opensource/galaxy
3
0
Fork 0
mirror of https://github.com/galaxyproject/galaxy.git synced 2026-09-19 10:51:34 +08:00
Code Issues Packages Projects Releases Wiki Activity

Merge branch 'release_23.0' into dev

Browse Source
This commit is contained in:
Matthias Bernt
2023-06-08 15:54:42 +02:00
parent 75c861f5c4 aa9cc5b9e8
commit a5f75e7ead
39 changed files with 435 additions and 193 deletions
Download Patch File Download Diff File Expand all files Collapse all files
lib/galaxy/model/__init__.py
+1 -1
View File
@@ -9019,7 +9019,7 @@ class FormDefinition(Base, Dictifiable, RepresentById):
).get(field["type"], TextField)
form_def["inputs"].append(
FieldClass(
user=user, value=values.get(field["name"], field["default"]), security=security, **field
user=user, value=values.get(field["name"], field.get("default")), security=security, **field
).to_dict()
)
return form_def
packages/app/HISTORY.rst
+42 -7
View File
@@ -3,19 +3,54 @@ History
.. to_doc
---------------------
22.5.0.dev0
---------------------
---------
23.1.dev0
---------
---------------------
-------------------
23.0.1 (2023-06-08)
-------------------
=========
Bug fixes
=========
* Display DCE in job parameter component, allow rerunning with DCE input by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15744 <https://github.com/galaxyproject/galaxy/pull/15744>`_
* Fix mixed outputs_to_working_directory pulsar destinations by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15927 <https://github.com/galaxyproject/galaxy/pull/15927>`_
* Update Gravity to 1.0.3 by `@natefoo <https://github.com/natefoo>`_ in `#15939 <https://github.com/galaxyproject/galaxy/pull/15939>`_
* Various fixes to path prefix handling by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16033 <https://github.com/galaxyproject/galaxy/pull/16033>`_
* Fix case sensitive filtering by name in histories by `@davelopez <https://github.com/davelopez>`_ in `#16036 <https://github.com/galaxyproject/galaxy/pull/16036>`_
* Fix gcsfs test discovery by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16039 <https://github.com/galaxyproject/galaxy/pull/16039>`_
* Replace httpbin service with pytest-httpserver by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16042 <https://github.com/galaxyproject/galaxy/pull/16042>`_
* Update pulsar to 0.15.2 by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16050 <https://github.com/galaxyproject/galaxy/pull/16050>`_
* Anonymous User tool link bug fix by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#16065 <https://github.com/galaxyproject/galaxy/pull/16065>`_
* Fix BCO export by updating gxformat2 by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16081 <https://github.com/galaxyproject/galaxy/pull/16081>`_
* Fix job failure handling when condor indicates job failure by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16096 <https://github.com/galaxyproject/galaxy/pull/16096>`_
* Fix dataype_change not updating HDCA update_time by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16099 <https://github.com/galaxyproject/galaxy/pull/16099>`_
* Extract HDA for code_file validate_input hook by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16120 <https://github.com/galaxyproject/galaxy/pull/16120>`_
* Fix sort error when re-running job with DCE collection input by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16126 <https://github.com/galaxyproject/galaxy/pull/16126>`_
* Fix related-hid in bulk contents API by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16128 <https://github.com/galaxyproject/galaxy/pull/16128>`_
* Fix rank calculation for jobs waiting to be run by anonymous users by `@jdavcs <https://github.com/jdavcs>`_ in `#16137 <https://github.com/galaxyproject/galaxy/pull/16137>`_
* Tool warnings can either be None or a Dictionary but not a String by `@guerler <https://github.com/guerler>`_ in `#16183 <https://github.com/galaxyproject/galaxy/pull/16183>`_
* Pin minimum tpv version by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16201 <https://github.com/galaxyproject/galaxy/pull/16201>`_
=============
Other changes
=============
* Startup fix when tool removed between reboot by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16175 <https://github.com/galaxyproject/galaxy/pull/16175>`_
-------------------
20.9.0 (2020-10-15)
---------------------
-------------------
* First release from the 20.09 branch of Galaxy.
---------------------
-------------------
20.5.0 (2020-07-04)
---------------------
-------------------
* First release from the 20.05 branch of Galaxy.
packages/app/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-app
url = https://github.com/galaxyproject/galaxy
version = 22.5.0.dev0
version = 23.1.dev0
[options]
include_package_data = True
@@ -84,4 +84,4 @@ console_scripts =
[options.packages.find]
exclude =
galaxy.tools.bundled*
tests*
tests*
packages/auth/HISTORY.rst
+14 -7
View File
@@ -3,19 +3,26 @@ History
.. to_doc
---------------------
22.5.0.dev0
---------------------
---------
23.1.dev0
---------
---------------------
-------------------
23.0.1 (2023-06-08)
-------------------
No recorded changes since last release
-------------------
20.9.0 (2020-10-15)
---------------------
-------------------
* First release from the 20.09 branch of Galaxy.
---------------------
-------------------
20.5.0 (2020-07-04)
---------------------
-------------------
* First release from the 20.05 branch of Galaxy.
packages/auth/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-auth
url = https://github.com/galaxyproject/galaxy
version = 22.5.0.dev0
version = 23.1.dev0
[options]
include_package_data = True
@@ -39,4 +39,4 @@ python_requires = >=3.7
[options.packages.find]
exclude =
tests*
tests*
packages/config/HISTORY.rst
+23 -5
View File
@@ -3,13 +3,31 @@ History
.. to_doc
---------------------
22.5.0.dev0
---------------------
---------
23.1.dev0
---------
---------------------
-------------------
23.0.1 (2023-06-08)
-------------------
=========
Bug fixes
=========
* Change default watchdog inotify_buffer log level to info by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15967 <https://github.com/galaxyproject/galaxy/pull/15967>`_
============
Enhancements
============
* Add ``ca_certs`` option for sentry client by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15943 <https://github.com/galaxyproject/galaxy/pull/15943>`_
-------------------
22.1.1 (2022-08-22)
---------------------
-------------------
* Initial release
packages/config/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-config
url = https://github.com/galaxyproject/galaxy
version = 22.5.0.dev0
version = 23.1.dev0
[options]
include_package_data = True
@@ -46,4 +46,4 @@ console_scripts =
[options.packages.find]
exclude =
tests*
tests*
packages/data/HISTORY.rst
+31 -8
View File
@@ -3,21 +3,44 @@ History
.. to_doc
---------------------
22.5.0.dev0
---------------------
---------
23.1.dev0
---------
---------------------
-------------------
23.0.1 (2023-06-08)
-------------------
=========
Bug fixes
=========
* Display DCE in job parameter component, allow rerunning with DCE input by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15744 <https://github.com/galaxyproject/galaxy/pull/15744>`_
* Fix folder listing via file browser by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15950 <https://github.com/galaxyproject/galaxy/pull/15950>`_
* Fix RO-crate invocation export with complex collections by `@davelopez <https://github.com/davelopez>`_ in `#15971 <https://github.com/galaxyproject/galaxy/pull/15971>`_
* Backport Improve display chunk generation for BAMs by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16007 <https://github.com/galaxyproject/galaxy/pull/16007>`_
* Ensure history export contains all expected datasets by `@davelopez <https://github.com/davelopez>`_ in `#16013 <https://github.com/galaxyproject/galaxy/pull/16013>`_
* Various fixes to path prefix handling by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16033 <https://github.com/galaxyproject/galaxy/pull/16033>`_
* Fix dataype_change not updating HDCA update_time by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16099 <https://github.com/galaxyproject/galaxy/pull/16099>`_
* Fix mypy error due to alembic 1.11.0 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#16104 <https://github.com/galaxyproject/galaxy/pull/16104>`_
* Fix extended metadata file size handling by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16109 <https://github.com/galaxyproject/galaxy/pull/16109>`_
* Fix implicit converters with optional parameters by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16133 <https://github.com/galaxyproject/galaxy/pull/16133>`_
* Make ``ctx_rev`` optional in InstalledToolShedRepository response model by `@dannon <https://github.com/dannon>`_ in `#16139 <https://github.com/galaxyproject/galaxy/pull/16139>`_
* Fix optional fields being validated as missing in ts api by `@jmchilton <https://github.com/jmchilton>`_ in `#16141 <https://github.com/galaxyproject/galaxy/pull/16141>`_
* Support ro crate 0.8.0 and 0.7.0 by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16193 <https://github.com/galaxyproject/galaxy/pull/16193>`_
* Verify existence of default value attribute for user forms fields by `@guerler <https://github.com/guerler>`_ in `#16205 <https://github.com/galaxyproject/galaxy/pull/16205>`_
-------------------
20.9.0 (2020-10-15)
---------------------
-------------------
* First release from the 20.09 branch of Galaxy.
---------------------
-------------------
20.5.0 (2020-07-04)
---------------------
-------------------
* First release from the 20.05 branch of Galaxy.
packages/data/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-data
url = https://github.com/galaxyproject/galaxy
version = 22.5.0.dev0
version = 23.1.dev0
[options]
include_package_data = True
@@ -69,4 +69,4 @@ console_scripts =
[options.packages.find]
exclude =
tests*
tests*
packages/files/HISTORY.rst
+11 -5
View File
@@ -3,14 +3,20 @@ History
.. to_doc
---------------------
22.5.0.dev0
---------------------
---------
23.1.dev0
---------
---------------------
-------------------
23.0.1 (2023-06-08)
-------------------
No recorded changes since last release
-------------------
22.1.1 (2022-08-22)
---------------------
-------------------
* Initial standalone release of this package.
packages/files/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-files
url = https://github.com/galaxyproject/galaxy
version = 22.5.0.dev0
version = 23.1.dev0
[options]
include_package_data = True
@@ -40,4 +40,4 @@ python_requires = >=3.7
[options.packages.find]
exclude =
tests*
tests*
packages/job_execution/HISTORY.rst
+13 -7
View File
@@ -3,20 +3,26 @@ History
.. to_doc
---------------------
22.5.0.dev0
---------------------
---------
23.1.dev0
---------
---------------------
-------------------
23.0.1 (2023-06-08)
-------------------
No recorded changes since last release
-------------------
20.9.0 (2020-10-15)
---------------------
-------------------
* First release from the 20.09 branch of Galaxy.
---------------------
-------------------
20.5.0 (2020-07-04)
---------------------
-------------------
* First release from the 20.05 branch of Galaxy.
packages/job_execution/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-job-execution
url = https://github.com/galaxyproject/galaxy
version = 22.5.0.dev0
version = 23.1.dev0
[options]
include_package_data = True
@@ -49,4 +49,4 @@ console_scripts =
[options.packages.find]
exclude =
tests*
tests*
packages/job_metrics/HISTORY.rst
+15 -9
View File
@@ -3,26 +3,32 @@ History
.. to_doc
---------------------
22.5.0.dev0
---------------------
---------
23.1.dev0
---------
---------------------
-------------------
23.0.1 (2023-06-08)
-------------------
No recorded changes since last release
-------------------
20.9.0 (2020-10-15)
---------------------
-------------------
* First release from the 20.09 branch of Galaxy.
---------------------
-------------------
20.5.0 (2020-07-04)
---------------------
-------------------
* First release from the 20.05 branch of Galaxy.
---------------------
-------------------
19.9.0 (2019-12-16)
---------------------
-------------------
* Initial import from dev branch of Galaxy during 19.09 development cycle.
packages/job_metrics/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-job-metrics
url = https://github.com/galaxyproject/galaxy
version = 22.5.0.dev0
version = 23.1.dev0
[options]
include_package_data = True
@@ -38,4 +38,4 @@ python_requires = >=3.7
[options.packages.find]
exclude =
tests*
tests*
packages/navigation/HISTORY.rst
+14 -3
View File
@@ -3,9 +3,20 @@ History
.. to_doc
--------------------------
---------
23.1.dev0
---------
-------------------
23.0.1 (2023-06-08)
-------------------
No recorded changes since last release
------------------------
22.9.0.dev0 (2022-06-24)
--------------------------
------------------------
* First release from the 22.09 branch of Galaxy.
packages/navigation/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-navigation
url = https://github.com/galaxyproject/galaxy
version = 22.5.0.dev0
version = 23.1.dev0
[options]
include_package_data = True
@@ -39,4 +39,4 @@ python_requires = >=3.7
[options.packages.find]
exclude =
tests*
tests*
packages/objectstore/HISTORY.rst
+17 -11
View File
@@ -3,32 +3,38 @@ History
.. to_doc
---------------------
22.5.0.dev0
---------------------
---------
23.1.dev0
---------
---------------------
-------------------
23.0.1 (2023-06-08)
-------------------
No recorded changes since last release
-------------------
20.9.1 (2021-03-01)
---------------------
-------------------
* Second release from the 20.09 branch of Galaxy.
---------------------
-------------------
20.9.0 (2020-10-15)
---------------------
-------------------
* First release from the 20.09 branch of Galaxy.
---------------------
-------------------
20.5.0 (2020-07-04)
---------------------
-------------------
* First release from the 20.05 branch of Galaxy.
---------------------
-------------------
19.9.0 (2019-12-16)
---------------------
-------------------
* Initial import from dev branch of Galaxy during 19.09 development cycle.
packages/objectstore/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-objectstore
url = https://github.com/galaxyproject/galaxy
version = 22.5.0.dev0
version = 23.1.dev0
[options]
include_package_data = True
@@ -39,4 +39,4 @@ python_requires = >=3.7
[options.packages.find]
exclude =
tests*
tests*
packages/selenium/HISTORY.rst
+18 -7
View File
@@ -3,20 +3,31 @@ History
.. to_doc
---------------------
22.5.0.dev0
---------------------
---------
23.1.dev0
---------
---------------------
-------------------
23.0.1 (2023-06-08)
-------------------
============
Enhancements
============
* Add support for launching workflows via Tutorial Mode by `@hexylena <https://github.com/hexylena>`_ in `#15684 <https://github.com/galaxyproject/galaxy/pull/15684>`_
-------------------
20.9.0 (2020-10-15)
---------------------
-------------------
* First release from the 20.09 branch of Galaxy.
---------------------
-------------------
20.5.0 (2020-07-04)
---------------------
-------------------
* First release from the 20.05 branch of Galaxy.
packages/selenium/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-selenium
url = https://github.com/galaxyproject/galaxy
version = 22.5.0.dev0
version = 23.1.dev0
[options]
include_package_data = True
@@ -47,4 +47,4 @@ console_scripts =
[options.packages.find]
exclude =
tests*
tests*
packages/test_api/HISTORY.rst
+27 -5
View File
@@ -3,14 +3,36 @@ History
.. to_doc
---------------------
22.5.0.dev0
---------------------
---------
23.1.dev0
---------
---------------------
-------------------
23.0.1 (2023-06-08)
-------------------
=========
Bug fixes
=========
* Display DCE in job parameter component, allow rerunning with DCE input by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15744 <https://github.com/galaxyproject/galaxy/pull/15744>`_
* Fix folder listing via file browser by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15950 <https://github.com/galaxyproject/galaxy/pull/15950>`_
* Fix case sensitive filtering by name in histories by `@davelopez <https://github.com/davelopez>`_ in `#16036 <https://github.com/galaxyproject/galaxy/pull/16036>`_
* Fix dataype_change not updating HDCA update_time by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16099 <https://github.com/galaxyproject/galaxy/pull/16099>`_
* Extract HDA for code_file validate_input hook by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16120 <https://github.com/galaxyproject/galaxy/pull/16120>`_
============
Enhancements
============
* Add support for launching workflows via Tutorial Mode by `@hexylena <https://github.com/hexylena>`_ in `#15684 <https://github.com/galaxyproject/galaxy/pull/15684>`_
* Allow setting auto_decompress property in staging interface by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16014 <https://github.com/galaxyproject/galaxy/pull/16014>`_
-------------------
20.9.0 (2020-10-15)
---------------------
-------------------
* Initial import from dev branch of Galaxy during 20.09 branch of Galaxy.
packages/test_api/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-test-api
url = https://github.com/galaxyproject/galaxy
version = 22.5.0.dev0
version = 23.1.dev0
[options]
include_package_data = True
@@ -46,4 +46,4 @@ driver =
[options.packages.find]
exclude =
tests*
tests*
packages/test_base/HISTORY.rst
+19 -7
View File
@@ -3,20 +3,32 @@ History
.. to_doc
---------------------
22.5.0.dev0
---------------------
---------
23.1.dev0
---------
---------------------
-------------------
23.0.1 (2023-06-08)
-------------------
=========
Bug fixes
=========
* Ensure history export contains all expected datasets by `@davelopez <https://github.com/davelopez>`_ in `#16013 <https://github.com/galaxyproject/galaxy/pull/16013>`_
* Fix extended metadata file size handling by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16109 <https://github.com/galaxyproject/galaxy/pull/16109>`_
-------------------
20.9.0 (2020-10-15)
---------------------
-------------------
* Initial release from the 20.09 branch of Galaxy.
---------------------
-------------------
20.5.0 (2020-07-04)
---------------------
-------------------
* Initial import from the 20.05 branch of Galaxy.
packages/test_base/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-test-base
url = https://github.com/galaxyproject/galaxy
version = 22.5.0.dev0
version = 23.1.dev0
[options]
include_package_data = True
@@ -45,4 +45,4 @@ python_requires = >=3.7
[options.packages.find]
exclude =
tests*
tests*
packages/test_driver/HISTORY.rst
+13 -7
View File
@@ -3,20 +3,26 @@ History
.. to_doc
---------------------
22.5.0.dev0
---------------------
---------
23.1.dev0
---------
---------------------
-------------------
23.0.1 (2023-06-08)
-------------------
No recorded changes since last release
-------------------
20.9.0 (2020-10-15)
---------------------
-------------------
* First release from the 20.09 branch of Galaxy.
---------------------
-------------------
20.5.0 (2020-07-04)
---------------------
-------------------
* First release from the 20.05 branch of Galaxy.
packages/test_driver/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-test-driver
url = https://github.com/galaxyproject/galaxy
version = 22.5.0.dev0
version = 23.1.dev0
[options]
include_package_data = True
@@ -45,4 +45,4 @@ python_requires = >=3.7
[options.packages.find]
exclude =
tests*
tests*
packages/tool_util/HISTORY.rst
+48 -29
View File
@@ -3,11 +3,30 @@ History
.. to_doc
---------
23.1.dev0
---------
-------------------
22.5.0.dev0
23.0.1 (2023-06-08)
-------------------
=========
Bug fixes
=========
* Fix assertion linting to not fail on byte suffixes by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#15873 <https://github.com/galaxyproject/galaxy/pull/15873>`_
* Fix ``get_test_from_anaconda()`` and ``base_image_for_targets()`` functions by `@nsoranzo <https://github.com/nsoranzo>`_ in `#16125 <https://github.com/galaxyproject/galaxy/pull/16125>`_
* Fix test search for mulled container hashes by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16170 <https://github.com/galaxyproject/galaxy/pull/16170>`_
============
Enhancements
============
* Allow setting auto_decompress property in staging interface by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16014 <https://github.com/galaxyproject/galaxy/pull/16014>`_
-------------------
22.1.5 (2022-11-14)
@@ -36,86 +55,86 @@ History
* Pin galaxy-util to >= 22.1
* Fix biocontainer resolution without beaker cache
--------------------
-------------------
22.1.1 (2022-08-22)
--------------------
-------------------
* First release from the 22.01 branch of Galaxy
---------------------
-------------------
21.9.2 (2021-11-23)
---------------------
-------------------
* Fix linting of ``multiple="true"`` select inputs.
---------------------
-------------------
21.9.1 (2021-11-03)
---------------------
-------------------
* Fix tool linting.
---------------------
-------------------
21.9.0 (2021-11-03)
---------------------
-------------------
* First release from the 21.09 branch of Galaxy.
---------------------
-------------------
21.1.2 (2021-06-23)
---------------------
-------------------
---------------------
-------------------
21.1.1 (2021-05-21)
---------------------
-------------------
---------------------
-------------------
21.1.0 (2021-03-19)
---------------------
-------------------
* First release from the 21.01 branch of Galaxy.
---------------------
-------------------
20.9.1 (2020-10-28)
---------------------
-------------------
* Bugfixes to work around & annotate expected tool test failures.
---------------------
-------------------
20.9.0 (2020-10-28)
---------------------
-------------------
* First release from the 20.09 branch of Galaxy.
--------------------------
------------------------
20.9.0.dev2 (2020-08-02)
--------------------------
------------------------
* First release from the 20.09 branch of Galaxy.
---------------------
-------------------
20.5.0 (2020-07-04)
---------------------
-------------------
* First release from the 20.05 branch of Galaxy.
---------------------
-------------------
20.1.0 (2020-07-04)
---------------------
-------------------
* First release from the 20.01 branch of Galaxy.
---------------------
-------------------
19.9.1 (2019-12-28)
---------------------
-------------------
* Fix declared dependency problem with package.
---------------------
-------------------
19.9.0 (2019-12-16)
---------------------
-------------------
* Initial import from dev branch of Galaxy during 19.09 development cycle.
packages/tool_util/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-tool-util
url = https://github.com/galaxyproject/galaxy
version = 22.5.0.dev0
version = 23.1.dev0
[options]
include_package_data = True
@@ -68,4 +68,4 @@ edam =
[options.packages.find]
exclude =
tests*
tests*
packages/tours/HISTORY.rst
+14 -3
View File
@@ -3,9 +3,20 @@ History
.. to_doc
--------------------------
---------
23.1.dev0
---------
-------------------
23.0.1 (2023-06-08)
-------------------
No recorded changes since last release
------------------------
22.9.0.dev0 (2022-06-24)
--------------------------
------------------------
* First release from the 22.09 branch of Galaxy.
packages/tours/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-tours
url = https://github.com/galaxyproject/galaxy
version = 22.5.0.dev0
version = 23.1.dev0
[options]
include_package_data = True
@@ -44,4 +44,4 @@ console_scripts =
[options.packages.find]
exclude =
tests*
tests*
packages/util/HISTORY.rst
+29 -17
View File
@@ -3,50 +3,62 @@ History
.. to_doc
---------------------
22.5.0.dev0
---------------------
---------
23.1.dev0
---------
---------------------
-------------------
23.0.1 (2023-06-08)
-------------------
=========
Bug fixes
=========
* Replace httpbin service with pytest-httpserver by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16042 <https://github.com/galaxyproject/galaxy/pull/16042>`_
-------------------
22.1.2 (2022-12-08)
---------------------
-------------------
* Pin packaging dependency to < 22, fixes ``LegacyVersion`` import errors
* Add missing pyparsing dependency
---------------------
-------------------
22.1.1 (2022-08-22)
---------------------
-------------------
* First release from the 22.01 branch of Galaxy
---------------------
-------------------
21.1.0 (2021-03-19)
---------------------
-------------------
* First release from the 21.01 branch of Galaxy.
---------------------
-------------------
20.9.1 (2020-10-28)
---------------------
-------------------
---------------------
-------------------
20.9.0 (2020-10-15)
---------------------
-------------------
* First release from the 20.09 branch of Galaxy.
---------------------
-------------------
20.5.0 (2020-07-03)
---------------------
-------------------
* First release from 20.05 branch of Galaxy.
---------------------
-------------------
19.9.0 (2019-11-21)
---------------------
-------------------
* Initial import from dev branch of Galaxy during 19.09 development cycle.
packages/util/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-util
url = https://github.com/galaxyproject/galaxy
version = 22.5.0.dev0
version = 23.1.dev0
[options]
include_package_data = True
@@ -55,4 +55,4 @@ template =
[options.packages.find]
exclude =
tests*
tests*
packages/web_framework/HISTORY.rst
+18 -7
View File
@@ -3,20 +3,31 @@ History
.. to_doc
---------------------
22.5.0.dev0
---------------------
---------
23.1.dev0
---------
---------------------
-------------------
23.0.1 (2023-06-08)
-------------------
=========
Bug fixes
=========
* Various fixes to path prefix handling by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16033 <https://github.com/galaxyproject/galaxy/pull/16033>`_
-------------------
20.9.0 (2020-10-15)
---------------------
-------------------
* First release from the 20.09 branch of Galaxy.
---------------------
-------------------
20.5.0 (2020-07-04)
---------------------
-------------------
* First release from the 20.05 branch of Galaxy.
packages/web_framework/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-web-framework
url = https://github.com/galaxyproject/galaxy
version = 22.5.0.dev0
version = 23.1.dev0
[options]
include_package_data = True
@@ -49,4 +49,4 @@ python_requires = >=3.7
[options.packages.find]
exclude =
tests*
tests*
packages/web_stack/HISTORY.rst
+11 -5
View File
@@ -3,14 +3,20 @@ History
.. to_doc
---------------------
22.5.0.dev0
---------------------
---------
23.1.dev0
---------
---------------------
-------------------
23.0.1 (2023-06-08)
-------------------
No recorded changes since last release
-------------------
20.5.0 (2020-07-04)
---------------------
-------------------
* First release from the 20.05 branch of Galaxy.
packages/web_stack/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-web-stack
url = https://github.com/galaxyproject/galaxy
version = 22.5.0.dev0
version = 23.1.dev0
[options]
include_package_data = True
@@ -39,4 +39,4 @@ python_requires = >=3.7
[options.packages.find]
exclude =
tests*
tests*
packages/webapps/HISTORY.rst
+19 -5
View File
@@ -3,14 +3,28 @@ History
.. to_doc
---------------------
22.5.0.dev0
---------------------
---------
23.1.dev0
---------
---------------------
-------------------
23.0.1 (2023-06-08)
-------------------
=========
Bug fixes
=========
* Display DCE in job parameter component, allow rerunning with DCE input by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15744 <https://github.com/galaxyproject/galaxy/pull/15744>`_
* Various fixes to path prefix handling by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16033 <https://github.com/galaxyproject/galaxy/pull/16033>`_
* Fix dataype_change not updating HDCA update_time by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16099 <https://github.com/galaxyproject/galaxy/pull/16099>`_
* Ignore invalid query params in display_by_username_and_slug by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16117 <https://github.com/galaxyproject/galaxy/pull/16117>`_
-------------------
20.5.0 (2020-07-04)
---------------------
-------------------
* First release from the 20.05 branch of Galaxy.
packages/webapps/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-webapps
url = https://github.com/galaxyproject/galaxy
version = 22.5.0.dev0
version = 23.1.dev0
[options]
include_package_data = True
@@ -74,4 +74,4 @@ python_requires = >=3.7
[options.packages.find]
exclude =
tests*
tool_shed.test*
tool_shed.test*