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Commit Graph
1936 Commits
Author SHA1 Message Date
pauldg e2882dc54c Changes to tests according to ro-crate 
metadata changes
 2023-03-29 11:32:34 +02:00
davelopez 5a3ee67fa0 More ID encoding handling fixes in libraries 2023-03-29 08:55:53 +01:00
Martin Cech 39c63687b7 merge release_23.0 into dev 2023-03-22 16:33:29 -04:00
mvdbeek d7b173f004 Add selenium test for showing outpu type info 2023-03-21 12:36:03 -04:00
John Chilton 6c2a0116ea this drop down doesn't exist anymore... 2023-03-20 09:05:36 -04:00
mvdbeek 6afcbe29c3 Display confirmation dialog when attepmting to save workflow with invalid connections 
Closes https://github.com/galaxyproject/galaxy/issues/15753
 2023-03-17 20:29:10 +01:00
Dannon 2fc6752b65 Merge pull request #15720 from ahmedhamidawan/related_filter_selenium_test 
Add selenium test for history Related filter
 2023-03-15 17:30:17 -04:00
John Chilton f39c39a3b1 Merge pull request #15786 from ahmedhamidawan/related_filter_refactor 
Add API test and refactor code for related:hid history filter
 2023-03-14 15:42:17 -04:00
Ahmed Awan 7e11c57bd7 move type checking back to parse_query_filters_with_relations 2023-03-14 11:25:31 -04:00
Ahmed Awan 84405e102a Remove waits from related-hid filter api test, lint fixes 2023-03-13 17:30:40 -04:00
Ahmed Awan b72486f033 Add backend test for related:hid filter 2023-03-13 17:03:13 -04:00
John Chilton 3ed291f076 object store selection test 2023-03-13 15:32:32 -04:00
Nate Coraor 0ac48236df Merge remote-tracking branch 'upstream/release_23.0' into dev 2023-03-10 09:11:54 -05:00
davelopez 3f10b58ba9 Fix update of celery_conf for launch_gravity too 2023-03-10 13:15:24 +01:00
davelopez 01d3365b7f Fix Celery configuration for integration tests 
I think the intent was to have both `broker_url` and `result_backend` setup here. The previous code was setting just `result_backend` and leaving the rest as default.
 2023-03-10 13:15:14 +01:00
Ahmed Awan e9ceffe73e related_filter_selenium: remove sleep and wait_for_absent instead 2023-03-07 09:32:58 -05:00
Ahmed Awan 52bb4f9398 related_filter_selenium: Add UX_TRANSITION sleep for filter changes to load 2023-03-07 08:23:15 -05:00
Ahmed Awan 952d29d88d Add selenium test for history Related filter 2023-03-06 18:27:40 -05:00
John Chilton 262d4f42dd Swap /api/object_store -> /api/object_stores 2023-03-06 11:08:30 -05:00
Nicola Soranzo 44e8a31394 Merge pull request #15691 from dannon/fix-hid-assertion 
Update selenium hid text assertion
 2023-03-03 17:11:13 +00:00
Marius van den Beek 5798d756bf Merge pull request #14073 from jmchilton/object_store_ui 
Empower Users to Select Storage Destination
 2023-03-03 14:03:07 +01:00
Dannon Baker 575afab8fa Update selenium hid text assertion 2023-03-03 07:58:44 -05:00
Dannon 84cb89055e Merge pull request #15662 from dannon/minor-hid-tweak 
Minor hid display tweak
 2023-03-02 08:48:24 -05:00
Dannon Baker cb9b5404a5 Merge remote-tracking branch 'upstream/release_23.0' into dev 2023-03-02 08:38:35 -05:00
mvdbeek 32abd51dcb Test anon can preview workflow 2023-03-01 17:13:48 +01:00
Dannon Baker 79de6f4e43 Update selenium and jest tests for new hid display format 2023-02-28 21:58:19 -05:00
mvdbeek 77ad3537e2 Merge branch 'release_23.0' into dev 2023-02-27 10:08:39 +01:00
John Chilton f84508f303 Merge pull request #15649 from mvdbeek/fix_subworkflow_conditional_save 
[23.0] Fix saving workflow with conditional subworkflow step
 2023-02-25 11:36:52 -05:00
mvdbeek 0b98e13452 Fix saving of subworkflows with when connected 
Fixes https://github.com/galaxyproject/galaxy/issues/15646.
 2023-02-24 19:54:47 +01:00
Nicola Soranzo d1f4d14126 Fix bioblend `GalaxyClient` import for mypy 
Fix the following error in the test_galaxy_packages tests:

```
mypy .
galaxy_test/base/populators.py:73: error: Module "bioblend.galaxy" does not
explicitly export attribute "GalaxyClient"  [attr-defined]
    from bioblend.galaxy import GalaxyClient
    ^
Found 1 error in 1 file (checked 20 source files)
```
 2023-02-23 14:15:30 +00:00
John Chilton cf4950fd31 Merge pull request #15510 from davelopez/explore_tool_remote_test_data 
Explore tool remote test data
 2023-02-22 10:58:54 -05:00
John Chilton c692ad8292 Merge pull request #15497 from usegalaxy-au/unified-filesources 
Unify url handling with filesources
 2023-02-22 10:07:19 -05:00
John Chilton 03cfc7768f test case for object store selection with doubly nested workflow output 2023-02-21 14:19:00 -05:00
John Chilton 1c6f9d0b4d nested workflow tests for this intermediate/output objectstore selection 2023-02-21 14:18:59 -05:00
John Chilton 46b6d85c67 implement preferred object store id 2023-02-21 14:18:58 -05:00
John Chilton 478583486e Improved error message in api_asserts. 2023-02-21 14:18:57 -05:00
John Chilton f7a4992b4b Implement quota tracking options per ObjectStore. 2023-02-19 10:33:21 -05:00
John Chilton e2530b46a9 private objectstores & dataset.sharable 
Setup abstractions to prevent sharing transient or private per-user objects in an objectstore.
 2023-02-19 10:33:20 -05:00
davelopez 9f11dd3016 Add RemoteLocationDataResolver for test data 2023-02-16 14:46:50 +01:00
mvdbeek 8e56325e90 Merge branch 'release_23.0' into dev 2023-02-15 17:01:23 +01:00
mvdbeek 091f0fb1d6 Merge branch 'release_22.05' into release_23.0 2023-02-15 16:14:30 +01:00
mvdbeek 2699f8c741 Fix unbound local error in sort collection tool 
Fixes
```
UnboundLocalError: local variable 'sorted_elements' referenced before assignment
  File "galaxy/tools/__init__.py", line 1909, in handle_single_execution
    rval = self.execute(
  File "galaxy/tools/__init__.py", line 2005, in execute
    return self.tool_action.execute(
  File "galaxy/tools/actions/model_operations.py", line 83, in execute
    self._produce_outputs(
  File "galaxy/tools/actions/model_operations.py", line 108, in _produce_outputs
    tool.produce_outputs(
  File "galaxy/tools/__init__.py", line 3490, in produce_outputs
    for dce in sorted_elements:
```
in https://sentry.galaxyproject.org/share/issue/264aea1fd3994e5ba67ab80fcbd2c577/
 2023-02-15 12:30:53 +01:00
nuwang 0c0ed2a4e3 Fix test failures 2023-02-09 18:14:18 +05:30
davelopez ecdc31b52e Add basic selenium test for shared histories 2023-02-09 09:11:25 +01:00
Dannon Baker 6baae3411b Merge remote-tracking branch 'upstream/release_23.0' into dev 2023-02-08 11:56:49 -05:00
Dannon Baker 5ac7306c91 Merge remote-tracking branch 'upstream/release_22.05' into release_23.0 2023-02-08 11:56:34 -05:00
mvdbeek 2d63389e72 Add test that verifies visible doesn't revert on job finish 
It isn't exactly a regression test, for that you'd have to time the test
so that we change the visible attribute while the job is finishing.  I
think this test here is worth running independently, and I don't think
we have an explicit test like that.
 2023-02-08 11:56:00 +01:00
Marius van den Beek 6145fcb336 Merge pull request #15431 from assuntad23/15146/edit-collection-edit-info-message 
[23.0] Clarify info messages for Collection Edit tabs
 2023-02-08 10:08:00 +01:00
Dannon Baker f071762034 Formatting after apply suggestions... 2023-02-07 21:55:18 -05:00
DannonandMarius van den Beek a0d18b599f Apply suggestions from code review 
Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com>
 2023-02-07 21:53:31 -05:00