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Commit Graph
191 Commits
Author SHA1 Message Date
mvdbeek 521405136a Merge branch 'release_23.1' into dev 2023-07-29 12:28:41 +02:00
mvdbeek c314336705 Merge branch 'release_23.0' into release_23.1 
# Conflicts:
#	lib/galaxy/version.py
#	packages/app/HISTORY.rst
#	packages/app/setup.cfg
#	packages/auth/HISTORY.rst
#	packages/auth/setup.cfg
#	packages/config/HISTORY.rst
#	packages/config/setup.cfg
#	packages/data/HISTORY.rst
#	packages/data/setup.cfg
#	packages/files/HISTORY.rst
#	packages/files/setup.cfg
#	packages/job_execution/HISTORY.rst
#	packages/job_execution/setup.cfg
#	packages/job_metrics/HISTORY.rst
#	packages/job_metrics/setup.cfg
#	packages/navigation/HISTORY.rst
#	packages/navigation/setup.cfg
#	packages/objectstore/HISTORY.rst
#	packages/objectstore/setup.cfg
#	packages/selenium/HISTORY.rst
#	packages/selenium/setup.cfg
#	packages/test_api/HISTORY.rst
#	packages/test_api/setup.cfg
#	packages/test_base/HISTORY.rst
#	packages/test_base/setup.cfg
#	packages/test_driver/HISTORY.rst
#	packages/test_driver/setup.cfg
#	packages/tool_util/HISTORY.rst
#	packages/tool_util/setup.cfg
#	packages/tours/HISTORY.rst
#	packages/tours/setup.cfg
#	packages/util/HISTORY.rst
#	packages/util/setup.cfg
#	packages/web_apps/HISTORY.rst
#	packages/web_apps/setup.cfg
#	packages/web_framework/HISTORY.rst
#	packages/web_framework/setup.cfg
#	packages/web_stack/HISTORY.rst
#	packages/web_stack/setup.cfg
 2023-07-29 12:28:39 +02:00
mvdbeek 2fbbfd8417 Start work on 23.0.6.dev0 2023-07-29 12:28:35 +02:00
mvdbeek af730bc6b5 Create version 23.0.5 2023-07-29 12:28:32 +02:00
Nate Coraor 8fee25f084 Merge branch 'release_23.1' into dev 2023-06-30 17:14:03 -04:00
Nate Coraor ea07ddba98 Merge branch 'release_23.0' into release_23.1 
# Conflicts:
#	lib/galaxy/version.py
#	packages/app/HISTORY.rst
#	packages/app/setup.cfg
#	packages/auth/HISTORY.rst
#	packages/auth/setup.cfg
#	packages/config/HISTORY.rst
#	packages/config/setup.cfg
#	packages/data/HISTORY.rst
#	packages/data/setup.cfg
#	packages/files/HISTORY.rst
#	packages/files/setup.cfg
#	packages/job_execution/HISTORY.rst
#	packages/job_execution/setup.cfg
#	packages/job_metrics/HISTORY.rst
#	packages/job_metrics/setup.cfg
#	packages/navigation/HISTORY.rst
#	packages/navigation/setup.cfg
#	packages/objectstore/HISTORY.rst
#	packages/objectstore/setup.cfg
#	packages/selenium/HISTORY.rst
#	packages/selenium/setup.cfg
#	packages/test_api/HISTORY.rst
#	packages/test_api/setup.cfg
#	packages/test_base/HISTORY.rst
#	packages/test_base/setup.cfg
#	packages/test_driver/HISTORY.rst
#	packages/test_driver/setup.cfg
#	packages/tool_util/HISTORY.rst
#	packages/tool_util/setup.cfg
#	packages/tours/HISTORY.rst
#	packages/tours/setup.cfg
#	packages/util/HISTORY.rst
#	packages/util/setup.cfg
#	packages/web_apps/HISTORY.rst
#	packages/web_apps/setup.cfg
#	packages/web_framework/HISTORY.rst
#	packages/web_framework/setup.cfg
#	packages/web_stack/HISTORY.rst
#	packages/web_stack/setup.cfg
 2023-06-30 17:14:03 -04:00
Nate Coraor 25b52a97f7 Start work on 23.0.5.dev0 2023-06-30 17:14:00 -04:00
Nate Coraor 03d9eb63b8 Create version 23.0.4 2023-06-30 17:13:57 -04:00
Nate Coraor c18ed28896 Merge remote-tracking branch 'upstream/release_23.1' into dev 2023-06-30 15:57:32 -04:00
Nate Coraor 2ca678482f Merge remote-tracking branch 'upstream/release_23.0' into release_23.1 2023-06-30 15:56:50 -04:00
Nate Coraor ab1e0485d7 Pin pydantic in packages to <2 2023-06-30 14:51:18 -04:00
Martin Cech 469ff484b6 Merge branch 'release_23.1' into dev 2023-06-27 15:17:21 -07:00
Nicola Soranzo 4c0e27c9ab Remove pin on `packaging` in packages 
Follow-up on https://github.com/galaxyproject/galaxy/pull/16058
where the pin was removed from ``pyproject.toml`` .
 2023-06-27 12:55:24 +01:00
mvdbeek bb65b07584 Merge branch 'release_23.1' into dev 2023-06-26 09:32:44 +02:00
mvdbeek 0b1a41bd86 Merge branch 'release_23.0' into release_23.1 
# Conflicts:
#	lib/galaxy/version.py
#	packages/app/HISTORY.rst
#	packages/app/setup.cfg
#	packages/auth/HISTORY.rst
#	packages/auth/setup.cfg
#	packages/config/HISTORY.rst
#	packages/config/setup.cfg
#	packages/data/HISTORY.rst
#	packages/data/setup.cfg
#	packages/files/HISTORY.rst
#	packages/files/setup.cfg
#	packages/job_execution/HISTORY.rst
#	packages/job_execution/setup.cfg
#	packages/job_metrics/HISTORY.rst
#	packages/job_metrics/setup.cfg
#	packages/navigation/HISTORY.rst
#	packages/navigation/setup.cfg
#	packages/objectstore/HISTORY.rst
#	packages/objectstore/setup.cfg
#	packages/selenium/HISTORY.rst
#	packages/selenium/setup.cfg
#	packages/test_api/HISTORY.rst
#	packages/test_api/setup.cfg
#	packages/test_base/HISTORY.rst
#	packages/test_base/setup.cfg
#	packages/test_driver/HISTORY.rst
#	packages/test_driver/setup.cfg
#	packages/tool_util/HISTORY.rst
#	packages/tool_util/setup.cfg
#	packages/tours/HISTORY.rst
#	packages/tours/setup.cfg
#	packages/util/HISTORY.rst
#	packages/util/setup.cfg
#	packages/web_apps/HISTORY.rst
#	packages/web_apps/setup.cfg
#	packages/web_framework/HISTORY.rst
#	packages/web_framework/setup.cfg
#	packages/web_stack/HISTORY.rst
#	packages/web_stack/setup.cfg
 2023-06-26 09:32:42 +02:00
mvdbeek 1ef440e92c Start work on 23.0.4.dev0 2023-06-26 09:32:37 +02:00
mvdbeek b4adbb4ec5 Create version 23.0.3 2023-06-26 09:32:32 +02:00
mvdbeek 5413333aac Merge branch 'release_23.0' into dev 
# Conflicts:
#	lib/galaxy/version.py
 2023-06-13 17:58:26 +02:00
mvdbeek 414abff510 Start work on 23.0.3.dev0 2023-06-13 17:58:19 +02:00
mvdbeek a7f0a365be Create version 23.0.2 2023-06-13 17:58:13 +02:00
Matthias Bernt a5f75e7ead Merge branch 'release_23.0' into dev 2023-06-08 15:54:42 +02:00
Matthias Bernt aa9cc5b9e8 Start work on 23.1.dev0 2023-06-08 15:54:32 +02:00
Matthias Bernt f722e122f7 Create version 23.0.1 2023-06-08 15:54:28 +02:00
Nicola Soranzo afc11e2ebc Merge branch 'release_23.0' into dev 2023-05-30 17:49:58 +01:00
mvdbeek d8e62f8f5a Add script for creating (point) releases 
Still working on it, but it's minimally useful already.
 2023-05-28 11:15:57 +02:00
mvdbeek ff7908f6be Merge branch 'release_23.0' into dev 2023-05-17 12:15:05 +02:00
mvdbeek 49b0663328 Add missing dates for versions that contain changelog entries 2023-05-15 13:17:12 +02:00
mvdbeek 756d047e1c Merge branch 'release_23.0' into dev 2023-03-06 18:08:05 +01:00
mvdbeek 026b906616 Merge branch 'release_22.05' into release_23.0 2023-03-03 16:40:49 +01:00
Matthias Bernt 0451ad485b package name with dashes 2023-03-02 09:27:55 +01:00
Matthias Bernt 684ae67bd7 add conda_package_streaming to tool_util setup.cfg 2023-03-01 22:13:15 +01:00
Marius van den Beek 24d7809f4a Merge pull request #15446 from bernt-matthias/conda-package-fmt-change 
Fix for new style conda packages
 2023-03-01 15:42:18 +01:00
Nicola Soranzo 35d8f6a04a Unpin Beaker requirement 
This was initially pinned in https://github.com/galaxyproject/galaxy/pull/11192
but I cannot recall why exactly.
 2023-03-01 12:29:28 +00:00
Matthias Bernt 910ca41c22 add conda_package_streaming to tool_util setup.cfg 2023-02-26 10:44:38 +01:00
Nicola Soranzo 4ca163b9ca Add support for Python 3.11 
- Update Python dependencies that didn't have a cp311 wheel: h5py and
  psycopg2-binary.
- For packages for which there is no recent version that works on all
  Python versions supported by Galaxy (numpy and scipy), replace old
  requirement with multiple Python-version-specific requirements.
 2023-02-02 01:18:25 +00:00
Nicola Soranzo ee7d51f2f5 Merge branch 'release_22.05' into dev 2022-12-09 11:36:00 +00:00
Nicola Soranzo 1eceea2a45 Add/remove/pin/unpin Python requirements 2022-12-09 02:01:26 +00:00
mvdbeek 9c92c55a31 Reset all package HISTORY.rst file to 22.5.0.dev0 2022-12-08 13:24:06 +01:00
Nicola Soranzo 2b362fbd1d Merge branch 'release_22.05' into dev 2022-11-17 22:50:45 +00:00
Nicola Soranzo 988f4e583c Merge branch 'release_22.01' into release_22.05 2022-11-17 22:48:35 +00:00
mvdbeek df7712927b Start work on galaxy-tool-util 22.1.6 2022-11-14 10:28:55 +01:00
mvdbeek 642c28a3e9 Release galaxy-tool-util-22.1.5 2022-11-14 10:22:28 +01:00
Nicola Soranzo 1048abe3cf Update cwltool pin 2022-11-10 01:13:41 +00:00
Nicola Soranzo 11597099a1 Merge branch 'release_22.05' into dev 2022-10-28 13:27:44 +01:00
Nicola Soranzo 06f518220f Merge branch 'release_22.01' into release_22.05 2022-10-28 13:25:16 +01:00
mvdbeek 238ab85379 Start work on galaxy-tool-util 22.1.5 2022-10-28 10:31:56 +02:00
mvdbeek 52f60b50a4 Release tool-util package 22.1.4 2022-10-28 10:30:23 +02:00
Nicola Soranzo 895a18c7e8 Add missing `unittest_utils` package to galaxy-tool-util 
Fix:

```
ModuleNotFoundError: No module named 'galaxy.tool_util.unittest_utils'
```

in https://github.com/conda-forge/galaxy-tool-util-feedstock/pull/4 .
 2022-10-28 00:23:21 +01:00
mvdbeek 7ff1026296 Start work on galaxy-tool-util 22.1.4 2022-10-27 18:30:21 +02:00
mvdbeek 9bf0b4ed1f Release tool-util package 22.1.3 2022-10-27 18:29:48 +02:00