diff --git a/lib/galaxy_test/selenium/test_workflow_editor.py b/lib/galaxy_test/selenium/test_workflow_editor.py index 2ce6a32142a..aa6b9209f63 100644 --- a/lib/galaxy_test/selenium/test_workflow_editor.py +++ b/lib/galaxy_test/selenium/test_workflow_editor.py @@ -646,7 +646,7 @@ steps: inputs: [] steps: - tool_id: multiple_versions - tool_version: 0.1 + tool_version: "0.1" label: multiple_versions state: foo: bar @@ -780,7 +780,7 @@ inputs: [] steps: - tool_id: create_2 label: create_2 - outputs: + out: out_file1: change_datatype: bam - tool_id: metadata_bam @@ -807,7 +807,7 @@ steps: steps: - tool_id: create_2 label: create_2 - outputs: + out: out_file1: change_datatype: bam outputs: @@ -906,7 +906,7 @@ inputs: collection_type: "list" steps: - tool_id: multiple_versions - tool_version: 0.1 + tool_version: "0.1" label: multiple_versions state: foo: bar diff --git a/lib/galaxy_test/workflow/map_over_expression.gxwf.yml b/lib/galaxy_test/workflow/map_over_expression.gxwf.yml index c361b223202..14319d86020 100644 --- a/lib/galaxy_test/workflow/map_over_expression.gxwf.yml +++ b/lib/galaxy_test/workflow/map_over_expression.gxwf.yml @@ -13,6 +13,3 @@ steps: tool_id: validation_default in: input1: param_out/text_param - outputs: - out_file1: - rename: "replaced_param_collection" diff --git a/lib/galaxy_test/workflow/optional_param_default_value.gxwf.yml b/lib/galaxy_test/workflow/optional_param_default_value.gxwf.yml index c2d70a4a012..d25392f4412 100644 --- a/lib/galaxy_test/workflow/optional_param_default_value.gxwf.yml +++ b/lib/galaxy_test/workflow/optional_param_default_value.gxwf.yml @@ -19,6 +19,6 @@ steps: in: input1: source: required_input - outputs: + out: out_file1: rename: "prefix_${optional_text}_suffix" diff --git a/lib/galaxy_test/workflow/rename_based_on_input_collection.gxwf.yml b/lib/galaxy_test/workflow/rename_based_on_input_collection.gxwf.yml index 0d6a19abfdd..688acbfb5eb 100644 --- a/lib/galaxy_test/workflow/rename_based_on_input_collection.gxwf.yml +++ b/lib/galaxy_test/workflow/rename_based_on_input_collection.gxwf.yml @@ -15,6 +15,6 @@ steps: $link: fastq_inputs reference: $link: fasta_input - outputs: + out: out_file1: rename: "#{fastq_input.fastq_input1 | basename} suffix" diff --git a/lib/galaxy_test/workflow/replacement_parameters_legacy.gxwf.yml b/lib/galaxy_test/workflow/replacement_parameters_legacy.gxwf.yml index 834721c3cc2..62d62c82a48 100644 --- a/lib/galaxy_test/workflow/replacement_parameters_legacy.gxwf.yml +++ b/lib/galaxy_test/workflow/replacement_parameters_legacy.gxwf.yml @@ -10,7 +10,7 @@ steps: tool_id: create_2 state: sleep_time: 0 - outputs: + out: out_file1: rename: "${replaceme} name" out_file2: diff --git a/lib/galaxy_test/workflow/replacement_parameters_nested.gxwf.yml b/lib/galaxy_test/workflow/replacement_parameters_nested.gxwf.yml index d783195ae58..28b39090617 100644 --- a/lib/galaxy_test/workflow/replacement_parameters_nested.gxwf.yml +++ b/lib/galaxy_test/workflow/replacement_parameters_nested.gxwf.yml @@ -22,7 +22,7 @@ steps: tool_id: create_2 state: sleep_time: 0 - outputs: + out: out_file1: rename: "${replacemeinner} name" out_file2: diff --git a/lib/galaxy_test/workflow/replacement_parameters_text.gxwf.yml b/lib/galaxy_test/workflow/replacement_parameters_text.gxwf.yml index 18f73aadb69..b57393613b2 100644 --- a/lib/galaxy_test/workflow/replacement_parameters_text.gxwf.yml +++ b/lib/galaxy_test/workflow/replacement_parameters_text.gxwf.yml @@ -11,7 +11,7 @@ steps: tool_id: create_2 state: sleep_time: 0 - outputs: + out: out_file1: rename: "${replaceme} name" out_file2: diff --git a/test/integration/test_workflow_refactoring.py b/test/integration/test_workflow_refactoring.py index b3633228f20..8b626ab22e7 100644 --- a/test/integration/test_workflow_refactoring.py +++ b/test/integration/test_workflow_refactoring.py @@ -444,7 +444,7 @@ steps: tool_id: cat in: input1: test_input - outputs: + out: out_file1: rename: "${pja_only_param} name" """) @@ -465,7 +465,7 @@ steps: tool_id: cat in: input1: test_input - outputs: + out: out_file1: rename: "${pja_only_param} name" """) @@ -489,7 +489,7 @@ steps: tool_id: cat in: input1: test_input - outputs: + out: out_file1: rename: "${pja_only_param} name" """)