mirror of
https://github.com/galaxyproject/galaxy.git
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Merge branch 'revise_visit_000' into dev
This commit is contained in:
Dannon Baker
@@ -122,7 +122,10 @@ define([ 'utils/utils' ], function( Utils ) {
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/** Matches a new tool model to the current input elements e.g. used to update dynamic options
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*/
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matchModel: function( model, callback ) {
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return matchIds( model.inputs, this.flat_dict, callback );
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var self = this;
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visitInputs( model.inputs, function( input, name ) {
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self.flat_dict[ name ] && callback ( input, self.flat_dict[ name ] );
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});
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},
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/** Matches identifier from api response to input elements e.g. used to display validation errors
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@@ -191,66 +194,50 @@ define([ 'utils/utils' ], function( Utils ) {
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return -1;
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};
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/** Match context
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* @param{dict} inputs - Dictionary of input elements
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* @param{dict} key - Reference key which is matched to an input name e.g. data_ref
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* @param{dict} callback - Called with matched context i.e. callback( input, referenced_input )
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*/
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var matchContext = function( inputs, key, callback, context ) {
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context = $.extend( true, {}, context );
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_.each( inputs, function ( input ) {
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input && input.type && ( context[ input.name ] = input );
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});
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_.each( inputs, function ( input ) {
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if ( _.isObject( input ) ) {
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if ( input.type && context[ input[ key ] ] ) {
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callback ( input, context[ input[ key ] ] );
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} else {
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matchContext( input, key, callback, context );
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}
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}
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});
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};
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/** Matches a tool model to a dictionary, indexed with flat ids
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* @param{dict} inputs - Dictionary of input elements
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* @param{dict} mapping - Dictionary containing flat ids
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/** Visits tool inputs
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* @param{dict} inputs - Nested dictionary of input elements
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* @param{dict} callback - Called with the mapped dictionary object and corresponding model node
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*/
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var matchIds = function( inputs, mapping, callback ) {
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var result = {};
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var self = this;
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function search ( id, head ) {
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for ( var i in head ) {
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var node = head[ i ];
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var index = node.name;
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id != '' && ( index = id + '|' + index );
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switch ( node.type ) {
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case 'repeat':
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for ( var j in node.cache ) {
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search ( index + '_' + j, node.cache[ j ] );
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var visitInputs = function( inputs, callback, prefix, context ) {
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context = $.extend( true, {}, context );
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_.each( inputs, function ( input ) {
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if ( input && input.type && input.name ) {
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context[ input.name ] = input;
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}
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});
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for ( var i in inputs ) {
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var node = inputs[ i ];
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var name = prefix ? prefix + '|' + node.name : node.name;
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switch ( node.type ) {
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case 'repeat':
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_.each( node.cache, function( cache, j ) {
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visitInputs( cache, callback, name + '_' + j, context );
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});
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break;
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case 'conditional':
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if ( node.test_param ) {
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callback( node.test_param, name + '|' + node.test_param.name, context );
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var selectedCase = matchCase( node, node.test_param.value );
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if ( selectedCase != -1 ) {
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visitInputs( node.cases[ selectedCase ].inputs, callback, name, context );
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} else {
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Galaxy.emit.debug( 'form-data::visitInputs() - Invalid case for ' + name + '.' );
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}
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break;
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case 'conditional':
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var selectedCase = matchCase( node, node.test_param && node.test_param.value );
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selectedCase != -1 && search ( index, node.cases[ selectedCase ].inputs );
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break;
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case 'section':
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search ( index, node.inputs );
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break;
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default:
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var mapped = mapping[ index ];
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mapped && callback( mapped, node );
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}
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} else {
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Galaxy.emit.debug( 'form-data::visitInputs() - Conditional test parameter missing for ' + name + '.' );
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}
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break;
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case 'section':
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visitInputs( node.inputs, callback, name, context )
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break;
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default:
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callback( node, name, context );
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}
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}
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search( '', inputs );
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return result;
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};
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return {
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Manager : Manager,
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matchIds : matchIds,
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matchContext : matchContext
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visitInputs : visitInputs
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}
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});
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@@ -18,7 +18,7 @@ define(['utils/utils', 'mvc/ui/ui-portlet', 'mvc/ui/ui-misc', 'mvc/form/form-sec
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/** Update available options */
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update: function(new_model){
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var self = this;
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this.data.matchModel(new_model, function(input_id, node) {
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this.data.matchModel(new_model, function(node, input_id) {
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var input = self.input_list[input_id];
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if (input && input.options) {
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if (!_.isEqual(input.options, node.options)) {
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@@ -105,7 +105,7 @@ define(['utils/utils', 'utils/deferred', 'mvc/ui/ui-misc', 'mvc/form/form-view',
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large : true
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})).$el);
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} else {
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Galaxy.modal.show({
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Galaxy.modal && Galaxy.modal.show({
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title : 'Tool request failed',
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body : error_message,
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buttons : {
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@@ -1 +1 @@
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|
||||
define(["utils/utils"],function(){var a=Backbone.Model.extend({initialize:function(a){this.app=a},checksum:function(){var a="",b=this;return this.app.section.$el.find(".section-row").each(function(){var c=$(this).attr("id"),d=b.app.field_list[c];d&&(a+=c+":"+JSON.stringify(d.value&&d.value())+":"+d.collapsed+";")}),a},create:function(){function a(a,b,c){d.flat_dict[a]=b,f[a]=c,d.app.element_list[b]&&d.app.element_list[b].$el.attr("tour_id",a)}function c(e,f){for(var g in f){var h=f[g];if(h.input){var i=h.input,j=e;switch(""!=e&&(j+="|"),j+=i.name,i.type){case"repeat":var k="section-",l=[],m=null;for(var n in h){var o=n.indexOf(k);-1!=o&&(o+=k.length,l.push(parseInt(n.substr(o))),m||(m=n.substr(0,o)))}l.sort(function(a,b){return a-b});var g=0;for(var p in l)c(j+"_"+g++,h[m+l[p]]);break;case"conditional":var q=d.app.field_list[i.id].value();a(j+"|"+i.test_param.name,i.id,q);var r=b(i,q);-1!=r&&c(j,f[i.id+"-section-"+r]);break;case"section":c(!i.flat&&j||"",h);break;default:var s=d.app.field_list[i.id];if(s&&s.value){var q=s.value();if((void 0===i.ignore||i.ignore!=q)&&(s.collapsed&&i.collapsible_value&&(q=i.collapsible_value),a(j,i.id,q),i.payload))for(var t in i.payload)a(t,i.id,i.payload[t])}}}}}var d=this,e={};this._iterate(this.app.section.$el,e);var f={};return this.flat_dict={},c("",e),f},match:function(a){return this.flat_dict&&this.flat_dict[a]},matchCase:function(a,c){return b(a,c)},matchModel:function(a,b){return d(a.inputs,this.flat_dict,b)},matchResponse:function(a){function b(a,e){if("string"==typeof e){var f=d.flat_dict[a];f&&(c[f]=e)}else for(var g in e){var h=g;if(""!==a){var i="|";e instanceof Array&&(i="_"),h=a+i+h}b(h,e[g])}}var c={},d=this;return b("",a),c},_iterate:function(a,b){var c=this,d=$(a).children();d.each(function(){var a=this,d=$(a).attr("id");if($(a).hasClass("section-row")){var e=c.app.input_list[d];b[d]=e&&{input:e}||{},c._iterate(a,b[d])}else c._iterate(a,b)})}}),b=function(a,b){"boolean"==a.test_param.type&&(b="true"==b?a.test_param.truevalue||"true":a.test_param.falsevalue||"false");for(var c in a.cases)if(a.cases[c].value==b)return c;return-1},c=function(a,b,d,e){e=$.extend(!0,{},e),_.each(a,function(a){a&&a.type&&(e[a.name]=a)}),_.each(a,function(a){_.isObject(a)&&(a.type&&e[a[b]]?d(a,e[a[b]]):c(a,b,d,e))})},d=function(a,c,d){function e(a,f){for(var g in f){var h=f[g],i=h.name;switch(""!=a&&(i=a+"|"+i),h.type){case"repeat":for(var j in h.cache)e(i+"_"+j,h.cache[j]);break;case"conditional":var k=b(h,h.test_param&&h.test_param.value);-1!=k&&e(i,h.cases[k].inputs);break;case"section":e(i,h.inputs);break;default:var l=c[i];l&&d(l,h)}}}var f={};return e("",a),f};return{Manager:a,matchIds:d,matchContext:c}});
|
||||
define(["utils/utils"],function(){var a=Backbone.Model.extend({initialize:function(a){this.app=a},checksum:function(){var a="",b=this;return this.app.section.$el.find(".section-row").each(function(){var c=$(this).attr("id"),d=b.app.field_list[c];d&&(a+=c+":"+JSON.stringify(d.value&&d.value())+":"+d.collapsed+";")}),a},create:function(){function a(a,b,c){d.flat_dict[a]=b,f[a]=c,d.app.element_list[b]&&d.app.element_list[b].$el.attr("tour_id",a)}function c(e,f){for(var g in f){var h=f[g];if(h.input){var i=h.input,j=e;switch(""!=e&&(j+="|"),j+=i.name,i.type){case"repeat":var k="section-",l=[],m=null;for(var n in h){var o=n.indexOf(k);-1!=o&&(o+=k.length,l.push(parseInt(n.substr(o))),m||(m=n.substr(0,o)))}l.sort(function(a,b){return a-b});var g=0;for(var p in l)c(j+"_"+g++,h[m+l[p]]);break;case"conditional":var q=d.app.field_list[i.id].value();a(j+"|"+i.test_param.name,i.id,q);var r=b(i,q);-1!=r&&c(j,f[i.id+"-section-"+r]);break;case"section":c(!i.flat&&j||"",h);break;default:var s=d.app.field_list[i.id];if(s&&s.value){var q=s.value();if((void 0===i.ignore||i.ignore!=q)&&(s.collapsed&&i.collapsible_value&&(q=i.collapsible_value),a(j,i.id,q),i.payload))for(var t in i.payload)a(t,i.id,i.payload[t])}}}}}var d=this,e={};this._iterate(this.app.section.$el,e);var f={};return this.flat_dict={},c("",e),f},match:function(a){return this.flat_dict&&this.flat_dict[a]},matchCase:function(a,c){return b(a,c)},matchModel:function(a,b){var d=this;c(a.inputs,function(a,c){d.flat_dict[c]&&b(a,d.flat_dict[c])})},matchResponse:function(a){function b(a,e){if("string"==typeof e){var f=d.flat_dict[a];f&&(c[f]=e)}else for(var g in e){var h=g;if(""!==a){var i="|";e instanceof Array&&(i="_"),h=a+i+h}b(h,e[g])}}var c={},d=this;return b("",a),c},_iterate:function(a,b){var c=this,d=$(a).children();d.each(function(){var a=this,d=$(a).attr("id");if($(a).hasClass("section-row")){var e=c.app.input_list[d];b[d]=e&&{input:e}||{},c._iterate(a,b[d])}else c._iterate(a,b)})}}),b=function(a,b){"boolean"==a.test_param.type&&(b="true"==b?a.test_param.truevalue||"true":a.test_param.falsevalue||"false");for(var c in a.cases)if(a.cases[c].value==b)return c;return-1},c=function(a,d,e,f){f=$.extend(!0,{},f),_.each(a,function(a){a&&a.type&&a.name&&(f[a.name]=a)});for(var g in a){var h=a[g],i=e?e+"|"+h.name:h.name;switch(h.type){case"repeat":_.each(h.cache,function(a,b){c(a,d,i+"_"+b,f)});break;case"conditional":if(h.test_param){d(h.test_param,i+"|"+h.test_param.name,f);var j=b(h,h.test_param.value);-1!=j?c(h.cases[j].inputs,d,i,f):Galaxy.emit.debug("form-data::visitInputs() - Invalid case for "+i+".")}else Galaxy.emit.debug("form-data::visitInputs() - Conditional test parameter missing for "+i+".");break;case"section":c(h.inputs,d,i,f);break;default:d(h,i,f)}}};return{Manager:a,visitInputs:c}});
|
||||
//# sourceMappingURL=../../../maps/mvc/form/form-data.js.map
|
||||
@@ -1,2 +1,2 @@
|
||||
define(["utils/utils","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/form/form-section","mvc/form/form-data"],function(a,b,c,d,e){return Backbone.View.extend({initialize:function(b){this.options=a.merge(b,{initial_errors:!1,cls:"ui-portlet-limited",icon:""}),this.modal=parent.Galaxy&&parent.Galaxy.modal||new c.Modal.View,this.setElement("<div/>"),this.render()},update:function(a){var b=this;this.data.matchModel(a,function(a,c){var d=b.input_list[a];if(d&&d.options&&!_.isEqual(d.options,c.options)){d.options=c.options;var e=b.field_list[a];if(e.update){var f=[];if(-1!=["data","data_collection","drill_down"].indexOf(d.type))f=d.options;else for(var g in c.options){var h=c.options[g];h.length>2&&f.push({label:h[0],value:h[1]})}e.update(f),e.trigger("change"),Galaxy.emit.debug("form-view::update()","Updating options for "+a)}}})},wait:function(a){for(var b in this.input_list){var c=this.field_list[b],d=this.input_list[b];d.is_dynamic&&c.wait&&c.unwait&&(a?c.wait():c.unwait())}},highlight:function(a,b,c){var d=this.element_list[a];if(d&&(d.error(b||"Please verify this parameter."),this.trigger("expand",a),!c))if(self==top){var e=this.$el.parents().filter(function(){return"auto"==$(this).css("overflow")}).first();e.animate({scrollTop:e.scrollTop()+d.$el.offset().top-50},500)}else $("html, body").animate({scrollTop:d.$el.offset().top-20},500)},errors:function(a){if(this.trigger("reset"),a&&a.errors){var b=this.data.matchResponse(a.errors);for(var c in this.element_list){{this.element_list[c]}b[c]&&this.highlight(c,b[c],!0)}}},render:function(){var a=this;this.off("change"),this.off("reset"),this.field_list={},this.input_list={},this.element_list={},this.data=new e.Manager(this),this._renderForm(),this.data.create(),this.options.initial_errors&&this.errors(this.options);var b=this.data.checksum();return this.on("change",function(){var c=a.data.checksum();c!=b&&(b=c,a.options.onchange&&a.options.onchange())}),this.on("reset",function(){for(var a in this.element_list)this.element_list[a].reset()}),this},_renderForm:function(){this.message=new c.Message,this.section=new d.View(this,{inputs:this.options.inputs}),$(".tooltip").remove(),this.portlet=new b.View({icon:this.options.icon,title:this.options.title,cls:this.options.cls,operations:this.options.operations,buttons:this.options.buttons,collapsible:this.options.collapsible,collapsed:this.options.collapsed}),this.portlet.append(this.message.$el),this.portlet.append(this.section.$el),this.$el.empty(),this.$el.append(this.portlet.$el),this.options.message&&this.message.update({persistent:!0,status:"warning",message:this.options.message}),Galaxy.emit.debug("form-view::initialize()","Completed")}})});
|
||||
define(["utils/utils","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/form/form-section","mvc/form/form-data"],function(a,b,c,d,e){return Backbone.View.extend({initialize:function(b){this.options=a.merge(b,{initial_errors:!1,cls:"ui-portlet-limited",icon:""}),this.modal=parent.Galaxy&&parent.Galaxy.modal||new c.Modal.View,this.setElement("<div/>"),this.render()},update:function(a){var b=this;this.data.matchModel(a,function(a,c){var d=b.input_list[c];if(d&&d.options&&!_.isEqual(d.options,a.options)){d.options=a.options;var e=b.field_list[c];if(e.update){var f=[];if(-1!=["data","data_collection","drill_down"].indexOf(d.type))f=d.options;else for(var g in a.options){var h=a.options[g];h.length>2&&f.push({label:h[0],value:h[1]})}e.update(f),e.trigger("change"),Galaxy.emit.debug("form-view::update()","Updating options for "+c)}}})},wait:function(a){for(var b in this.input_list){var c=this.field_list[b],d=this.input_list[b];d.is_dynamic&&c.wait&&c.unwait&&(a?c.wait():c.unwait())}},highlight:function(a,b,c){var d=this.element_list[a];if(d&&(d.error(b||"Please verify this parameter."),this.trigger("expand",a),!c))if(self==top){var e=this.$el.parents().filter(function(){return"auto"==$(this).css("overflow")}).first();e.animate({scrollTop:e.scrollTop()+d.$el.offset().top-50},500)}else $("html, body").animate({scrollTop:d.$el.offset().top-20},500)},errors:function(a){if(this.trigger("reset"),a&&a.errors){var b=this.data.matchResponse(a.errors);for(var c in this.element_list){{this.element_list[c]}b[c]&&this.highlight(c,b[c],!0)}}},render:function(){var a=this;this.off("change"),this.off("reset"),this.field_list={},this.input_list={},this.element_list={},this.data=new e.Manager(this),this._renderForm(),this.data.create(),this.options.initial_errors&&this.errors(this.options);var b=this.data.checksum();return this.on("change",function(){var c=a.data.checksum();c!=b&&(b=c,a.options.onchange&&a.options.onchange())}),this.on("reset",function(){for(var a in this.element_list)this.element_list[a].reset()}),this},_renderForm:function(){this.message=new c.Message,this.section=new d.View(this,{inputs:this.options.inputs}),$(".tooltip").remove(),this.portlet=new b.View({icon:this.options.icon,title:this.options.title,cls:this.options.cls,operations:this.options.operations,buttons:this.options.buttons,collapsible:this.options.collapsible,collapsed:this.options.collapsed}),this.portlet.append(this.message.$el),this.portlet.append(this.section.$el),this.$el.empty(),this.$el.append(this.portlet.$el),this.options.message&&this.message.update({persistent:!0,status:"warning",message:this.options.message}),Galaxy.emit.debug("form-view::initialize()","Completed")}})});
|
||||
//# sourceMappingURL=../../../maps/mvc/form/form-view.js.map
|
||||
File diff suppressed because one or more lines are too long
@@ -22,10 +22,10 @@ define([
|
||||
window.Galaxy.currHistoryPanel = { model: new Backbone.Model() };
|
||||
window.Galaxy.emit = {
|
||||
debug : function(){},
|
||||
error : function(){}
|
||||
error : function( v ){ window.console.error( v ) }
|
||||
};
|
||||
window.fakeserver = sinon.fakeServer.create();
|
||||
window.WAIT_FADE_FAST = 300;
|
||||
window.fakeserver = sinon.fakeServer.create();
|
||||
for (var route in serverdata) {
|
||||
window.fakeserver.respondWith('GET', Galaxy.root + route, [ 200, { 'Content-Type': 'application/json' }, serverdata[ route ].data ]);
|
||||
}
|
||||
|
||||
@@ -5,6 +5,9 @@ return {
|
||||
},
|
||||
'api/datatypes': {
|
||||
data: '["RData", "ab1", "affybatch", "txt"]'
|
||||
},
|
||||
'api/tools/test/build': {
|
||||
data: '{ "id": "test", "name": "_name", "version": "_version", "description": "_description", "display": "true", "inputs": [ { "name": "a", "type": "text" }, { "name": "b", "type": "conditional", "test_param": { "name": "c", "type": "select", "value": "h" }, "cases": [ { "name": "d", "value": "d", "inputs": [ { "name": "f", "type": "text" }, { "name": "g", "type": "text" } ] }, { "name": "h", "value": "h", "inputs": [ { "name": "i", "type": "text" }, { "name": "j", "type": "text" } ] } ] }, { "name": "k", "type": "repeat", "cache": [[ { "name": "l", "type": "text" }, { "name": "m", "type": "conditional", "test_param": { "name": "n", "type": "select", "value": "o" }, "cases": [ { "name": "o", "value": "o", "inputs": [ { "name": "p", "type": "text" }, { "name": "q", "type": "text" } ] }, { "name": "r", "value": "r", "inputs": [ { "name": "s", "type": "text" }, { "name": "t", "type": "text" } ] } ] } ] ] } ] }'
|
||||
}
|
||||
}
|
||||
});
|
||||
});
|
||||
@@ -1,6 +1,6 @@
|
||||
/* global define, QUnit, module, test, ok, equal, deepEqual, notEqual */
|
||||
define([ 'test-app', 'mvc/form/form-input', 'mvc/ui/ui-misc',
|
||||
], function( testApp, InputElement, Ui ){
|
||||
define([ 'test-app', 'mvc/form/form-input', 'mvc/ui/ui-misc', 'mvc/form/form-data', 'mvc/tool/tool-form', 'utils/utils',
|
||||
], function( testApp, InputElement, Ui, FormData, ToolForm, Utils ){
|
||||
'use strict';
|
||||
module( 'Form test', {
|
||||
setup: function() {
|
||||
@@ -11,6 +11,31 @@ define([ 'test-app', 'mvc/form/form-input', 'mvc/ui/ui-misc',
|
||||
}
|
||||
} );
|
||||
|
||||
test( 'tool-form', function() {
|
||||
var form = new ToolForm.View( { id: 'test' } );
|
||||
$( 'body' ).prepend( form.$el );
|
||||
window.fakeserver.respond();
|
||||
ok( form.$( '.portlet-title-text' ).html() == '<b>_name</b> _description (Galaxy Version _version)', 'Title correct' );
|
||||
var tour_ids = [];
|
||||
$( '[tour_id]' ).each( function() { tour_ids.push( $( this ).attr( 'tour_id' ) ) } );
|
||||
ok( JSON.stringify( tour_ids ) == '["a","b|c"]', 'Tour ids correct' );
|
||||
ok( JSON.stringify( form.data.create() ) == '{"a":"","b|c":null}', 'Created data correct' );
|
||||
var mapped_ids = [];
|
||||
form.data.matchModel( form.options, function( input, id ) { mapped_ids.push( $( '#' + id ).find( '[tour_id]' ).first().attr( 'tour_id' ) ) } );
|
||||
ok( JSON.stringify( mapped_ids ) == '["a","b|c"]', 'Remapped tour ids correct' );
|
||||
});
|
||||
|
||||
test( 'data', function() {
|
||||
var visits = [];
|
||||
Utils.get( { url: Galaxy.root + 'api/tools/test/build', success: function( response ) {
|
||||
FormData.visitInputs( response.inputs, function( node, name, context ) {
|
||||
visits.push( { name: name, node: node } );
|
||||
} );
|
||||
} } );
|
||||
window.fakeserver.respond();
|
||||
ok( JSON.stringify( visits ) == '[{"name":"a","node":{"name":"a","type":"text"}},{"name":"b|c","node":{"name":"c","type":"select","value":"h"}},{"name":"b|i","node":{"name":"i","type":"text"}},{"name":"b|j","node":{"name":"j","type":"text"}},{"name":"k_0|l","node":{"name":"l","type":"text"}},{"name":"k_0|m|n","node":{"name":"n","type":"select","value":"o"}},{"name":"k_0|m|p","node":{"name":"p","type":"text"}},{"name":"k_0|m|q","node":{"name":"q","type":"text"}}]', 'Testing value visitor' );
|
||||
});
|
||||
|
||||
test( 'input', function() {
|
||||
var input = new InputElement( {}, {
|
||||
field: new Ui.Input({})
|
||||
|
||||
@@ -4,7 +4,6 @@
|
||||
<html>
|
||||
<head>
|
||||
<link href="../../../static/style/blue/base.css" media="screen" rel="stylesheet" type="text/css">
|
||||
<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.1/css/font-awesome.min.css">
|
||||
<script data-main="../test-common" src="../scripts/libs/require.js"></script>
|
||||
</head>
|
||||
<body>
|
||||
|
||||
Reference in New Issue
Block a user