Nicola Soranzo
670a5f2c85
Merge branch 'release_16.01' into dev
2016-01-28 19:00:04 +00:00
Nate Coraor
33ba1face9
Link from the 16.01 announcement to the Admin wheels documentation,
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document the process of adding new wheels.
2016-01-28 13:13:09 -05:00
Martin Cech
f499ec0cab
Merge pull request #1585 from jmchilton/16.01_release_notes
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[16.01] Release notes for 16.01
2016-01-28 10:30:33 -05:00
John Chilton
a2887dfe18
Merge 16.01 into dev.
2016-01-28 10:52:22 +00:00
Nicola Soranzo
30dcd0e39f
Merge branch 'release_16.01' into dev
2016-01-27 12:02:01 +00:00
Nate Coraor
168f453094
Suggest installing virtualenv from brew
2016-01-26 16:49:39 -05:00
Nate Coraor
9827f32775
conda-requirements.txt renamed to conda-environment.txt
2016-01-26 16:48:38 -05:00
Nate Coraor
dc801dc1f6
Add admin documentation for framework dependencies (wheels) for the
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16.01 release.
2016-01-26 16:17:49 -05:00
Nicola Soranzo
08fbd8923a
Merge some entries. Add some missing PRs.
2016-01-26 20:51:43 +00:00
Nicola Soranzo
281a53d975
Small RST fixes.
2016-01-26 20:03:34 +00:00
Martin Cech
d1dcf25f57
add plural form
2016-01-26 13:11:24 -05:00
John Chilton
6c487941d2
Adjust tooling language based on note from @nsoranzo.
2016-01-26 11:58:29 +00:00
John Chilton
79dfff4d65
Typo discovered by @nsoranzo
2016-01-26 11:53:03 +00:00
Martin Cech
f0b5f7757e
add link to Main tour; add sentence to WF nesting
2016-01-26 11:15:36 -05:00
John Chilton
4064bbf94f
16.01 release notes.
2016-01-26 10:22:39 +00:00
John Chilton
528f80e40b
Auto-generate 16.01 release notes.
2016-01-26 10:03:08 +00:00
John Chilton
53c699a4c3
Add note about how to modify labels in Galaxy project.
2016-01-25 15:37:21 +00:00
John Chilton
20f6bce375
New areas.
2016-01-25 15:35:56 +00:00
John Chilton
55635bff82
Update `area/` list to reflect current areas.
2016-01-25 15:27:43 +00:00
Dave B
2f760a2e6d
Fix formatting.
2016-01-06 16:33:20 -05:00
Björn Grüning
016fd38e72
Merge pull request #1148 from markiskander/bcfgz_to_bcf_converter
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Bcf.gz to bcf (and reverse) converters + bcf_bgzip data type
2016-01-06 11:48:33 +01:00
John Chilton
1148081435
Implement a conda dependency resolver.
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Much more information on planemo PR that I used to build a test bed for this:
https://github.com/galaxyproject/planemo/pull/392
Also syncs galaxy with planemo shared library changed.
2015-12-26 22:46:28 +00:00
John Chilton
6580d51293
Merge pull request #1296 from pvanheus/env-modules-resolve
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Documentation for dependency resolvers
2015-12-11 15:00:19 -05:00
Peter van Heusden
73b6fb23db
* Replaced all references to "version number" with "version string"
2015-12-11 20:53:00 +02:00
Peter van Heusden
035f1b5d66
* Incorporate documentation fixes from nsoranzo
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* Replace {} and .format with %s and % to preserve Python 2.6 compatibility
* Add a modulepath= paranter to the fake resolver (Bunch object) used to test the modules dependency resolver
2015-12-11 20:43:03 +02:00
Peter van Heusden
584d886b5e
* Mention modulepath attribute in dependency resolver docs
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* Use modulepath in both environment modules resolvers
* Export MODULEPATH in generated shell command
* Add logging for operation of dependency resolvers
2015-12-11 20:06:13 +02:00
Peter van Heusden
e40fbe5374
* Add comment about base_path in sample config
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* Add documentation on dependency resolvers
2015-12-11 07:31:10 +02:00
Eric Rasche
7cf98d32d8
Align opinions with @jmchilton
2015-12-04 13:36:01 -06:00
Eric Rasche
a0c7d87db3
Ease the grunt uglify process
2015-12-04 12:09:40 -06:00
Nicola Soranzo
3524476bc6
Merge branch 'master' into dev
2015-12-01 11:42:16 +00:00
Martin Cech
5bd898118f
deprecate TS direct hg api
2015-11-30 14:35:45 -05:00
Nicola Soranzo
4f6aad473d
Merge branch 'master' into dev
2015-11-25 16:18:37 +00:00
Mark Iskander
825a20ef81
Modified more names, added bcf_bgzip to datatypes, added converters going both ways
2015-11-20 13:49:04 -06:00
Mark Iskander
6cd550e0c7
Added the bcf_bgzip_to_bcf converter to datatype.converters.rst, renamed files to follow standard naming scheme
2015-11-20 12:25:00 -06:00
Dannon Baker
a5aeea0685
Slight wording tweak
2015-11-20 11:56:27 -05:00
Martin Cech
e9ed5bfa62
clarify the bitbucket support
2015-11-20 11:45:58 -05:00
Martin Cech
76fc6becd6
add text highlights
2015-11-20 10:30:04 -05:00
Martin Cech
cf16e2c7d3
add bitbucker deprecation notice
2015-11-20 10:27:59 -05:00
Nate Coraor
72faca1a3a
Document GIE proxy config for nginx, mention the Ansible role.
2015-11-18 14:15:40 -05:00
Nicola Soranzo
13eb47e789
Merge pull request #1020 from dannon/issue_procedure
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[PROCEDURES] Issue procedure linkage
2015-11-16 15:10:24 +00:00
Nicola Soranzo
3c7082c64a
Fix doc/source/lib using "sphinx-apidoc -M -f -o doc/source/lib/ lib/"
2015-10-26 19:29:13 +00:00
Dannon Baker
9bbb3b97bd
Fix link from org to issues.
2015-10-23 09:28:23 -04:00
Dannon Baker
bc217b6a27
Place correctly after the last section.
2015-10-22 15:26:12 -04:00
Dannon Baker
daf505eacc
Point organization document to issue handling for binding procedure
2015-10-22 15:04:39 -04:00
James Taylor
1c527d3784
Merge pull request #902 from dannon/issue_management
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New policies for bug and issue handling, and roadmap management.
2015-10-22 14:29:27 -04:00
Dannon Baker
02183910cf
Add major/minor 'extra' tags proposed by @jmchilton for release notes management.
2015-10-19 13:20:04 -04:00
Eric Rasche
5dd7370b84
Add a line of documentation about syncing
2015-10-15 16:06:23 -05:00
Martin Cech
4f4526bc30
deprecate old Data Libraries
2015-10-14 18:36:53 -04:00
Eric Rasche
705445a2f2
Correct doc script name
2015-10-14 14:51:21 -05:00
Eric Rasche
1f9be2410b
Documented use of library upload tool
2015-10-14 14:48:30 -05:00
Nicola Soranzo