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Author SHA1 Message Date
Dannon Baker 02b99b7478 Vueuse major ver upgrade, updates 2023-10-22 13:26:22 -04:00
Dannon Baker 026e9b591f Sentry major version upgrade. 2023-10-22 13:26:22 -04:00
Dannon Baker a0d189d9e4 Remaining upgradeable devDependencies 2023-10-22 13:26:22 -04:00
Dannon Baker 38e09538ab Update atkionson-hyperlegible 2023-10-22 13:26:22 -04:00
Dannon Baker dc1cd67c94 One more bump to typescript-eslint 2023-10-22 13:26:22 -04:00
Dannon Baker e003451f39 Minor vue-test-utils bump 2023-10-22 13:26:22 -04:00
Dannon Baker b172c358a4 Drop sinon 2023-10-22 13:26:22 -04:00
Dannon Baker df78121239 Rename unused args in typescript 2023-10-22 13:26:22 -04:00
Dannon Baker 581179c722 Use state instead of this in workflowStepStore 2023-10-22 13:26:22 -04:00
Dannon Baker a1c1b331d4 Eslint configuration changes for 6+, amend no-unused-vars to be more 
strict and specifically check args, allowing unused pattern.
 2023-10-22 13:26:22 -04:00
Dannon Baker 0521056d42 Typescript-eslint upgrades. This flags a bunch of additional explicit any's that we need to go through and address. 2023-10-22 13:26:22 -04:00
Dannon Baker 01c9240dc4 Typescript upgrade 2023-10-22 13:26:22 -04:00
Dannon Baker 284284ecc3 Loader updates 2023-10-22 13:26:22 -04:00
Dannon Baker 4e7334d5e2 Fix loader compatibility 2023-10-22 13:26:22 -04:00
Dannon Baker 1456a01288 Webpack upgrades 2023-10-22 13:26:22 -04:00
Dannon Baker 0cc1b0f756 eslint dependency updates 2023-10-22 13:26:22 -04:00
Dannon Baker db6421288a Jest updates 2023-10-22 13:26:22 -04:00
Dannon Baker f3261f11ed Babel/polyfill version updates 2023-10-22 13:26:22 -04:00
Dannon Baker c74ff6ad1e Incremental dependency updates preparing for vue3 2023-10-22 13:26:22 -04:00
Nuwan Goonasekera f9cecae62e Merge pull request #16497 from uwwint/refactor/oidc-custos 
Refactor/OIDC custos
 2023-10-21 19:33:17 +05:30
Nicola Soranzo 84a07d7833 Merge pull request #16896 from galaxybot/dev_auto_update_dependencies 
Update Python dependencies
 2023-10-21 11:39:41 +01:00
galaxybot 7f57ed0b98 Update Python dependencies 2023-10-21 03:13:39 +00:00
Uwe Winter 0ae47b7dba Refactoring of the whole OIDC code: move IDP specifics to subclass, create factory, build cache 2023-10-21 01:30:59 +05:30
Martin Cech fabc125ea2 Merge pull request #15000 from dannon/toolshed-bundles 
Toolshed client build separation
 2023-10-20 19:32:24 +02:00
Dannon 6954aa1252 Merge pull request #16758 from assuntad23/16556/time-wf-invoked 
WF Report Enhancement: Converting ISO to UTC for Invocation Date/Time
 2023-10-20 11:06:22 -04:00
Marius van den Beek cdcadb1357 Merge pull request #16737 from hexylena/minerva-fixes 
MINERVA display application: enable cors, add for tabular
 2023-10-20 16:12:23 +02:00
Marius van den Beek eecaeb7fad Merge pull request #15313 from pcm32/patch-14 
Update cellxgene interactive tool to 1.1.1
 2023-10-20 15:48:14 +02:00
John Chilton 96aa7b400a Merge pull request #16872 from ahmedhamidawan/restore_old_tools_api_route 
Restore ToolsApi and create new api route for new panel structure
 2023-10-20 09:36:18 -04:00
Marius van den Beek 8bac65faaa Merge pull request #16825 from nsoranzo/toolshed_wf_fixes 
Tool Shed 2.0 fixes
 2023-10-20 15:33:30 +02:00
Marius van den Beek ce7b2edec9 Merge pull request #16891 from lldelisle/patch-2 
Update help in relabel_from_file.xml
 2023-10-20 14:23:38 +02:00
Dannon 4e13b2d925 Merge pull request #16830 from guerler/replace_modal 
Use vue modal instead of global backbone modal in user preferences
 2023-10-20 07:48:49 -04:00
Lucille Delisle 5de6d40f73 Update relabel_from_file.xml 2023-10-20 13:48:34 +02:00
Nicola Soranzo 048d79242f Configure temporary whoosh_index_dir for tests 
Otherwise a `<GALAXY_ROOT>/database/toolshed_whoosh_indexes` would
be reused, leading to failing tests when running tests locally.
 2023-10-20 12:04:59 +01:00
Nicola Soranzo bdcc33195a Remove unused test config option 2023-10-20 12:04:58 +01:00
Nicola Soranzo e340895134 Type annotation fixes 2023-10-20 12:04:58 +01:00
Nicola Soranzo bab9753aeb Fix another typo 
Introduced in commit 68831ddcfc .
 2023-10-20 12:04:58 +01:00
Nicola Soranzo b5013aa57a Fix another typo 
Introduced in commit 70c7f03be9 .
 2023-10-20 12:04:57 +01:00
Nicola Soranzo e5bec6ad71 Fix typo in query 
Introduced in commit 3238b21280 .
 2023-10-20 12:04:57 +01:00
Nicola Soranzo 806dfae4b3 Fix index_repositories() method 
Broken in commit 77df9c9a73 .
 2023-10-20 12:04:56 +01:00
Nicola Soranzo 4e7763d846 Add type annotations. Drop unused functions and re-exports. 2023-10-20 11:14:31 +01:00
Nicola Soranzo b85f2f10fa Fix get_users_with_repo_alert() call 
Introduced in commit 1711e96dac .
 2023-10-20 11:14:31 +01:00
Nicola Soranzo 14e3ae32ed Restore GET /api/categories/<encoded_id> in ToolShed 2.0 
and the deleted field in the response.

Rationale: it is not particularly useful, but both:
GET /api/categories
GET /api/categories/<encoded_id>/repositories
work on TS 2.0, so it's weird that this one is missing.

Also, it was breaking BioBlend's
https://bioblend.readthedocs.io/en/latest/api_docs/toolshed/all.html#bioblend.toolshed.categories.ToolShedCategoryClient.show_category
 2023-10-20 11:14:30 +01:00
Nicola Soranzo bbb239a76b Install node from setup-node action 2023-10-20 11:14:30 +01:00
Nicola Soranzo 219bd20320 Fix imports 
Broken in commit 3238b21280 .
 2023-10-20 11:14:29 +01:00
Nicola Soranzo ed0c72e3c4 Make owner and name parameters of `get_or_create_repository()` not optional 2023-10-20 11:14:29 +01:00
Nicola Soranzo b1d86d4bad Check that TOOL_SHED_TEST_BROWSER is a valid value 2023-10-20 11:14:28 +01:00
Nicola Soranzo 7dc9be43bf Explicitly add playwright to dev dependencies 2023-10-20 11:14:28 +01:00
Nicola Soranzo 9a5a552ca7 Fix issues reported by `yarn build` 
Introduced in https://github.com/galaxyproject/galaxy/pull/16787 .
 2023-10-20 11:14:27 +01:00
Nicola Soranzo 60aca1657d Expand `run:` values to multiple lines 2023-10-20 11:14:27 +01:00
Nicola Soranzo 72629a4f8e Expand matrix to test all combinations on Python 3.7 and 3.11 2023-10-20 11:14:26 +01:00