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Specify profile and look for exit codes for genomespace tool -- warnings cause failures otherwise

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Dannon Baker
2019-04-09 13:34:06 -04:00
parent adfb7e65b3
commit c521decf32
1 changed files with 2 additions and 2 deletions
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tools/genomespace/genomespace_exporter.xml
+2 -2
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@@ -1,5 +1,5 @@
<?xml version="1.0"?>
<tool name="GenomeSpace Exporter" id="genomespace_exporter" require_login="True" version="0.0.6">
<tool name="GenomeSpace Exporter" id="genomespace_exporter" require_login="True" version="0.0.7" profile="16.04">
<description> - send data to GenomeSpace</description>
<environment_variables>
<environment_variable name="GS_TOKEN">
@@ -8,7 +8,7 @@
$token
</environment_variable>
</environment_variables>
<command>python $__tool_directory__/genomespace_exporter.py
<command detect_errors="exit_code">python $__tool_directory__/genomespace_exporter.py
#set $target_folder = $genomespace_browser.split('^')[0]
#assert $target_folder, Exception('You must select a valid target folder.')