From f191197a7bc0fd4ac55525928aeaad037b06cc6e Mon Sep 17 00:00:00 2001 From: mvdbeek Date: Thu, 10 Jun 2021 16:09:33 +0200 Subject: [PATCH] Add new PRs to notes --- doc/source/releases/21.05.rst | 87 +++++++++++++++++++++++++++++++ doc/source/releases/21.05_prs.rst | 46 ++++++++++++++++ 2 files changed, 133 insertions(+) diff --git a/doc/source/releases/21.05.rst b/doc/source/releases/21.05.rst index 7240a2b75a6..81bbcbec6f9 100644 --- a/doc/source/releases/21.05.rst +++ b/doc/source/releases/21.05.rst @@ -188,6 +188,14 @@ Enhancements `Pull Request 11753`_ .. enhancement +* Include more info on test input staging exception + `Pull Request 11953`_ +* Add indexes on update_time columns used in ORDER BY clauses + `Pull Request 11988`_ +* Don't assert output_metadata state + `Pull Request 12100`_ +* Fix and enhance subworkflow step upgrade messages + `Pull Request 12120`_ * Performance testing infrastructure. `Pull Request 10117`_ * Stub MQ docs @@ -539,6 +547,8 @@ Fixes `Pull Request 11913`_ .. bug_tag_tools +* Open input file in read mode in liftover wrapper + `Pull Request 12001`_ * Resolve session problems, enabled pages and tags fastAPI routes `Pull Request 11342`_ * Make filter work with file containing header @@ -546,6 +556,8 @@ Fixes `Pull Request 11365`_ .. bug_tag_workflows +* Allow trs_version to refer to name or id field + `Pull Request 12021`_ * Workflow editor null/zero fixes `Pull Request 11265`_ * Fix reconnecting terminals @@ -567,6 +579,9 @@ Fixes `Pull Request 11778`_ .. bug_tag_ui +* fix undefined error in ui-file-source + (thanks to `@OlegZharkov `__). + `Pull Request 11586`_ * Remove filter from list:paired element names when filter is not _1 `Pull Request 11486`_ * Beta history current history mismatch with legacy code. @@ -575,6 +590,19 @@ Fixes `Pull Request 11879`_ .. bug_tag_jobs +* ITs on K8S tweaks and SSL + (thanks to `@almahmoud `__). + `Pull Request 11947`_ +* Fix anonymous user job walltime query + `Pull Request 11951`_ +* Fix container port parsing if IPv6 hostname is ``::`` + `Pull Request 11955`_ +* Fix isolated job home dir on pulsar + `Pull Request 12037`_ +* Don't start workflow scheduler for handler in job pool + `Pull Request 12075`_ +* Fix set metadata for primary discovered outputs + `Pull Request 12088`_ * Fix mule job messaging `Pull Request 11148`_ * Deal with empty claim names in k8s runner @@ -612,6 +640,65 @@ Fixes `Pull Request 11633`_ .. bug +* Create history_audit table to avoid write deadlocks during history.update_time updates + `Pull Request 11914`_ +* Fix `GET /api/datasets/` docs + (thanks to `@nsoranzo `__). + `Pull Request 11933`_ +* Don't move the `update_time` goalpost + (thanks to `@nsoranzo `__). + `Pull Request 11934`_ +* Force galaxy_id to string in galactic_job_json + (thanks to `@simonbray `__). + `Pull Request 11965`_ +* Update default base images, make DEFAULT_CHANNELS configurable via env var + `Pull Request 11966`_ +* Fix mulled singularity building + `Pull Request 11979`_ +* restrict invalid input in library pagination + (thanks to `@OlegZharkov `__). + `Pull Request 11996`_ +* Fix breadcrumb in dataset details in libraries + (thanks to `@OlegZharkov `__). + `Pull Request 11998`_ +* Fix deleted libs for user + (thanks to `@OlegZharkov `__). + `Pull Request 12011`_ +* fix library dataset permissions + (thanks to `@OlegZharkov `__). + `Pull Request 12015`_ +* Disable import button during "Import to History" + (thanks to `@OlegZharkov `__). + `Pull Request 12016`_ +* Hide edit libraries for users + (thanks to `@OlegZharkov `__). + `Pull Request 12023`_ +* Fix downloading (sub)folders from data-libraries + (thanks to `@OlegZharkov `__). + `Pull Request 12028`_ +* Fix subworkflow / update all steps upgrade action + `Pull Request 12029`_ +* Fix uploading multiple files in ftp upload / choose remote files + `Pull Request 12030`_ +* add GALAXY_MEMORY_MB* to passt hrough + (thanks to `@bgruening `__). + `Pull Request 12039`_ +* invocation_time report fix + `Pull Request 12070`_ +* Fix edit field reactivity in libraries + (thanks to `@OlegZharkov `__). + `Pull Request 12080`_ +* Fix select all in import from history backbone modal + (thanks to `@OlegZharkov `__). + `Pull Request 12082`_ +* Fix export select_all in collections + (thanks to `@OlegZharkov `__). + `Pull Request 12086`_ +* fix library search filter + (thanks to `@OlegZharkov `__). + `Pull Request 12087`_ +* Fix name of datasets with invalid contents + `Pull Request 12107`_ * Beta History: implement missing advanced search filters `Pull Request 10972`_ * Fix mypy error with Union in response_model diff --git a/doc/source/releases/21.05_prs.rst b/doc/source/releases/21.05_prs.rst index 52657e8df23..dd73e92f568 100644 --- a/doc/source/releases/21.05_prs.rst +++ b/doc/source/releases/21.05_prs.rst @@ -1,5 +1,51 @@ .. github_links +.. _Pull Request 11586: https://github.com/galaxyproject/galaxy/pull/11586 +.. _Pull Request 11742: https://github.com/galaxyproject/galaxy/pull/11742 +.. _Pull Request 11914: https://github.com/galaxyproject/galaxy/pull/11914 +.. _Pull Request 11933: https://github.com/galaxyproject/galaxy/pull/11933 +.. _Pull Request 11934: https://github.com/galaxyproject/galaxy/pull/11934 +.. _Pull Request 11936: https://github.com/galaxyproject/galaxy/pull/11936 +.. _Pull Request 11946: https://github.com/galaxyproject/galaxy/pull/11946 +.. _Pull Request 11947: https://github.com/galaxyproject/galaxy/pull/11947 +.. _Pull Request 11950: https://github.com/galaxyproject/galaxy/pull/11950 +.. _Pull Request 11951: https://github.com/galaxyproject/galaxy/pull/11951 +.. _Pull Request 11953: https://github.com/galaxyproject/galaxy/pull/11953 +.. _Pull Request 11955: https://github.com/galaxyproject/galaxy/pull/11955 +.. _Pull Request 11963: https://github.com/galaxyproject/galaxy/pull/11963 +.. _Pull Request 11965: https://github.com/galaxyproject/galaxy/pull/11965 +.. _Pull Request 11966: https://github.com/galaxyproject/galaxy/pull/11966 +.. _Pull Request 11973: https://github.com/galaxyproject/galaxy/pull/11973 +.. _Pull Request 11979: https://github.com/galaxyproject/galaxy/pull/11979 +.. _Pull Request 11988: https://github.com/galaxyproject/galaxy/pull/11988 +.. _Pull Request 11991: https://github.com/galaxyproject/galaxy/pull/11991 +.. _Pull Request 11996: https://github.com/galaxyproject/galaxy/pull/11996 +.. _Pull Request 11998: https://github.com/galaxyproject/galaxy/pull/11998 +.. _Pull Request 12001: https://github.com/galaxyproject/galaxy/pull/12001 +.. _Pull Request 12011: https://github.com/galaxyproject/galaxy/pull/12011 +.. _Pull Request 12015: https://github.com/galaxyproject/galaxy/pull/12015 +.. _Pull Request 12016: https://github.com/galaxyproject/galaxy/pull/12016 +.. _Pull Request 12020: https://github.com/galaxyproject/galaxy/pull/12020 +.. _Pull Request 12021: https://github.com/galaxyproject/galaxy/pull/12021 +.. _Pull Request 12023: https://github.com/galaxyproject/galaxy/pull/12023 +.. _Pull Request 12028: https://github.com/galaxyproject/galaxy/pull/12028 +.. _Pull Request 12029: https://github.com/galaxyproject/galaxy/pull/12029 +.. _Pull Request 12030: https://github.com/galaxyproject/galaxy/pull/12030 +.. _Pull Request 12037: https://github.com/galaxyproject/galaxy/pull/12037 +.. _Pull Request 12039: https://github.com/galaxyproject/galaxy/pull/12039 +.. _Pull Request 12070: https://github.com/galaxyproject/galaxy/pull/12070 +.. _Pull Request 12075: https://github.com/galaxyproject/galaxy/pull/12075 +.. _Pull Request 12079: https://github.com/galaxyproject/galaxy/pull/12079 +.. _Pull Request 12080: https://github.com/galaxyproject/galaxy/pull/12080 +.. _Pull Request 12082: https://github.com/galaxyproject/galaxy/pull/12082 +.. _Pull Request 12086: https://github.com/galaxyproject/galaxy/pull/12086 +.. _Pull Request 12087: https://github.com/galaxyproject/galaxy/pull/12087 +.. _Pull Request 12088: https://github.com/galaxyproject/galaxy/pull/12088 +.. _Pull Request 12096: https://github.com/galaxyproject/galaxy/pull/12096 +.. _Pull Request 12100: https://github.com/galaxyproject/galaxy/pull/12100 +.. _Pull Request 12107: https://github.com/galaxyproject/galaxy/pull/12107 +.. _Pull Request 12112: https://github.com/galaxyproject/galaxy/pull/12112 +.. _Pull Request 12120: https://github.com/galaxyproject/galaxy/pull/12120 .. _Pull Request 9807: https://github.com/galaxyproject/galaxy/pull/9807 .. _Pull Request 10117: https://github.com/galaxyproject/galaxy/pull/10117 .. _Pull Request 10222: https://github.com/galaxyproject/galaxy/pull/10222