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Add some more missing quotes to command line.

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Ross Lazarus
2012-06-08 08:28:35 +10:00
parent 9fbf7007c7
commit c14fcf5ea0
1 changed files with 1 additions and 1 deletions
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tools/rgenetics/rgFastQC.xml
+1 -1
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@@ -1,7 +1,7 @@
<tool name="Fastqc: Fastqc QC" id="fastqc" version="0.5">
<description>using FastQC from Babraham</description>
<command interpreter="python">
rgFastQC.py -i $input_file -d $html_file.files_path -o $html_file -n "$out_prefix" -f $input_file.ext -j $input_file.name -e ${GALAXY_DATA_INDEX_DIR}/shared/jars/FastQC/fastqc
rgFastQC.py -i "$input_file" -d "$html_file.files_path" -o "$html_file" -n "$out_prefix" -f "$input_file.ext" -j "$input_file.name" -e "${GALAXY_DATA_INDEX_DIR}/shared/jars/FastQC/fastqc"
#if $contaminants.dataset and str($contaminants) > ''
-c "$contaminants"
#end if