From d46171ea21ca3874897c9f25d041163b252ff899 Mon Sep 17 00:00:00 2001 From: Guruprasad Anada Date: Thu, 15 Jan 2009 10:42:22 -0500 Subject: [PATCH] Fixed a bug in microsatellite mutability tool. --- tools/regVariation/microsats_mutability.py | 10 ---------- 1 file changed, 10 deletions(-) diff --git a/tools/regVariation/microsats_mutability.py b/tools/regVariation/microsats_mutability.py index 1261dbbba73..c4f66368b79 100644 --- a/tools/regVariation/microsats_mutability.py +++ b/tools/regVariation/microsats_mutability.py @@ -409,19 +409,9 @@ def main(): blk=0 win=0 linestr="" - ff=open("junkmabc","w") if region == 'win': - """ - sorted_infile = tempfile.NamedTemporaryFile() - if winspecies == 1: - cmdline = "sort -n -k 3"+" -o "+sorted_infile.name+" "+infile - elif winspecies == 2: - cmdline = "sort -n -k 10"+" -o "+sorted_infile.name+" "+infile - os.system(cmdline) - print >>ff, "Finished sorting" - """ msats = NiceReaderWrapper( fileinput.FileInput( infile ), chrom_col = speciesind, start_col = speciesind+1,