:
|
||||
@@ -9,32 +9,32 @@ galaxy\.jobs\.runners\.util\.cli\.job package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.jobs\.runners\.util\.cli\.job\.lsf module
|
||||
-------------------------------------------------
|
||||
galaxy.jobs.runners.util.cli.job.lsf module
|
||||
-------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.util.cli.job.lsf
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.runners\.util\.cli\.job\.slurm module
|
||||
---------------------------------------------------
|
||||
galaxy.jobs.runners.util.cli.job.slurm module
|
||||
---------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.util.cli.job.slurm
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.runners\.util\.cli\.job\.slurm\_torque module
|
||||
-----------------------------------------------------------
|
||||
galaxy.jobs.runners.util.cli.job.slurm\_torque module
|
||||
-----------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.util.cli.job.slurm_torque
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.runners\.util\.cli\.job\.torque module
|
||||
----------------------------------------------------
|
||||
galaxy.jobs.runners.util.cli.job.torque module
|
||||
----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.util.cli.job.torque
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.jobs\.runners\.util\.cli package
|
||||
========================================
|
||||
galaxy.jobs.runners.util.cli package
|
||||
====================================
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.util.cli
|
||||
:members:
|
||||
@@ -17,8 +17,8 @@ Subpackages
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.jobs\.runners\.util\.cli\.factory module
|
||||
------------------------------------------------
|
||||
galaxy.jobs.runners.util.cli.factory module
|
||||
-------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.util.cli.factory
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.jobs\.runners\.util\.cli\.shell package
|
||||
===============================================
|
||||
galaxy.jobs.runners.util.cli.shell package
|
||||
==========================================
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.util.cli.shell
|
||||
:members:
|
||||
@@ -9,16 +9,16 @@ galaxy\.jobs\.runners\.util\.cli\.shell package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.jobs\.runners\.util\.cli\.shell\.local module
|
||||
-----------------------------------------------------
|
||||
galaxy.jobs.runners.util.cli.shell.local module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.util.cli.shell.local
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.runners\.util\.cli\.shell\.rsh module
|
||||
---------------------------------------------------
|
||||
galaxy.jobs.runners.util.cli.shell.rsh module
|
||||
---------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.util.cli.shell.rsh
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.jobs\.runners\.util\.condor package
|
||||
===========================================
|
||||
galaxy.jobs.runners.util.condor package
|
||||
=======================================
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.util.condor
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.jobs\.runners\.util\.job\_script package
|
||||
================================================
|
||||
galaxy.jobs.runners.util.job\_script package
|
||||
============================================
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.util.job_script
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.jobs\.runners\.util package
|
||||
===================================
|
||||
galaxy.jobs.runners.util package
|
||||
================================
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.util
|
||||
:members:
|
||||
@@ -18,32 +18,40 @@ Subpackages
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.jobs\.runners\.util\.env module
|
||||
---------------------------------------
|
||||
galaxy.jobs.runners.util.env module
|
||||
-----------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.util.env
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.runners\.util\.external module
|
||||
--------------------------------------------
|
||||
galaxy.jobs.runners.util.external module
|
||||
----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.util.external
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.runners\.util\.kill module
|
||||
----------------------------------------
|
||||
galaxy.jobs.runners.util.kill module
|
||||
------------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.util.kill
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.runners\.util\.sudo module
|
||||
----------------------------------------
|
||||
galaxy.jobs.runners.util.pykube\_util module
|
||||
--------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.util.pykube_util
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.jobs.runners.util.sudo module
|
||||
------------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.runners.util.sudo
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.jobs\.splitters package
|
||||
===============================
|
||||
galaxy.jobs.splitters package
|
||||
=============================
|
||||
|
||||
.. automodule:: galaxy.jobs.splitters
|
||||
:members:
|
||||
@@ -9,16 +9,16 @@ galaxy\.jobs\.splitters package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.jobs\.splitters\.basic module
|
||||
-------------------------------------
|
||||
galaxy.jobs.splitters.basic module
|
||||
----------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.splitters.basic
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.jobs\.splitters\.multi module
|
||||
-------------------------------------
|
||||
galaxy.jobs.splitters.multi module
|
||||
----------------------------------
|
||||
|
||||
.. automodule:: galaxy.jobs.splitters.multi
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.managers package
|
||||
========================
|
||||
galaxy.managers package
|
||||
=======================
|
||||
|
||||
.. automodule:: galaxy.managers
|
||||
:members:
|
||||
@@ -9,264 +9,264 @@ galaxy\.managers package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.managers\.annotatable module
|
||||
------------------------------------
|
||||
galaxy.managers.annotatable module
|
||||
----------------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.annotatable
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.api\_keys module
|
||||
----------------------------------
|
||||
galaxy.managers.api\_keys module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.api_keys
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.base module
|
||||
-----------------------------
|
||||
galaxy.managers.base module
|
||||
---------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.base
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.citations module
|
||||
----------------------------------
|
||||
galaxy.managers.citations module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.citations
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.cloud module
|
||||
------------------------------
|
||||
galaxy.managers.cloud module
|
||||
----------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.cloud
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.cloudauthzs module
|
||||
------------------------------------
|
||||
galaxy.managers.cloudauthzs module
|
||||
----------------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.cloudauthzs
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.collections module
|
||||
------------------------------------
|
||||
galaxy.managers.collections module
|
||||
----------------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.collections
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.collections\_util module
|
||||
------------------------------------------
|
||||
galaxy.managers.collections\_util module
|
||||
----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.collections_util
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.configuration module
|
||||
--------------------------------------
|
||||
galaxy.managers.configuration module
|
||||
------------------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.configuration
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.containers module
|
||||
-----------------------------------
|
||||
galaxy.managers.containers module
|
||||
---------------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.containers
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.context module
|
||||
--------------------------------
|
||||
galaxy.managers.context module
|
||||
------------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.context
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.datasets module
|
||||
---------------------------------
|
||||
galaxy.managers.datasets module
|
||||
-------------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.datasets
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.deletable module
|
||||
----------------------------------
|
||||
galaxy.managers.deletable module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.deletable
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.folders module
|
||||
--------------------------------
|
||||
galaxy.managers.folders module
|
||||
------------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.folders
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.hdas module
|
||||
-----------------------------
|
||||
galaxy.managers.hdas module
|
||||
---------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.hdas
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.hdcas module
|
||||
------------------------------
|
||||
galaxy.managers.hdcas module
|
||||
----------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.hdcas
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.histories module
|
||||
----------------------------------
|
||||
galaxy.managers.histories module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.histories
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.history\_contents module
|
||||
------------------------------------------
|
||||
galaxy.managers.history\_contents module
|
||||
----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.history_contents
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.jobs module
|
||||
-----------------------------
|
||||
galaxy.managers.jobs module
|
||||
---------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.jobs
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.lddas module
|
||||
------------------------------
|
||||
galaxy.managers.lddas module
|
||||
----------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.lddas
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.libraries module
|
||||
----------------------------------
|
||||
galaxy.managers.libraries module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.libraries
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.library\_datasets module
|
||||
------------------------------------------
|
||||
galaxy.managers.library\_datasets module
|
||||
----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.library_datasets
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.pages module
|
||||
------------------------------
|
||||
galaxy.managers.pages module
|
||||
----------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.pages
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.ratable module
|
||||
--------------------------------
|
||||
galaxy.managers.ratable module
|
||||
------------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.ratable
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.rbac\_secured module
|
||||
--------------------------------------
|
||||
galaxy.managers.rbac\_secured module
|
||||
------------------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.rbac_secured
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.roles module
|
||||
------------------------------
|
||||
galaxy.managers.roles module
|
||||
----------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.roles
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.secured module
|
||||
--------------------------------
|
||||
galaxy.managers.secured module
|
||||
------------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.secured
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.sharable module
|
||||
---------------------------------
|
||||
galaxy.managers.sharable module
|
||||
-------------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.sharable
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.taggable module
|
||||
---------------------------------
|
||||
galaxy.managers.taggable module
|
||||
-------------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.taggable
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.tags module
|
||||
-----------------------------
|
||||
galaxy.managers.tools module
|
||||
----------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.tags
|
||||
.. automodule:: galaxy.managers.tools
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.users module
|
||||
------------------------------
|
||||
galaxy.managers.users module
|
||||
----------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.users
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.visualizations module
|
||||
---------------------------------------
|
||||
galaxy.managers.visualizations module
|
||||
-------------------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.visualizations
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.managers\.workflows module
|
||||
----------------------------------
|
||||
galaxy.managers.workflows module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.managers.workflows
|
||||
:members:
|
||||
|
||||
@@ -1,8 +1,20 @@
|
||||
galaxy\.metadata package
|
||||
========================
|
||||
galaxy.metadata package
|
||||
=======================
|
||||
|
||||
.. automodule:: galaxy.metadata
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.metadata.set\_metadata module
|
||||
------------------------------------
|
||||
|
||||
.. automodule:: galaxy.metadata.set_metadata
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
|
||||
@@ -0,0 +1,67 @@
|
||||
galaxy.model.dataset\_collections package
|
||||
=========================================
|
||||
|
||||
.. automodule:: galaxy.model.dataset_collections
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Subpackages
|
||||
-----------
|
||||
|
||||
.. toctree::
|
||||
|
||||
galaxy.model.dataset_collections.types
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.model.dataset\_collections.builder module
|
||||
------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.model.dataset_collections.builder
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.model.dataset\_collections.matching module
|
||||
-------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.model.dataset_collections.matching
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.model.dataset\_collections.registry module
|
||||
-------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.model.dataset_collections.registry
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.model.dataset\_collections.structure module
|
||||
--------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.model.dataset_collections.structure
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.model.dataset\_collections.subcollections module
|
||||
-------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.model.dataset_collections.subcollections
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.model.dataset\_collections.type\_description module
|
||||
----------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.model.dataset_collections.type_description
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -0,0 +1,28 @@
|
||||
galaxy.model.dataset\_collections.types package
|
||||
===============================================
|
||||
|
||||
.. automodule:: galaxy.model.dataset_collections.types
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.model.dataset\_collections.types.list module
|
||||
---------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.model.dataset_collections.types.list
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.model.dataset\_collections.types.paired module
|
||||
-----------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.model.dataset_collections.types.paired
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -1,16 +1,23 @@
|
||||
galaxy\.model\.migrate package
|
||||
==============================
|
||||
galaxy.model.migrate package
|
||||
============================
|
||||
|
||||
.. automodule:: galaxy.model.migrate
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Subpackages
|
||||
-----------
|
||||
|
||||
.. toctree::
|
||||
|
||||
galaxy.model.migrate.versions
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.model\.migrate\.check module
|
||||
------------------------------------
|
||||
galaxy.model.migrate.check module
|
||||
---------------------------------
|
||||
|
||||
.. automodule:: galaxy.model.migrate.check
|
||||
:members:
|
||||
|
||||
File diff suppressed because it is too large
Load Diff
@@ -1,5 +1,5 @@
|
||||
galaxy\.model\.orm package
|
||||
==========================
|
||||
galaxy.model.orm package
|
||||
========================
|
||||
|
||||
.. automodule:: galaxy.model.orm
|
||||
:members:
|
||||
@@ -9,32 +9,32 @@ galaxy\.model\.orm package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.model\.orm\.engine\_factory module
|
||||
------------------------------------------
|
||||
galaxy.model.orm.engine\_factory module
|
||||
---------------------------------------
|
||||
|
||||
.. automodule:: galaxy.model.orm.engine_factory
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.model\.orm\.logging\_connection\_proxy module
|
||||
-----------------------------------------------------
|
||||
galaxy.model.orm.logging\_connection\_proxy module
|
||||
--------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.model.orm.logging_connection_proxy
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.model\.orm\.now module
|
||||
------------------------------
|
||||
galaxy.model.orm.now module
|
||||
---------------------------
|
||||
|
||||
.. automodule:: galaxy.model.orm.now
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.model\.orm\.scripts module
|
||||
----------------------------------
|
||||
galaxy.model.orm.scripts module
|
||||
-------------------------------
|
||||
|
||||
.. automodule:: galaxy.model.orm.scripts
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.model package
|
||||
=====================
|
||||
galaxy.model package
|
||||
====================
|
||||
|
||||
.. automodule:: galaxy.model
|
||||
:members:
|
||||
@@ -11,63 +11,97 @@ Subpackages
|
||||
|
||||
.. toctree::
|
||||
|
||||
galaxy.model.dataset_collections
|
||||
galaxy.model.migrate
|
||||
galaxy.model.orm
|
||||
galaxy.model.store
|
||||
galaxy.model.tool_shed_install
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.model\.base module
|
||||
--------------------------
|
||||
galaxy.model.base module
|
||||
------------------------
|
||||
|
||||
.. automodule:: galaxy.model.base
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.model\.custom\_types module
|
||||
-----------------------------------
|
||||
galaxy.model.custom\_types module
|
||||
---------------------------------
|
||||
|
||||
.. automodule:: galaxy.model.custom_types
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.model\.item\_attrs module
|
||||
---------------------------------
|
||||
galaxy.model.database\_heartbeat module
|
||||
---------------------------------------
|
||||
|
||||
.. automodule:: galaxy.model.database_heartbeat
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.model.item\_attrs module
|
||||
-------------------------------
|
||||
|
||||
.. automodule:: galaxy.model.item_attrs
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.model\.mapping module
|
||||
-----------------------------
|
||||
galaxy.model.mapping module
|
||||
---------------------------
|
||||
|
||||
.. automodule:: galaxy.model.mapping
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.model\.metadata module
|
||||
------------------------------
|
||||
galaxy.model.metadata module
|
||||
----------------------------
|
||||
|
||||
.. automodule:: galaxy.model.metadata
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.model\.search module
|
||||
----------------------------
|
||||
galaxy.model.none\_like module
|
||||
------------------------------
|
||||
|
||||
.. automodule:: galaxy.model.none_like
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.model.search module
|
||||
--------------------------
|
||||
|
||||
.. automodule:: galaxy.model.search
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.model\.util module
|
||||
--------------------------
|
||||
galaxy.model.security module
|
||||
----------------------------
|
||||
|
||||
.. automodule:: galaxy.model.security
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.model.tags module
|
||||
------------------------
|
||||
|
||||
.. automodule:: galaxy.model.tags
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.model.util module
|
||||
------------------------
|
||||
|
||||
.. automodule:: galaxy.model.util
|
||||
:members:
|
||||
|
||||
@@ -0,0 +1,28 @@
|
||||
galaxy.model.store package
|
||||
==========================
|
||||
|
||||
.. automodule:: galaxy.model.store
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.model.store.build\_objects module
|
||||
----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.model.store.build_objects
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.model.store.discover module
|
||||
----------------------------------
|
||||
|
||||
.. automodule:: galaxy.model.store.discover
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.model\.tool\_shed\_install\.migrate package
|
||||
===================================================
|
||||
galaxy.model.tool\_shed\_install.migrate package
|
||||
================================================
|
||||
|
||||
.. automodule:: galaxy.model.tool_shed_install.migrate
|
||||
:members:
|
||||
@@ -9,8 +9,8 @@ galaxy\.model\.tool\_shed\_install\.migrate package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.model\.tool\_shed\_install\.migrate\.check module
|
||||
---------------------------------------------------------
|
||||
galaxy.model.tool\_shed\_install.migrate.check module
|
||||
-----------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.model.tool_shed_install.migrate.check
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.model\.tool\_shed\_install package
|
||||
==========================================
|
||||
galaxy.model.tool\_shed\_install package
|
||||
========================================
|
||||
|
||||
.. automodule:: galaxy.model.tool_shed_install
|
||||
:members:
|
||||
@@ -16,8 +16,8 @@ Subpackages
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.model\.tool\_shed\_install\.mapping module
|
||||
--------------------------------------------------
|
||||
galaxy.model.tool\_shed\_install.mapping module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.model.tool_shed_install.mapping
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.objectstore package
|
||||
===========================
|
||||
galaxy.objectstore package
|
||||
==========================
|
||||
|
||||
.. automodule:: galaxy.objectstore
|
||||
:members:
|
||||
@@ -9,56 +9,56 @@ galaxy\.objectstore package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.objectstore\.azure\_blob module
|
||||
---------------------------------------
|
||||
galaxy.objectstore.azure\_blob module
|
||||
-------------------------------------
|
||||
|
||||
.. automodule:: galaxy.objectstore.azure_blob
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.objectstore\.cloud module
|
||||
---------------------------------
|
||||
galaxy.objectstore.cloud module
|
||||
-------------------------------
|
||||
|
||||
.. automodule:: galaxy.objectstore.cloud
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.objectstore\.pithos module
|
||||
----------------------------------
|
||||
galaxy.objectstore.pithos module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.objectstore.pithos
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.objectstore\.pulsar module
|
||||
----------------------------------
|
||||
galaxy.objectstore.pulsar module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.objectstore.pulsar
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.objectstore\.rods module
|
||||
--------------------------------
|
||||
galaxy.objectstore.rods module
|
||||
------------------------------
|
||||
|
||||
.. automodule:: galaxy.objectstore.rods
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.objectstore\.s3 module
|
||||
------------------------------
|
||||
galaxy.objectstore.s3 module
|
||||
----------------------------
|
||||
|
||||
.. automodule:: galaxy.objectstore.s3
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.objectstore\.s3\_multipart\_upload module
|
||||
-------------------------------------------------
|
||||
galaxy.objectstore.s3\_multipart\_upload module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.objectstore.s3_multipart_upload
|
||||
:members:
|
||||
|
||||
@@ -0,0 +1,28 @@
|
||||
galaxy.openid package
|
||||
=====================
|
||||
|
||||
.. automodule:: galaxy.openid
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.openid.openid\_manager module
|
||||
------------------------------------
|
||||
|
||||
.. automodule:: galaxy.openid.openid_manager
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.openid.providers module
|
||||
------------------------------
|
||||
|
||||
.. automodule:: galaxy.openid.providers
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.quota package
|
||||
=====================
|
||||
galaxy.quota package
|
||||
====================
|
||||
|
||||
.. automodule:: galaxy.quota
|
||||
:members:
|
||||
|
||||
+17
-13
@@ -15,24 +15,28 @@ Subpackages
|
||||
galaxy.auth
|
||||
galaxy.authnz
|
||||
galaxy.containers
|
||||
galaxy.dataset_collections
|
||||
galaxy.datatypes
|
||||
galaxy.dependencies
|
||||
galaxy.eggs
|
||||
galaxy.exceptions
|
||||
galaxy.forms
|
||||
galaxy.job_execution
|
||||
galaxy.job_metrics
|
||||
galaxy.jobs
|
||||
galaxy.managers
|
||||
galaxy.metadata
|
||||
galaxy.model
|
||||
galaxy.objectstore
|
||||
galaxy.openid
|
||||
galaxy.quota
|
||||
galaxy.security
|
||||
galaxy.tool_util
|
||||
galaxy.tools
|
||||
galaxy.tours
|
||||
galaxy.util
|
||||
galaxy.visualization
|
||||
galaxy.web
|
||||
galaxy.web_stack
|
||||
galaxy.webapps
|
||||
galaxy.webhooks
|
||||
galaxy.work
|
||||
@@ -41,48 +45,48 @@ Subpackages
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.app module
|
||||
------------------
|
||||
galaxy.app module
|
||||
-----------------
|
||||
|
||||
.. automodule:: galaxy.app
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.config module
|
||||
---------------------
|
||||
galaxy.config module
|
||||
--------------------
|
||||
|
||||
.. automodule:: galaxy.config
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.main module
|
||||
-------------------
|
||||
galaxy.main module
|
||||
------------------
|
||||
|
||||
.. automodule:: galaxy.main
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.queue\_worker module
|
||||
----------------------------
|
||||
galaxy.queue\_worker module
|
||||
---------------------------
|
||||
|
||||
.. automodule:: galaxy.queue_worker
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.queues module
|
||||
---------------------
|
||||
galaxy.queues module
|
||||
--------------------
|
||||
|
||||
.. automodule:: galaxy.queues
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.version module
|
||||
----------------------
|
||||
galaxy.version module
|
||||
---------------------
|
||||
|
||||
.. automodule:: galaxy.version
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.security package
|
||||
========================
|
||||
galaxy.security package
|
||||
=======================
|
||||
|
||||
.. automodule:: galaxy.security
|
||||
:members:
|
||||
@@ -9,16 +9,24 @@ galaxy\.security package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.security\.passwords module
|
||||
----------------------------------
|
||||
galaxy.security.idencoding module
|
||||
---------------------------------
|
||||
|
||||
.. automodule:: galaxy.security.idencoding
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.security.passwords module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.security.passwords
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.security\.validate\_user\_input module
|
||||
----------------------------------------------
|
||||
galaxy.security.validate\_user\_input module
|
||||
--------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.security.validate_user_input
|
||||
:members:
|
||||
|
||||
@@ -0,0 +1,60 @@
|
||||
galaxy.tool\_util.cwl package
|
||||
=============================
|
||||
|
||||
.. automodule:: galaxy.tool_util.cwl
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.tool\_util.cwl.cwltool\_deps module
|
||||
------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.cwl.cwltool_deps
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.cwl.parser module
|
||||
-----------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.cwl.parser
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.cwl.representation module
|
||||
-------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.cwl.representation
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.cwl.runtime\_actions module
|
||||
---------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.cwl.runtime_actions
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.cwl.schema module
|
||||
-----------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.cwl.schema
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.cwl.util module
|
||||
---------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.cwl.util
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -0,0 +1,28 @@
|
||||
galaxy.tool\_util.deps.container\_resolvers package
|
||||
===================================================
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.container_resolvers
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.tool\_util.deps.container\_resolvers.explicit module
|
||||
-----------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.container_resolvers.explicit
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.container\_resolvers.mulled module
|
||||
---------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.container_resolvers.mulled
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -0,0 +1,60 @@
|
||||
galaxy.tool\_util.deps.mulled package
|
||||
=====================================
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.mulled
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.tool\_util.deps.mulled.mulled\_build module
|
||||
--------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.mulled.mulled_build
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.mulled.mulled\_build\_channel module
|
||||
-----------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.mulled.mulled_build_channel
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.mulled.mulled\_build\_files module
|
||||
---------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.mulled.mulled_build_files
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.mulled.mulled\_build\_tool module
|
||||
--------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.mulled.mulled_build_tool
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.mulled.mulled\_search module
|
||||
---------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.mulled.mulled_search
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.mulled.util module
|
||||
-----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.mulled.util
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -0,0 +1,84 @@
|
||||
galaxy.tool\_util.deps.resolvers package
|
||||
========================================
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.resolvers
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.tool\_util.deps.resolvers.brewed\_tool\_shed\_packages module
|
||||
--------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.resolvers.brewed_tool_shed_packages
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.resolvers.conda module
|
||||
---------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.resolvers.conda
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.resolvers.galaxy\_packages module
|
||||
--------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.resolvers.galaxy_packages
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.resolvers.homebrew module
|
||||
------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.resolvers.homebrew
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.resolvers.lmod module
|
||||
--------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.resolvers.lmod
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.resolvers.modules module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.resolvers.modules
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.resolvers.resolver\_mixins module
|
||||
--------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.resolvers.resolver_mixins
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.resolvers.tool\_shed\_packages module
|
||||
------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.resolvers.tool_shed_packages
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.resolvers.unlinked\_tool\_shed\_packages module
|
||||
----------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.resolvers.unlinked_tool_shed_packages
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -0,0 +1,133 @@
|
||||
galaxy.tool\_util.deps package
|
||||
==============================
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Subpackages
|
||||
-----------
|
||||
|
||||
.. toctree::
|
||||
|
||||
galaxy.tool_util.deps.container_resolvers
|
||||
galaxy.tool_util.deps.mulled
|
||||
galaxy.tool_util.deps.resolvers
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.tool\_util.deps.brew\_exts module
|
||||
----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.brew_exts
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.brew\_util module
|
||||
----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.brew_util
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.commands module
|
||||
--------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.commands
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.conda\_compat module
|
||||
-------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.conda_compat
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.conda\_util module
|
||||
-----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.conda_util
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.container\_classes module
|
||||
------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.container_classes
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.containers module
|
||||
----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.containers
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.dependencies module
|
||||
------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.dependencies
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.docker\_util module
|
||||
------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.docker_util
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.dockerfiles module
|
||||
-----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.dockerfiles
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.installable module
|
||||
-----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.installable
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.requirements module
|
||||
------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.requirements
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.singularity\_util module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.singularity_util
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.deps.views module
|
||||
-----------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.deps.views
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -0,0 +1,36 @@
|
||||
galaxy.tool\_util.locations package
|
||||
===================================
|
||||
|
||||
.. automodule:: galaxy.tool_util.locations
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.tool\_util.locations.dockstore module
|
||||
--------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.locations.dockstore
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.locations.file module
|
||||
---------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.locations.file
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.locations.http module
|
||||
---------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.locations.http
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -0,0 +1,92 @@
|
||||
galaxy.tool\_util.parser package
|
||||
================================
|
||||
|
||||
.. automodule:: galaxy.tool_util.parser
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.tool\_util.parser.cwl module
|
||||
-----------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.parser.cwl
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.parser.error\_level module
|
||||
--------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.parser.error_level
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.parser.factory module
|
||||
---------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.parser.factory
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.parser.interface module
|
||||
-----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.parser.interface
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.parser.output\_actions module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.parser.output_actions
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.parser.output\_collection\_def module
|
||||
-------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.parser.output_collection_def
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.parser.output\_objects module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.parser.output_objects
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.parser.util module
|
||||
------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.parser.util
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.parser.xml module
|
||||
-----------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.parser.xml
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.parser.yaml module
|
||||
------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.parser.yaml
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -0,0 +1,54 @@
|
||||
galaxy.tool\_util package
|
||||
=========================
|
||||
|
||||
.. automodule:: galaxy.tool_util
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Subpackages
|
||||
-----------
|
||||
|
||||
.. toctree::
|
||||
|
||||
galaxy.tool_util.cwl
|
||||
galaxy.tool_util.deps
|
||||
galaxy.tool_util.locations
|
||||
galaxy.tool_util.parser
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.tool\_util.fetcher module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.fetcher
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.loader module
|
||||
-------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.loader
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.output\_checker module
|
||||
----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.output_checker
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.provided\_metadata module
|
||||
-------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.provided_metadata
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.tools\.actions package
|
||||
==============================
|
||||
galaxy.tools.actions package
|
||||
============================
|
||||
|
||||
.. automodule:: galaxy.tools.actions
|
||||
:members:
|
||||
@@ -9,56 +9,56 @@ galaxy\.tools\.actions package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.tools\.actions\.data\_manager module
|
||||
--------------------------------------------
|
||||
galaxy.tools.actions.data\_manager module
|
||||
-----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.actions.data_manager
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.actions\.data\_source module
|
||||
-------------------------------------------
|
||||
galaxy.tools.actions.data\_source module
|
||||
----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.actions.data_source
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.actions\.history\_imp\_exp module
|
||||
------------------------------------------------
|
||||
galaxy.tools.actions.history\_imp\_exp module
|
||||
---------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.actions.history_imp_exp
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.actions\.metadata module
|
||||
---------------------------------------
|
||||
galaxy.tools.actions.metadata module
|
||||
------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.actions.metadata
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.actions\.model\_operations module
|
||||
------------------------------------------------
|
||||
galaxy.tools.actions.model\_operations module
|
||||
---------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.actions.model_operations
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.actions\.upload module
|
||||
-------------------------------------
|
||||
galaxy.tools.actions.upload module
|
||||
----------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.actions.upload
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.actions\.upload\_common module
|
||||
---------------------------------------------
|
||||
galaxy.tools.actions.upload\_common module
|
||||
------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.actions.upload_common
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.tools\.data package
|
||||
===========================
|
||||
galaxy.tools.data package
|
||||
=========================
|
||||
|
||||
.. automodule:: galaxy.tools.data
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.tools\.data\_manager package
|
||||
====================================
|
||||
galaxy.tools.data\_manager package
|
||||
==================================
|
||||
|
||||
.. automodule:: galaxy.tools.data_manager
|
||||
:members:
|
||||
@@ -9,8 +9,8 @@ galaxy\.tools\.data\_manager package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.tools\.data\_manager\.manager module
|
||||
--------------------------------------------
|
||||
galaxy.tools.data\_manager.manager module
|
||||
-----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.data_manager.manager
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.tools\.error\_reports\.plugins package
|
||||
==============================================
|
||||
galaxy.tools.error\_reports.plugins package
|
||||
===========================================
|
||||
|
||||
.. automodule:: galaxy.tools.error_reports.plugins
|
||||
:members:
|
||||
@@ -9,48 +9,56 @@ galaxy\.tools\.error\_reports\.plugins package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.tools\.error\_reports\.plugins\.biostars module
|
||||
-------------------------------------------------------
|
||||
galaxy.tools.error\_reports.plugins.base\_git module
|
||||
----------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.error_reports.plugins.biostars
|
||||
.. automodule:: galaxy.tools.error_reports.plugins.base_git
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.error\_reports\.plugins\.email module
|
||||
----------------------------------------------------
|
||||
galaxy.tools.error\_reports.plugins.email module
|
||||
------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.error_reports.plugins.email
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.error\_reports\.plugins\.github module
|
||||
-----------------------------------------------------
|
||||
galaxy.tools.error\_reports.plugins.github module
|
||||
-------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.error_reports.plugins.github
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.error\_reports\.plugins\.influxdb module
|
||||
-------------------------------------------------------
|
||||
galaxy.tools.error\_reports.plugins.gitlab module
|
||||
-------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.error_reports.plugins.gitlab
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tools.error\_reports.plugins.influxdb module
|
||||
---------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.error_reports.plugins.influxdb
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.error\_reports\.plugins\.json module
|
||||
---------------------------------------------------
|
||||
galaxy.tools.error\_reports.plugins.json module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.error_reports.plugins.json
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.error\_reports\.plugins\.sentry module
|
||||
-----------------------------------------------------
|
||||
galaxy.tools.error\_reports.plugins.sentry module
|
||||
-------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.error_reports.plugins.sentry
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.tools\.error\_reports package
|
||||
=====================================
|
||||
galaxy.tools.error\_reports package
|
||||
===================================
|
||||
|
||||
.. automodule:: galaxy.tools.error_reports
|
||||
:members:
|
||||
|
||||
@@ -0,0 +1,36 @@
|
||||
galaxy.tools.expressions package
|
||||
================================
|
||||
|
||||
.. automodule:: galaxy.tools.expressions
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.tools.expressions.evaluation module
|
||||
------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.expressions.evaluation
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tools.expressions.script module
|
||||
--------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.expressions.script
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tools.expressions.util module
|
||||
------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.expressions.util
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.tools\.filters package
|
||||
==============================
|
||||
galaxy.tools.filters package
|
||||
============================
|
||||
|
||||
.. automodule:: galaxy.tools.filters
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.tools\.imp\_exp package
|
||||
===============================
|
||||
galaxy.tools.imp\_exp package
|
||||
=============================
|
||||
|
||||
.. automodule:: galaxy.tools.imp_exp
|
||||
:members:
|
||||
@@ -9,16 +9,16 @@ galaxy\.tools\.imp\_exp package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.tools\.imp\_exp\.export\_history module
|
||||
-----------------------------------------------
|
||||
galaxy.tools.imp\_exp.export\_history module
|
||||
--------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.imp_exp.export_history
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.imp\_exp\.unpack\_tar\_gz\_archive module
|
||||
--------------------------------------------------------
|
||||
galaxy.tools.imp\_exp.unpack\_tar\_gz\_archive module
|
||||
-----------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.imp_exp.unpack_tar_gz_archive
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.tools\.linters package
|
||||
==============================
|
||||
galaxy.tools.linters package
|
||||
============================
|
||||
|
||||
.. automodule:: galaxy.tools.linters
|
||||
:members:
|
||||
@@ -9,72 +9,80 @@ galaxy\.tools\.linters package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.tools\.linters\.citations module
|
||||
----------------------------------------
|
||||
galaxy.tools.linters.citations module
|
||||
-------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.linters.citations
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.linters\.command module
|
||||
--------------------------------------
|
||||
galaxy.tools.linters.command module
|
||||
-----------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.linters.command
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.linters\.general module
|
||||
--------------------------------------
|
||||
galaxy.tools.linters.cwl module
|
||||
-------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.linters.cwl
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tools.linters.general module
|
||||
-----------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.linters.general
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.linters\.help module
|
||||
-----------------------------------
|
||||
galaxy.tools.linters.help module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.linters.help
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.linters\.inputs module
|
||||
-------------------------------------
|
||||
galaxy.tools.linters.inputs module
|
||||
----------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.linters.inputs
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.linters\.outputs module
|
||||
--------------------------------------
|
||||
galaxy.tools.linters.outputs module
|
||||
-----------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.linters.outputs
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.linters\.stdio module
|
||||
------------------------------------
|
||||
galaxy.tools.linters.stdio module
|
||||
---------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.linters.stdio
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.linters\.tests module
|
||||
------------------------------------
|
||||
galaxy.tools.linters.tests module
|
||||
---------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.linters.tests
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.linters\.xml\_order module
|
||||
-----------------------------------------
|
||||
galaxy.tools.linters.xml\_order module
|
||||
--------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.linters.xml_order
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.tools\.parameters package
|
||||
=================================
|
||||
galaxy.tools.parameters package
|
||||
===============================
|
||||
|
||||
.. automodule:: galaxy.tools.parameters
|
||||
:members:
|
||||
@@ -9,96 +9,88 @@ galaxy\.tools\.parameters package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.tools\.parameters\.basic module
|
||||
---------------------------------------
|
||||
galaxy.tools.parameters.basic module
|
||||
------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.parameters.basic
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.parameters\.dataset\_matcher module
|
||||
--------------------------------------------------
|
||||
galaxy.tools.parameters.dataset\_matcher module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.parameters.dataset_matcher
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.parameters\.dynamic\_options module
|
||||
--------------------------------------------------
|
||||
galaxy.tools.parameters.dynamic\_options module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.parameters.dynamic_options
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.parameters\.grouping module
|
||||
------------------------------------------
|
||||
galaxy.tools.parameters.grouping module
|
||||
---------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.parameters.grouping
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.parameters\.history\_query module
|
||||
------------------------------------------------
|
||||
galaxy.tools.parameters.history\_query module
|
||||
---------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.parameters.history_query
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.parameters\.input\_translation module
|
||||
----------------------------------------------------
|
||||
galaxy.tools.parameters.input\_translation module
|
||||
-------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.parameters.input_translation
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.parameters\.meta module
|
||||
--------------------------------------
|
||||
galaxy.tools.parameters.meta module
|
||||
-----------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.parameters.meta
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.parameters\.output\_collect module
|
||||
-------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.parameters.output_collect
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.parameters\.sanitize module
|
||||
------------------------------------------
|
||||
galaxy.tools.parameters.sanitize module
|
||||
---------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.parameters.sanitize
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.parameters\.validation module
|
||||
--------------------------------------------
|
||||
galaxy.tools.parameters.validation module
|
||||
-----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.parameters.validation
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.parameters\.wrapped module
|
||||
-----------------------------------------
|
||||
galaxy.tools.parameters.wrapped module
|
||||
--------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.parameters.wrapped
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.parameters\.wrapped\_json module
|
||||
-----------------------------------------------
|
||||
galaxy.tools.parameters.wrapped\_json module
|
||||
--------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.parameters.wrapped_json
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.tools package
|
||||
=====================
|
||||
galaxy.tools package
|
||||
====================
|
||||
|
||||
.. automodule:: galaxy.tools
|
||||
:members:
|
||||
@@ -12,17 +12,14 @@ Subpackages
|
||||
.. toctree::
|
||||
|
||||
galaxy.tools.actions
|
||||
galaxy.tools.cwl
|
||||
galaxy.tools.data
|
||||
galaxy.tools.data_manager
|
||||
galaxy.tools.deps
|
||||
galaxy.tools.error_reports
|
||||
galaxy.tools.expressions
|
||||
galaxy.tools.filters
|
||||
galaxy.tools.imp_exp
|
||||
galaxy.tools.linters
|
||||
galaxy.tools.locations
|
||||
galaxy.tools.parameters
|
||||
galaxy.tools.parser
|
||||
galaxy.tools.search
|
||||
galaxy.tools.toolbox
|
||||
galaxy.tools.util
|
||||
@@ -31,128 +28,104 @@ Subpackages
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.tools\.cache module
|
||||
---------------------------
|
||||
galaxy.tools.cache module
|
||||
-------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.cache
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.data\_fetch module
|
||||
---------------------------------
|
||||
galaxy.tools.data\_fetch module
|
||||
-------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.data_fetch
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.errors module
|
||||
----------------------------
|
||||
galaxy.tools.errors module
|
||||
--------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.errors
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.evaluation module
|
||||
--------------------------------
|
||||
galaxy.tools.evaluation module
|
||||
------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.evaluation
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.exception\_handling module
|
||||
-----------------------------------------
|
||||
galaxy.tools.exception\_handling module
|
||||
---------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.exception_handling
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.execute module
|
||||
-----------------------------
|
||||
galaxy.tools.execute module
|
||||
---------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.execute
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.fetcher module
|
||||
-----------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.fetcher
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.lint module
|
||||
--------------------------
|
||||
galaxy.tools.lint module
|
||||
------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.lint
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.lint\_util module
|
||||
--------------------------------
|
||||
galaxy.tools.lint\_util module
|
||||
------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.lint_util
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.loader module
|
||||
----------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.loader
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.loader\_directory module
|
||||
---------------------------------------
|
||||
galaxy.tools.loader\_directory module
|
||||
-------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.loader_directory
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.provided\_metadata module
|
||||
----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.provided_metadata
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.repositories module
|
||||
----------------------------------
|
||||
galaxy.tools.repositories module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.repositories
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.special\_tools module
|
||||
------------------------------------
|
||||
galaxy.tools.special\_tools module
|
||||
----------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.special_tools
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.test module
|
||||
--------------------------
|
||||
galaxy.tools.test module
|
||||
------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.test
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.wrappers module
|
||||
------------------------------
|
||||
galaxy.tools.wrappers module
|
||||
----------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.wrappers
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.tools\.search package
|
||||
=============================
|
||||
galaxy.tools.search package
|
||||
===========================
|
||||
|
||||
.. automodule:: galaxy.tools.search
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.tools\.toolbox\.filters package
|
||||
=======================================
|
||||
galaxy.tools.toolbox.filters package
|
||||
====================================
|
||||
|
||||
.. automodule:: galaxy.tools.toolbox.filters
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.tools\.toolbox\.lineages package
|
||||
========================================
|
||||
galaxy.tools.toolbox.lineages package
|
||||
=====================================
|
||||
|
||||
.. automodule:: galaxy.tools.toolbox.lineages
|
||||
:members:
|
||||
@@ -9,16 +9,16 @@ galaxy\.tools\.toolbox\.lineages package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.tools\.toolbox\.lineages\.factory module
|
||||
------------------------------------------------
|
||||
galaxy.tools.toolbox.lineages.factory module
|
||||
--------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.toolbox.lineages.factory
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.toolbox\.lineages\.interface module
|
||||
--------------------------------------------------
|
||||
galaxy.tools.toolbox.lineages.interface module
|
||||
----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.toolbox.lineages.interface
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.tools\.toolbox package
|
||||
==============================
|
||||
galaxy.tools.toolbox package
|
||||
============================
|
||||
|
||||
.. automodule:: galaxy.tools.toolbox
|
||||
:members:
|
||||
@@ -17,48 +17,48 @@ Subpackages
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.tools\.toolbox\.base module
|
||||
-----------------------------------
|
||||
galaxy.tools.toolbox.base module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.toolbox.base
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.toolbox\.integrated\_panel module
|
||||
------------------------------------------------
|
||||
galaxy.tools.toolbox.integrated\_panel module
|
||||
---------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.toolbox.integrated_panel
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.toolbox\.panel module
|
||||
------------------------------------
|
||||
galaxy.tools.toolbox.panel module
|
||||
---------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.toolbox.panel
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.toolbox\.parser module
|
||||
-------------------------------------
|
||||
galaxy.tools.toolbox.parser module
|
||||
----------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.toolbox.parser
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.toolbox\.tags module
|
||||
-----------------------------------
|
||||
galaxy.tools.toolbox.tags module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.toolbox.tags
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.toolbox\.watcher module
|
||||
--------------------------------------
|
||||
galaxy.tools.toolbox.watcher module
|
||||
-----------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.toolbox.watcher
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.tools\.util\.galaxyops package
|
||||
======================================
|
||||
galaxy.tools.util.galaxyops package
|
||||
===================================
|
||||
|
||||
.. automodule:: galaxy.tools.util.galaxyops
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.tools\.util package
|
||||
===========================
|
||||
galaxy.tools.util package
|
||||
=========================
|
||||
|
||||
.. automodule:: galaxy.tools.util
|
||||
:members:
|
||||
@@ -16,8 +16,8 @@ Subpackages
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.tools\.util\.maf\_utilities module
|
||||
------------------------------------------
|
||||
galaxy.tools.util.maf\_utilities module
|
||||
---------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.util.maf_utilities
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.tools\.verify\.asserts package
|
||||
======================================
|
||||
galaxy.tools.verify.asserts package
|
||||
===================================
|
||||
|
||||
.. automodule:: galaxy.tools.verify.asserts
|
||||
:members:
|
||||
@@ -9,32 +9,40 @@ galaxy\.tools\.verify\.asserts package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.tools\.verify\.asserts\.hdf5 module
|
||||
-------------------------------------------
|
||||
galaxy.tools.verify.asserts.archive module
|
||||
------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.verify.asserts.archive
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tools.verify.asserts.hdf5 module
|
||||
---------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.verify.asserts.hdf5
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.verify\.asserts\.tabular module
|
||||
----------------------------------------------
|
||||
galaxy.tools.verify.asserts.tabular module
|
||||
------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.verify.asserts.tabular
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.verify\.asserts\.text module
|
||||
-------------------------------------------
|
||||
galaxy.tools.verify.asserts.text module
|
||||
---------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.verify.asserts.text
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.verify\.asserts\.xml module
|
||||
------------------------------------------
|
||||
galaxy.tools.verify.asserts.xml module
|
||||
--------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.verify.asserts.xml
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.tools\.verify package
|
||||
=============================
|
||||
galaxy.tools.verify package
|
||||
===========================
|
||||
|
||||
.. automodule:: galaxy.tools.verify
|
||||
:members:
|
||||
@@ -16,24 +16,24 @@ Subpackages
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.tools\.verify\.interactor module
|
||||
----------------------------------------
|
||||
galaxy.tools.verify.interactor module
|
||||
-------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.verify.interactor
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.verify\.script module
|
||||
------------------------------------
|
||||
galaxy.tools.verify.script module
|
||||
---------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.verify.script
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.tools\.verify\.test\_data module
|
||||
----------------------------------------
|
||||
galaxy.tools.verify.test\_data module
|
||||
-------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.verify.test_data
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.tours package
|
||||
=====================
|
||||
galaxy.tours package
|
||||
====================
|
||||
|
||||
.. automodule:: galaxy.tours
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.util\.logging package
|
||||
=============================
|
||||
galaxy.util.logging package
|
||||
===========================
|
||||
|
||||
.. automodule:: galaxy.util.logging
|
||||
:members:
|
||||
@@ -9,8 +9,8 @@ galaxy\.util\.logging package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.util\.logging\.fluent\_log module
|
||||
-----------------------------------------
|
||||
galaxy.util.logging.fluent\_log module
|
||||
--------------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.logging.fluent_log
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.util\.pastescript package
|
||||
=================================
|
||||
galaxy.util.pastescript package
|
||||
===============================
|
||||
|
||||
.. automodule:: galaxy.util.pastescript
|
||||
:members:
|
||||
@@ -9,16 +9,16 @@ galaxy\.util\.pastescript package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.util\.pastescript\.loadwsgi module
|
||||
------------------------------------------
|
||||
galaxy.util.pastescript.loadwsgi module
|
||||
---------------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.pastescript.loadwsgi
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.pastescript\.serve module
|
||||
---------------------------------------
|
||||
galaxy.util.pastescript.serve module
|
||||
------------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.pastescript.serve
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.util\.path package
|
||||
==========================
|
||||
galaxy.util.path package
|
||||
========================
|
||||
|
||||
.. automodule:: galaxy.util.path
|
||||
:members:
|
||||
@@ -9,16 +9,16 @@ galaxy\.util\.path package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.util\.path\.ntpath module
|
||||
---------------------------------
|
||||
galaxy.util.path.ntpath module
|
||||
------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.path.ntpath
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.path\.posixpath module
|
||||
------------------------------------
|
||||
galaxy.util.path.posixpath module
|
||||
---------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.path.posixpath
|
||||
:members:
|
||||
|
||||
+116
-108
@@ -1,5 +1,5 @@
|
||||
galaxy\.util package
|
||||
====================
|
||||
galaxy.util package
|
||||
===================
|
||||
|
||||
.. automodule:: galaxy.util
|
||||
:members:
|
||||
@@ -18,352 +18,360 @@ Subpackages
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.util\.aliaspickler module
|
||||
---------------------------------
|
||||
galaxy.util.aliaspickler module
|
||||
-------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.aliaspickler
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.biostar module
|
||||
----------------------------
|
||||
|
||||
.. automodule:: galaxy.util.biostar
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.bunch module
|
||||
--------------------------
|
||||
galaxy.util.bunch module
|
||||
------------------------
|
||||
|
||||
.. automodule:: galaxy.util.bunch
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.checkers module
|
||||
-----------------------------
|
||||
galaxy.util.bytesize module
|
||||
---------------------------
|
||||
|
||||
.. automodule:: galaxy.util.bytesize
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.util.checkers module
|
||||
---------------------------
|
||||
|
||||
.. automodule:: galaxy.util.checkers
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.compression\_utils module
|
||||
---------------------------------------
|
||||
galaxy.util.compression\_utils module
|
||||
-------------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.compression_utils
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.create\_history\_template module
|
||||
----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.create_history_template
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.dbkeys module
|
||||
---------------------------
|
||||
galaxy.util.dbkeys module
|
||||
-------------------------
|
||||
|
||||
.. automodule:: galaxy.util.dbkeys
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.dictifiable module
|
||||
--------------------------------
|
||||
galaxy.util.dictifiable module
|
||||
------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.dictifiable
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.expressions module
|
||||
--------------------------------
|
||||
galaxy.util.expressions module
|
||||
------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.expressions
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.facts module
|
||||
--------------------------
|
||||
galaxy.util.facts module
|
||||
------------------------
|
||||
|
||||
.. automodule:: galaxy.util.facts
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.filelock module
|
||||
-----------------------------
|
||||
galaxy.util.filelock module
|
||||
---------------------------
|
||||
|
||||
.. automodule:: galaxy.util.filelock
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.hash\_util module
|
||||
-------------------------------
|
||||
galaxy.util.form\_builder module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.form_builder
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.util.getargspec module
|
||||
-----------------------------
|
||||
|
||||
.. automodule:: galaxy.util.getargspec
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.util.hash\_util module
|
||||
-----------------------------
|
||||
|
||||
.. automodule:: galaxy.util.hash_util
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.heartbeat module
|
||||
------------------------------
|
||||
galaxy.util.heartbeat module
|
||||
----------------------------
|
||||
|
||||
.. automodule:: galaxy.util.heartbeat
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.image\_util module
|
||||
--------------------------------
|
||||
galaxy.util.image\_util module
|
||||
------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.image_util
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.inflection module
|
||||
-------------------------------
|
||||
galaxy.util.inflection module
|
||||
-----------------------------
|
||||
|
||||
.. automodule:: galaxy.util.inflection
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.json module
|
||||
-------------------------
|
||||
galaxy.util.json module
|
||||
-----------------------
|
||||
|
||||
.. automodule:: galaxy.util.json
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.jstree module
|
||||
---------------------------
|
||||
galaxy.util.jstree module
|
||||
-------------------------
|
||||
|
||||
.. automodule:: galaxy.util.jstree
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.lazy\_process module
|
||||
----------------------------------
|
||||
galaxy.util.lazy\_process module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.lazy_process
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.monitors module
|
||||
-----------------------------
|
||||
galaxy.util.monitors module
|
||||
---------------------------
|
||||
|
||||
.. automodule:: galaxy.util.monitors
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.none\_like module
|
||||
-------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.none_like
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.object\_wrapper module
|
||||
------------------------------------
|
||||
galaxy.util.object\_wrapper module
|
||||
----------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.object_wrapper
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.odict module
|
||||
--------------------------
|
||||
galaxy.util.odict module
|
||||
------------------------
|
||||
|
||||
.. automodule:: galaxy.util.odict
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.oset module
|
||||
-------------------------
|
||||
galaxy.util.oset module
|
||||
-----------------------
|
||||
|
||||
.. automodule:: galaxy.util.oset
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.permutations module
|
||||
---------------------------------
|
||||
galaxy.util.permutations module
|
||||
-------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.permutations
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.plugin\_config module
|
||||
-----------------------------------
|
||||
galaxy.util.plugin\_config module
|
||||
---------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.plugin_config
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.properties module
|
||||
-------------------------------
|
||||
galaxy.util.properties module
|
||||
-----------------------------
|
||||
|
||||
.. automodule:: galaxy.util.properties
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.renamed\_temporary\_file module
|
||||
---------------------------------------------
|
||||
galaxy.util.renamed\_temporary\_file module
|
||||
-------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.renamed_temporary_file
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.rules\_dsl module
|
||||
-------------------------------
|
||||
galaxy.util.rules\_dsl module
|
||||
-----------------------------
|
||||
|
||||
.. automodule:: galaxy.util.rules_dsl
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.sanitize\_html module
|
||||
-----------------------------------
|
||||
galaxy.util.sanitize\_html module
|
||||
---------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.sanitize_html
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.script module
|
||||
---------------------------
|
||||
galaxy.util.script module
|
||||
-------------------------
|
||||
|
||||
.. automodule:: galaxy.util.script
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.simplegraph module
|
||||
--------------------------------
|
||||
galaxy.util.simplegraph module
|
||||
------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.simplegraph
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.sleeper module
|
||||
----------------------------
|
||||
galaxy.util.sleeper module
|
||||
--------------------------
|
||||
|
||||
.. automodule:: galaxy.util.sleeper
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.sockets module
|
||||
----------------------------
|
||||
galaxy.util.sockets module
|
||||
--------------------------
|
||||
|
||||
.. automodule:: galaxy.util.sockets
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.specs module
|
||||
--------------------------
|
||||
galaxy.util.specs module
|
||||
------------------------
|
||||
|
||||
.. automodule:: galaxy.util.specs
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.sqlite module
|
||||
---------------------------
|
||||
galaxy.util.sqlite module
|
||||
-------------------------
|
||||
|
||||
.. automodule:: galaxy.util.sqlite
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.streamball module
|
||||
-------------------------------
|
||||
galaxy.util.streamball module
|
||||
-----------------------------
|
||||
|
||||
.. automodule:: galaxy.util.streamball
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.submodules module
|
||||
-------------------------------
|
||||
galaxy.util.submodules module
|
||||
-----------------------------
|
||||
|
||||
.. automodule:: galaxy.util.submodules
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.template module
|
||||
-----------------------------
|
||||
galaxy.util.template module
|
||||
---------------------------
|
||||
|
||||
.. automodule:: galaxy.util.template
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.tool\_version module
|
||||
----------------------------------
|
||||
galaxy.util.tool\_version module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.tool_version
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.topsort module
|
||||
----------------------------
|
||||
galaxy.util.topsort module
|
||||
--------------------------
|
||||
|
||||
.. automodule:: galaxy.util.topsort
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.ucsc module
|
||||
-------------------------
|
||||
galaxy.util.ucsc module
|
||||
-----------------------
|
||||
|
||||
.. automodule:: galaxy.util.ucsc
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.validation module
|
||||
-------------------------------
|
||||
galaxy.util.validation module
|
||||
-----------------------------
|
||||
|
||||
.. automodule:: galaxy.util.validation
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.watcher module
|
||||
----------------------------
|
||||
galaxy.util.watcher module
|
||||
--------------------------
|
||||
|
||||
.. automodule:: galaxy.util.watcher
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.util\.xml\_macros module
|
||||
--------------------------------
|
||||
galaxy.util.web\_compat module
|
||||
------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.web_compat
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.util.xml\_macros module
|
||||
------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.xml_macros
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.visualization\.data\_providers\.phyloviz package
|
||||
========================================================
|
||||
galaxy.visualization.data\_providers.phyloviz package
|
||||
=====================================================
|
||||
|
||||
.. automodule:: galaxy.visualization.data_providers.phyloviz
|
||||
:members:
|
||||
@@ -9,32 +9,32 @@ galaxy\.visualization\.data\_providers\.phyloviz package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.visualization\.data\_providers\.phyloviz\.baseparser module
|
||||
-------------------------------------------------------------------
|
||||
galaxy.visualization.data\_providers.phyloviz.baseparser module
|
||||
---------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.visualization.data_providers.phyloviz.baseparser
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.visualization\.data\_providers\.phyloviz\.newickparser module
|
||||
---------------------------------------------------------------------
|
||||
galaxy.visualization.data\_providers.phyloviz.newickparser module
|
||||
-----------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.visualization.data_providers.phyloviz.newickparser
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.visualization\.data\_providers\.phyloviz\.nexusparser module
|
||||
--------------------------------------------------------------------
|
||||
galaxy.visualization.data\_providers.phyloviz.nexusparser module
|
||||
----------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.visualization.data_providers.phyloviz.nexusparser
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.visualization\.data\_providers\.phyloviz\.phyloxmlparser module
|
||||
-----------------------------------------------------------------------
|
||||
galaxy.visualization.data\_providers.phyloviz.phyloxmlparser module
|
||||
-------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.visualization.data_providers.phyloviz.phyloxmlparser
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.visualization\.data\_providers package
|
||||
==============================================
|
||||
galaxy.visualization.data\_providers package
|
||||
============================================
|
||||
|
||||
.. automodule:: galaxy.visualization.data_providers
|
||||
:members:
|
||||
@@ -16,32 +16,32 @@ Subpackages
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.visualization\.data\_providers\.basic module
|
||||
----------------------------------------------------
|
||||
galaxy.visualization.data\_providers.basic module
|
||||
-------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.visualization.data_providers.basic
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.visualization\.data\_providers\.cigar module
|
||||
----------------------------------------------------
|
||||
galaxy.visualization.data\_providers.cigar module
|
||||
-------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.visualization.data_providers.cigar
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.visualization\.data\_providers\.genome module
|
||||
-----------------------------------------------------
|
||||
galaxy.visualization.data\_providers.genome module
|
||||
--------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.visualization.data_providers.genome
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.visualization\.data\_providers\.registry module
|
||||
-------------------------------------------------------
|
||||
galaxy.visualization.data\_providers.registry module
|
||||
----------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.visualization.data_providers.registry
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.visualization\.genome package
|
||||
=====================================
|
||||
galaxy.visualization.genome package
|
||||
===================================
|
||||
|
||||
.. automodule:: galaxy.visualization.genome
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.visualization\.plugins package
|
||||
======================================
|
||||
galaxy.visualization.plugins package
|
||||
====================================
|
||||
|
||||
.. automodule:: galaxy.visualization.plugins
|
||||
:members:
|
||||
@@ -9,48 +9,48 @@ galaxy\.visualization\.plugins package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.visualization\.plugins\.config\_parser module
|
||||
-----------------------------------------------------
|
||||
galaxy.visualization.plugins.config\_parser module
|
||||
--------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.visualization.plugins.config_parser
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.visualization\.plugins\.interactive\_environments module
|
||||
----------------------------------------------------------------
|
||||
galaxy.visualization.plugins.interactive\_environments module
|
||||
-------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.visualization.plugins.interactive_environments
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.visualization\.plugins\.plugin module
|
||||
---------------------------------------------
|
||||
galaxy.visualization.plugins.plugin module
|
||||
------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.visualization.plugins.plugin
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.visualization\.plugins\.registry module
|
||||
-----------------------------------------------
|
||||
galaxy.visualization.plugins.registry module
|
||||
--------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.visualization.plugins.registry
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.visualization\.plugins\.resource\_parser module
|
||||
-------------------------------------------------------
|
||||
galaxy.visualization.plugins.resource\_parser module
|
||||
----------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.visualization.plugins.resource_parser
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.visualization\.plugins\.utils module
|
||||
--------------------------------------------
|
||||
galaxy.visualization.plugins.utils module
|
||||
-----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.visualization.plugins.utils
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.visualization package
|
||||
=============================
|
||||
galaxy.visualization package
|
||||
============================
|
||||
|
||||
.. automodule:: galaxy.visualization
|
||||
:members:
|
||||
@@ -19,8 +19,8 @@ Subpackages
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.visualization\.genomes module
|
||||
-------------------------------------
|
||||
galaxy.visualization.genomes module
|
||||
-----------------------------------
|
||||
|
||||
.. automodule:: galaxy.visualization.genomes
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.visualization\.tracks package
|
||||
=====================================
|
||||
galaxy.visualization.tracks package
|
||||
===================================
|
||||
|
||||
.. automodule:: galaxy.visualization.tracks
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.web\.base package
|
||||
=========================
|
||||
galaxy.web.base package
|
||||
=======================
|
||||
|
||||
.. automodule:: galaxy.web.base
|
||||
:members:
|
||||
@@ -9,8 +9,8 @@ galaxy\.web\.base package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.web\.base\.controller module
|
||||
------------------------------------
|
||||
galaxy.web.base.controller module
|
||||
---------------------------------
|
||||
|
||||
.. automodule:: galaxy.web.base.controller
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.web\.framework\.helpers package
|
||||
=======================================
|
||||
galaxy.web.framework.helpers package
|
||||
====================================
|
||||
|
||||
.. automodule:: galaxy.web.framework.helpers
|
||||
:members:
|
||||
@@ -9,16 +9,16 @@ galaxy\.web\.framework\.helpers package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.web\.framework\.helpers\.grids module
|
||||
---------------------------------------------
|
||||
galaxy.web.framework.helpers.grids module
|
||||
-----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.web.framework.helpers.grids
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.web\.framework\.helpers\.tags module
|
||||
--------------------------------------------
|
||||
galaxy.web.framework.helpers.tags module
|
||||
----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.web.framework.helpers.tags
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.web\.framework\.middleware package
|
||||
==========================================
|
||||
galaxy.web.framework.middleware package
|
||||
=======================================
|
||||
|
||||
.. automodule:: galaxy.web.framework.middleware
|
||||
:members:
|
||||
@@ -9,88 +9,88 @@ galaxy\.web\.framework\.middleware package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.web\.framework\.middleware\.batch module
|
||||
------------------------------------------------
|
||||
galaxy.web.framework.middleware.batch module
|
||||
--------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.web.framework.middleware.batch
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.web\.framework\.middleware\.error module
|
||||
------------------------------------------------
|
||||
galaxy.web.framework.middleware.error module
|
||||
--------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.web.framework.middleware.error
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.web\.framework\.middleware\.profile module
|
||||
--------------------------------------------------
|
||||
galaxy.web.framework.middleware.profile module
|
||||
----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.web.framework.middleware.profile
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.web\.framework\.middleware\.remoteuser module
|
||||
-----------------------------------------------------
|
||||
galaxy.web.framework.middleware.remoteuser module
|
||||
-------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.web.framework.middleware.remoteuser
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.web\.framework\.middleware\.request\_id module
|
||||
------------------------------------------------------
|
||||
galaxy.web.framework.middleware.request\_id module
|
||||
--------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.web.framework.middleware.request_id
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.web\.framework\.middleware\.sentry module
|
||||
-------------------------------------------------
|
||||
galaxy.web.framework.middleware.sentry module
|
||||
---------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.web.framework.middleware.sentry
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.web\.framework\.middleware\.sqldebug module
|
||||
---------------------------------------------------
|
||||
galaxy.web.framework.middleware.sqldebug module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.web.framework.middleware.sqldebug
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.web\.framework\.middleware\.static module
|
||||
-------------------------------------------------
|
||||
galaxy.web.framework.middleware.static module
|
||||
---------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.web.framework.middleware.static
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.web\.framework\.middleware\.statsd module
|
||||
-------------------------------------------------
|
||||
galaxy.web.framework.middleware.statsd module
|
||||
---------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.web.framework.middleware.statsd
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.web\.framework\.middleware\.translogger module
|
||||
------------------------------------------------------
|
||||
galaxy.web.framework.middleware.translogger module
|
||||
--------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.web.framework.middleware.translogger
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.web\.framework\.middleware\.xforwardedhost module
|
||||
---------------------------------------------------------
|
||||
galaxy.web.framework.middleware.xforwardedhost module
|
||||
-----------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.web.framework.middleware.xforwardedhost
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.web\.framework package
|
||||
==============================
|
||||
galaxy.web.framework package
|
||||
============================
|
||||
|
||||
.. automodule:: galaxy.web.framework
|
||||
:members:
|
||||
@@ -17,24 +17,24 @@ Subpackages
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.web\.framework\.base module
|
||||
-----------------------------------
|
||||
galaxy.web.framework.base module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.web.framework.base
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.web\.framework\.decorators module
|
||||
-----------------------------------------
|
||||
galaxy.web.framework.decorators module
|
||||
--------------------------------------
|
||||
|
||||
.. automodule:: galaxy.web.framework.decorators
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.web\.framework\.webapp module
|
||||
-------------------------------------
|
||||
galaxy.web.framework.webapp module
|
||||
----------------------------------
|
||||
|
||||
.. automodule:: galaxy.web.framework.webapp
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.web\.proxy package
|
||||
==========================
|
||||
galaxy.web.proxy package
|
||||
========================
|
||||
|
||||
.. automodule:: galaxy.web.proxy
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.web package
|
||||
===================
|
||||
galaxy.web package
|
||||
==================
|
||||
|
||||
.. automodule:: galaxy.web
|
||||
:members:
|
||||
@@ -14,38 +14,36 @@ Subpackages
|
||||
galaxy.web.base
|
||||
galaxy.web.framework
|
||||
galaxy.web.proxy
|
||||
galaxy.web.security
|
||||
galaxy.web.stack
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.web\.buildapp module
|
||||
----------------------------
|
||||
galaxy.web.buildapp module
|
||||
--------------------------
|
||||
|
||||
.. automodule:: galaxy.web.buildapp
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.web\.form\_builder module
|
||||
---------------------------------
|
||||
galaxy.web.form\_builder module
|
||||
-------------------------------
|
||||
|
||||
.. automodule:: galaxy.web.form_builder
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.web\.formatting module
|
||||
------------------------------
|
||||
galaxy.web.formatting module
|
||||
----------------------------
|
||||
|
||||
.. automodule:: galaxy.web.formatting
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.web\.params module
|
||||
--------------------------
|
||||
galaxy.web.params module
|
||||
------------------------
|
||||
|
||||
.. automodule:: galaxy.web.params
|
||||
:members:
|
||||
|
||||
@@ -0,0 +1,36 @@
|
||||
galaxy.web\_stack package
|
||||
=========================
|
||||
|
||||
.. automodule:: galaxy.web_stack
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.web\_stack.handlers module
|
||||
---------------------------------
|
||||
|
||||
.. automodule:: galaxy.web_stack.handlers
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.web\_stack.message module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.web_stack.message
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.web\_stack.transport module
|
||||
----------------------------------
|
||||
|
||||
.. automodule:: galaxy.web_stack.transport
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.webapps\.galaxy\.api package
|
||||
====================================
|
||||
galaxy.webapps.galaxy.api package
|
||||
=================================
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api
|
||||
:members:
|
||||
@@ -9,360 +9,368 @@ galaxy\.webapps\.galaxy\.api package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.annotations module
|
||||
------------------------------------------------
|
||||
galaxy.webapps.galaxy.api.annotations module
|
||||
--------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.annotations
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.authenticate module
|
||||
-------------------------------------------------
|
||||
galaxy.webapps.galaxy.api.authenticate module
|
||||
---------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.authenticate
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.cloud module
|
||||
------------------------------------------
|
||||
galaxy.webapps.galaxy.api.cloud module
|
||||
--------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.cloud
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.cloudauthz module
|
||||
-----------------------------------------------
|
||||
galaxy.webapps.galaxy.api.cloudauthz module
|
||||
-------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.cloudauthz
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.configuration module
|
||||
--------------------------------------------------
|
||||
galaxy.webapps.galaxy.api.configuration module
|
||||
----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.configuration
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.dataset\_collections module
|
||||
---------------------------------------------------------
|
||||
galaxy.webapps.galaxy.api.dataset\_collections module
|
||||
-----------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.dataset_collections
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.datasets module
|
||||
---------------------------------------------
|
||||
galaxy.webapps.galaxy.api.datasets module
|
||||
-----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.datasets
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.datatypes module
|
||||
----------------------------------------------
|
||||
galaxy.webapps.galaxy.api.datatypes module
|
||||
------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.datatypes
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.display\_applications module
|
||||
----------------------------------------------------------
|
||||
galaxy.webapps.galaxy.api.display\_applications module
|
||||
------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.display_applications
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.extended\_metadata module
|
||||
-------------------------------------------------------
|
||||
galaxy.webapps.galaxy.api.dynamic\_tools module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.dynamic_tools
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.galaxy.api.extended\_metadata module
|
||||
---------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.extended_metadata
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.folder\_contents module
|
||||
-----------------------------------------------------
|
||||
galaxy.webapps.galaxy.api.folder\_contents module
|
||||
-------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.folder_contents
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.folders module
|
||||
--------------------------------------------
|
||||
galaxy.webapps.galaxy.api.folders module
|
||||
----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.folders
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.forms module
|
||||
------------------------------------------
|
||||
galaxy.webapps.galaxy.api.forms module
|
||||
--------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.forms
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.genomes module
|
||||
--------------------------------------------
|
||||
galaxy.webapps.galaxy.api.genomes module
|
||||
----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.genomes
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.group\_roles module
|
||||
-------------------------------------------------
|
||||
galaxy.webapps.galaxy.api.group\_roles module
|
||||
---------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.group_roles
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.group\_users module
|
||||
-------------------------------------------------
|
||||
galaxy.webapps.galaxy.api.group\_users module
|
||||
---------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.group_users
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.groups module
|
||||
-------------------------------------------
|
||||
galaxy.webapps.galaxy.api.groups module
|
||||
---------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.groups
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.histories module
|
||||
----------------------------------------------
|
||||
galaxy.webapps.galaxy.api.histories module
|
||||
------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.histories
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.history\_contents module
|
||||
------------------------------------------------------
|
||||
galaxy.webapps.galaxy.api.history\_contents module
|
||||
--------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.history_contents
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.item\_tags module
|
||||
-----------------------------------------------
|
||||
galaxy.webapps.galaxy.api.item\_tags module
|
||||
-------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.item_tags
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.job\_files module
|
||||
-----------------------------------------------
|
||||
galaxy.webapps.galaxy.api.job\_files module
|
||||
-------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.job_files
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.jobs module
|
||||
-----------------------------------------
|
||||
galaxy.webapps.galaxy.api.jobs module
|
||||
-------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.jobs
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.libraries module
|
||||
----------------------------------------------
|
||||
galaxy.webapps.galaxy.api.libraries module
|
||||
------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.libraries
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.library\_contents module
|
||||
------------------------------------------------------
|
||||
galaxy.webapps.galaxy.api.library\_contents module
|
||||
--------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.library_contents
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.library\_datasets module
|
||||
------------------------------------------------------
|
||||
galaxy.webapps.galaxy.api.library\_datasets module
|
||||
--------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.library_datasets
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.metrics module
|
||||
--------------------------------------------
|
||||
galaxy.webapps.galaxy.api.metrics module
|
||||
----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.metrics
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.page\_revisions module
|
||||
----------------------------------------------------
|
||||
galaxy.webapps.galaxy.api.page\_revisions module
|
||||
------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.page_revisions
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.pages module
|
||||
------------------------------------------
|
||||
galaxy.webapps.galaxy.api.pages module
|
||||
--------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.pages
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.plugins module
|
||||
--------------------------------------------
|
||||
galaxy.webapps.galaxy.api.plugins module
|
||||
----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.plugins
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.provenance module
|
||||
-----------------------------------------------
|
||||
galaxy.webapps.galaxy.api.provenance module
|
||||
-------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.provenance
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.quotas module
|
||||
-------------------------------------------
|
||||
galaxy.webapps.galaxy.api.quotas module
|
||||
---------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.quotas
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.remote\_files module
|
||||
--------------------------------------------------
|
||||
galaxy.webapps.galaxy.api.remote\_files module
|
||||
----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.remote_files
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.roles module
|
||||
------------------------------------------
|
||||
galaxy.webapps.galaxy.api.roles module
|
||||
--------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.roles
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.search module
|
||||
-------------------------------------------
|
||||
galaxy.webapps.galaxy.api.search module
|
||||
---------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.search
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.tool\_data module
|
||||
-----------------------------------------------
|
||||
galaxy.webapps.galaxy.api.tool\_data module
|
||||
-------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.tool_data
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.tool\_dependencies module
|
||||
-------------------------------------------------------
|
||||
galaxy.webapps.galaxy.api.tool\_dependencies module
|
||||
---------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.tool_dependencies
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.tool\_shed\_repositories module
|
||||
-------------------------------------------------------------
|
||||
galaxy.webapps.galaxy.api.tool\_shed\_repositories module
|
||||
---------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.tool_shed_repositories
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.tools module
|
||||
------------------------------------------
|
||||
galaxy.webapps.galaxy.api.tools module
|
||||
--------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.tools
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.toolshed module
|
||||
---------------------------------------------
|
||||
galaxy.webapps.galaxy.api.toolshed module
|
||||
-----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.toolshed
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.tours module
|
||||
------------------------------------------
|
||||
galaxy.webapps.galaxy.api.tours module
|
||||
--------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.tours
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.uploads module
|
||||
--------------------------------------------
|
||||
galaxy.webapps.galaxy.api.uploads module
|
||||
----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.uploads
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.users module
|
||||
------------------------------------------
|
||||
galaxy.webapps.galaxy.api.users module
|
||||
--------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.users
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.visualizations module
|
||||
---------------------------------------------------
|
||||
galaxy.webapps.galaxy.api.visualizations module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.visualizations
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.webhooks module
|
||||
---------------------------------------------
|
||||
galaxy.webapps.galaxy.api.webhooks module
|
||||
-----------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.webhooks
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.api\.workflows module
|
||||
----------------------------------------------
|
||||
galaxy.webapps.galaxy.api.workflows module
|
||||
------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.api.workflows
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.webapps\.galaxy\.controllers package
|
||||
============================================
|
||||
galaxy.webapps.galaxy.controllers package
|
||||
=========================================
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.controllers
|
||||
:members:
|
||||
@@ -9,160 +9,168 @@ galaxy\.webapps\.galaxy\.controllers package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.webapps\.galaxy\.controllers\.admin module
|
||||
--------------------------------------------------
|
||||
galaxy.webapps.galaxy.controllers.admin module
|
||||
----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.controllers.admin
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.controllers\.admin\_toolshed module
|
||||
------------------------------------------------------------
|
||||
galaxy.webapps.galaxy.controllers.admin\_toolshed module
|
||||
--------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.controllers.admin_toolshed
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.controllers\.async module
|
||||
--------------------------------------------------
|
||||
galaxy.webapps.galaxy.controllers.async module
|
||||
----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.controllers.async
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.controllers\.authnz module
|
||||
---------------------------------------------------
|
||||
galaxy.webapps.galaxy.controllers.authnz module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.controllers.authnz
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.controllers\.biostar module
|
||||
----------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.controllers.biostar
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.controllers\.data\_manager module
|
||||
----------------------------------------------------------
|
||||
galaxy.webapps.galaxy.controllers.data\_manager module
|
||||
------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.controllers.data_manager
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.controllers\.dataset module
|
||||
----------------------------------------------------
|
||||
galaxy.webapps.galaxy.controllers.dataset module
|
||||
------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.controllers.dataset
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.controllers\.error module
|
||||
--------------------------------------------------
|
||||
galaxy.webapps.galaxy.controllers.error module
|
||||
----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.controllers.error
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.controllers\.forms module
|
||||
--------------------------------------------------
|
||||
galaxy.webapps.galaxy.controllers.forms module
|
||||
----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.controllers.forms
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.controllers\.history module
|
||||
----------------------------------------------------
|
||||
galaxy.webapps.galaxy.controllers.history module
|
||||
------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.controllers.history
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.controllers\.interactive\_environments module
|
||||
----------------------------------------------------------------------
|
||||
galaxy.webapps.galaxy.controllers.interactive\_environments module
|
||||
------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.controllers.interactive_environments
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.controllers\.library module
|
||||
----------------------------------------------------
|
||||
galaxy.webapps.galaxy.controllers.library module
|
||||
------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.controllers.library
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.controllers\.page module
|
||||
-------------------------------------------------
|
||||
galaxy.webapps.galaxy.controllers.openid module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.controllers.openid
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.galaxy.controllers.page module
|
||||
---------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.controllers.page
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.controllers\.root module
|
||||
-------------------------------------------------
|
||||
galaxy.webapps.galaxy.controllers.root module
|
||||
---------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.controllers.root
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.controllers\.tag module
|
||||
------------------------------------------------
|
||||
galaxy.webapps.galaxy.controllers.shed\_tool\_static module
|
||||
-----------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.controllers.shed_tool_static
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.galaxy.controllers.tag module
|
||||
--------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.controllers.tag
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.controllers\.tool\_runner module
|
||||
---------------------------------------------------------
|
||||
galaxy.webapps.galaxy.controllers.tool\_runner module
|
||||
-----------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.controllers.tool_runner
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.controllers\.user module
|
||||
-------------------------------------------------
|
||||
galaxy.webapps.galaxy.controllers.user module
|
||||
---------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.controllers.user
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.controllers\.userskeys module
|
||||
------------------------------------------------------
|
||||
galaxy.webapps.galaxy.controllers.userskeys module
|
||||
--------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.controllers.userskeys
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.controllers\.visualization module
|
||||
----------------------------------------------------------
|
||||
galaxy.webapps.galaxy.controllers.visualization module
|
||||
------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.controllers.visualization
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.controllers\.workflow module
|
||||
-----------------------------------------------------
|
||||
galaxy.webapps.galaxy.controllers.workflow module
|
||||
-------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.controllers.workflow
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.webapps\.galaxy package
|
||||
===============================
|
||||
galaxy.webapps.galaxy package
|
||||
=============================
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy
|
||||
:members:
|
||||
@@ -17,16 +17,16 @@ Subpackages
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.webapps\.galaxy\.buildapp module
|
||||
----------------------------------------
|
||||
galaxy.webapps.galaxy.buildapp module
|
||||
-------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.buildapp
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.galaxy\.config\_watchers module
|
||||
------------------------------------------------
|
||||
galaxy.webapps.galaxy.config\_watchers module
|
||||
---------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.config_watchers
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.webapps\.reports\.controllers package
|
||||
=============================================
|
||||
galaxy.webapps.reports.controllers package
|
||||
==========================================
|
||||
|
||||
.. automodule:: galaxy.webapps.reports.controllers
|
||||
:members:
|
||||
@@ -9,72 +9,72 @@ galaxy\.webapps\.reports\.controllers package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.webapps\.reports\.controllers\.history module
|
||||
-----------------------------------------------------
|
||||
galaxy.webapps.reports.controllers.history module
|
||||
-------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.reports.controllers.history
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.reports\.controllers\.home module
|
||||
--------------------------------------------------
|
||||
galaxy.webapps.reports.controllers.home module
|
||||
----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.reports.controllers.home
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.reports\.controllers\.jobs module
|
||||
--------------------------------------------------
|
||||
galaxy.webapps.reports.controllers.jobs module
|
||||
----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.reports.controllers.jobs
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.reports\.controllers\.query module
|
||||
---------------------------------------------------
|
||||
galaxy.webapps.reports.controllers.query module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.reports.controllers.query
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.reports\.controllers\.root module
|
||||
--------------------------------------------------
|
||||
galaxy.webapps.reports.controllers.root module
|
||||
----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.reports.controllers.root
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.reports\.controllers\.system module
|
||||
----------------------------------------------------
|
||||
galaxy.webapps.reports.controllers.system module
|
||||
------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.reports.controllers.system
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.reports\.controllers\.tools module
|
||||
---------------------------------------------------
|
||||
galaxy.webapps.reports.controllers.tools module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.reports.controllers.tools
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.reports\.controllers\.users module
|
||||
---------------------------------------------------
|
||||
galaxy.webapps.reports.controllers.users module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.reports.controllers.users
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.reports\.controllers\.workflows module
|
||||
-------------------------------------------------------
|
||||
galaxy.webapps.reports.controllers.workflows module
|
||||
---------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.reports.controllers.workflows
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.webapps\.reports\.framework package
|
||||
===========================================
|
||||
galaxy.webapps.reports.framework package
|
||||
========================================
|
||||
|
||||
.. automodule:: galaxy.webapps.reports.framework
|
||||
:members:
|
||||
@@ -9,8 +9,8 @@ galaxy\.webapps\.reports\.framework package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.webapps\.reports\.framework\.grids module
|
||||
-------------------------------------------------
|
||||
galaxy.webapps.reports.framework.grids module
|
||||
---------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.reports.framework.grids
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.webapps\.reports package
|
||||
================================
|
||||
galaxy.webapps.reports package
|
||||
==============================
|
||||
|
||||
.. automodule:: galaxy.webapps.reports
|
||||
:members:
|
||||
@@ -17,24 +17,24 @@ Subpackages
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.webapps\.reports\.app module
|
||||
------------------------------------
|
||||
galaxy.webapps.reports.app module
|
||||
---------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.reports.app
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.reports\.buildapp module
|
||||
-----------------------------------------
|
||||
galaxy.webapps.reports.buildapp module
|
||||
--------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.reports.buildapp
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.reports\.config module
|
||||
---------------------------------------
|
||||
galaxy.webapps.reports.config module
|
||||
------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.reports.config
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.webapps package
|
||||
=======================
|
||||
galaxy.webapps package
|
||||
======================
|
||||
|
||||
.. automodule:: galaxy.webapps
|
||||
:members:
|
||||
@@ -18,16 +18,16 @@ Subpackages
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.webapps\.config\_manage module
|
||||
--------------------------------------
|
||||
galaxy.webapps.config\_manage module
|
||||
------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.config_manage
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.util module
|
||||
----------------------------
|
||||
galaxy.webapps.util module
|
||||
--------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.util
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.webapps\.tool\_shed\.api package
|
||||
========================================
|
||||
galaxy.webapps.tool\_shed.api package
|
||||
=====================================
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.api
|
||||
:members:
|
||||
@@ -9,64 +9,64 @@ galaxy\.webapps\.tool\_shed\.api package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.webapps\.tool\_shed\.api\.authenticate module
|
||||
-----------------------------------------------------
|
||||
galaxy.webapps.tool\_shed.api.authenticate module
|
||||
-------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.api.authenticate
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.tool\_shed\.api\.categories module
|
||||
---------------------------------------------------
|
||||
galaxy.webapps.tool\_shed.api.categories module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.api.categories
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.tool\_shed\.api\.configuration module
|
||||
------------------------------------------------------
|
||||
galaxy.webapps.tool\_shed.api.configuration module
|
||||
--------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.api.configuration
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.tool\_shed\.api\.groups module
|
||||
-----------------------------------------------
|
||||
galaxy.webapps.tool\_shed.api.groups module
|
||||
-------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.api.groups
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.tool\_shed\.api\.repositories module
|
||||
-----------------------------------------------------
|
||||
galaxy.webapps.tool\_shed.api.repositories module
|
||||
-------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.api.repositories
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.tool\_shed\.api\.repository\_revisions module
|
||||
--------------------------------------------------------------
|
||||
galaxy.webapps.tool\_shed.api.repository\_revisions module
|
||||
----------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.api.repository_revisions
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.tool\_shed\.api\.tools module
|
||||
----------------------------------------------
|
||||
galaxy.webapps.tool\_shed.api.tools module
|
||||
------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.api.tools
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.tool\_shed\.api\.users module
|
||||
----------------------------------------------
|
||||
galaxy.webapps.tool\_shed.api.users module
|
||||
------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.api.users
|
||||
:members:
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
galaxy\.webapps\.tool\_shed\.controllers package
|
||||
================================================
|
||||
galaxy.webapps.tool\_shed.controllers package
|
||||
=============================================
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.controllers
|
||||
:members:
|
||||
@@ -9,56 +9,56 @@ galaxy\.webapps\.tool\_shed\.controllers package
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy\.webapps\.tool\_shed\.controllers\.admin module
|
||||
------------------------------------------------------
|
||||
galaxy.webapps.tool\_shed.controllers.admin module
|
||||
--------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.controllers.admin
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.tool\_shed\.controllers\.groups module
|
||||
-------------------------------------------------------
|
||||
galaxy.webapps.tool\_shed.controllers.groups module
|
||||
---------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.controllers.groups
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.tool\_shed\.controllers\.hg module
|
||||
---------------------------------------------------
|
||||
galaxy.webapps.tool\_shed.controllers.hg module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.controllers.hg
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.tool\_shed\.controllers\.repository module
|
||||
-----------------------------------------------------------
|
||||
galaxy.webapps.tool\_shed.controllers.repository module
|
||||
-------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.controllers.repository
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.tool\_shed\.controllers\.repository\_review module
|
||||
-------------------------------------------------------------------
|
||||
galaxy.webapps.tool\_shed.controllers.repository\_review module
|
||||
---------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.controllers.repository_review
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.tool\_shed\.controllers\.upload module
|
||||
-------------------------------------------------------
|
||||
galaxy.webapps.tool\_shed.controllers.upload module
|
||||
---------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.controllers.upload
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy\.webapps\.tool\_shed\.controllers\.user module
|
||||
-----------------------------------------------------
|
||||
galaxy.webapps.tool\_shed.controllers.user module
|
||||
-------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.controllers.user
|
||||
:members:
|
||||
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user