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Merge branch 'release_22.05' into release_23.0
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@@ -3459,7 +3459,7 @@ class SortTool(DatabaseOperationTool):
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sorttype = incoming["sort_type"]["sort_type"]
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new_elements = {}
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elements = hdca.collection.elements
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presort_elements = []
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presort_elements = None
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if sorttype == "alpha":
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presort_elements = [(dce.element_identifier, dce) for dce in elements]
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elif sorttype == "numeric":
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@@ -3484,7 +3484,7 @@ class SortTool(DatabaseOperationTool):
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else:
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raise Exception(f"Unknown sort_type '{sorttype}'")
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if presort_elements:
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if presort_elements is not None:
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sorted_elements = [x[1] for x in sorted(presort_elements, key=lambda x: x[0])]
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for dce in sorted_elements:
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@@ -6108,6 +6108,44 @@ input:
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put_response = self._update_workflow(workflow_id, workflow_object)
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assert put_response.status_code == 200
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def test_empty_collection_sort(self, history_id):
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self._run_workflow(
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"""class: GalaxyWorkflow
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inputs:
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input: collection
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filter_file: data
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steps:
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filter_collection:
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tool_id: __FILTER_FROM_FILE__
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in:
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input: input
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how|filter_source: filter_file
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sort_collection_1:
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tool_id: __SORTLIST__
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in:
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input: filter_collection/output_filtered
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sort_collection_2:
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tool_id: __SORTLIST__
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in:
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input: filter_collection/output_discarded
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merge_collection:
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tool_id: __MERGE_COLLECTION__
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in:
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inputs_0|input: sort_collection_1/output
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inputs_1|input: sort_collection_2/output
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test_data:
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input:
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collection_type: list
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elements:
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- identifier: i1
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content: "0"
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filter_file: i1
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""",
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history_id=history_id,
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wait=True,
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assert_ok=True,
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)
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@skip_without_tool("random_lines1")
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def test_run_replace_params_over_default_delayed(self):
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with self.dataset_populator.test_history() as history_id:
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