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Merge pull request #1004 from jj-umn/uniprotxml_datatype

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UniProtXML datatype
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John Chilton
2015-11-18 13:47:27 -05:00
parent 7fef50f45f 2a7bba5aba
commit e4e44be27b
2 changed files with 8 additions and 0 deletions
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config/datatypes_conf.xml.sample
+2
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@@ -172,6 +172,7 @@
<datatype extension="traml" type="galaxy.datatypes.proteomics:TraML" mimetype="application/xml" display_in_upload="true" />
<datatype extension="featurexml" type="galaxy.datatypes.proteomics:FeatureXML" mimetype="application/xml" display_in_upload="true" />
<datatype extension="consensusxml" type="galaxy.datatypes.proteomics:ConsensusXML" mimetype="application/xml" display_in_upload="true" />
<datatype extension="uniprotxml" type="galaxy.datatypes.proteomics:UniProtXML" mimetype="application/xml" display_in_upload="true" />
<datatype extension="msp" type="galaxy.datatypes.proteomics:Msp" display_in_upload="true" />
<datatype extension="splib_noindex" type="galaxy.datatypes.proteomics:SPLibNoIndex" display_in_upload="true" />
<datatype extension="splib" type="galaxy.datatypes.proteomics:SPLib" display_in_upload="true" />
@@ -459,6 +460,7 @@
<sniffer type="galaxy.datatypes.proteomics:TraML"/>
<sniffer type="galaxy.datatypes.proteomics:MzIdentML"/>
<sniffer type="galaxy.datatypes.proteomics:MzQuantML"/>
<sniffer type="galaxy.datatypes.proteomics:UniProtXML"/>
<sniffer type="galaxy.datatypes.proteomics:Msp"/>
<sniffer type="galaxy.datatypes.proteomics:SPLib"/>
<sniffer type="galaxy.datatypes.proteomics:ThermoRAW"/>
lib/galaxy/datatypes/proteomics.py
+6
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@@ -193,6 +193,12 @@ class TandemXML(ProteomicsXml):
root = "bioml"
class UniProtXML(ProteomicsXml):
file_ext = "uniprotxml"
blurb = "UniProt Proteome file"
root = "uniprot"
class Mgf(Text):
"""Mascot Generic Format data"""
file_ext = "mgf"