From 99693306e6c41aa011c559e98b137c67c92f0255 Mon Sep 17 00:00:00 2001 From: guerler Date: Mon, 9 May 2016 14:52:23 -0400 Subject: [PATCH] Revise form data visitor --- client/galaxy/scripts/mvc/form/form-data.js | 93 ++++++++----------- client/galaxy/scripts/mvc/form/form-view.js | 2 +- .../galaxy/scripts/mvc/tool/tool-form-base.js | 2 +- static/maps/mvc/form/form-data.js.map | 2 +- static/maps/mvc/form/form-view.js.map | 2 +- static/maps/mvc/tool/tool-form-base.js.map | 2 +- static/scripts/bundled/analysis.bundled.js | 10 +- .../scripts/bundled/analysis.bundled.js.map | 2 +- static/scripts/bundled/libs.bundled.js.map | 2 +- static/scripts/mvc/form/form-data.js | 2 +- static/scripts/mvc/form/form-view.js | 2 +- static/scripts/mvc/tool/tool-form-base.js | 2 +- test/qunit/test-app.js | 4 +- test/qunit/test-data/fakeserver.js | 5 +- test/qunit/tests/form_tests.js | 29 +++++- test/qunit/tests/ui_tests.html | 1 - 16 files changed, 88 insertions(+), 74 deletions(-) diff --git a/client/galaxy/scripts/mvc/form/form-data.js b/client/galaxy/scripts/mvc/form/form-data.js index b284c55600e..98338d73512 100644 --- a/client/galaxy/scripts/mvc/form/form-data.js +++ b/client/galaxy/scripts/mvc/form/form-data.js @@ -122,7 +122,10 @@ define([ 'utils/utils' ], function( Utils ) { /** Matches a new tool model to the current input elements e.g. used to update dynamic options */ matchModel: function( model, callback ) { - return matchIds( model.inputs, this.flat_dict, callback ); + var self = this; + visitInputs( model.inputs, function( input, name ) { + self.flat_dict[ name ] && callback ( input, self.flat_dict[ name ] ); + }); }, /** Matches identifier from api response to input elements e.g. used to display validation errors @@ -191,66 +194,50 @@ define([ 'utils/utils' ], function( Utils ) { return -1; }; - /** Match context - * @param{dict} inputs - Dictionary of input elements - * @param{dict} key - Reference key which is matched to an input name e.g. data_ref - * @param{dict} callback - Called with matched context i.e. callback( input, referenced_input ) - */ - var matchContext = function( inputs, key, callback, context ) { - context = $.extend( true, {}, context ); - _.each( inputs, function ( input ) { - input && input.type && ( context[ input.name ] = input ); - }); - _.each( inputs, function ( input ) { - if ( _.isObject( input ) ) { - if ( input.type && context[ input[ key ] ] ) { - callback ( input, context[ input[ key ] ] ); - } else { - matchContext( input, key, callback, context ); - } - } - }); - }; - - /** Matches a tool model to a dictionary, indexed with flat ids - * @param{dict} inputs - Dictionary of input elements - * @param{dict} mapping - Dictionary containing flat ids + /** Visits tool inputs + * @param{dict} inputs - Nested dictionary of input elements * @param{dict} callback - Called with the mapped dictionary object and corresponding model node */ - var matchIds = function( inputs, mapping, callback ) { - var result = {}; - var self = this; - function search ( id, head ) { - for ( var i in head ) { - var node = head[ i ]; - var index = node.name; - id != '' && ( index = id + '|' + index ); - switch ( node.type ) { - case 'repeat': - for ( var j in node.cache ) { - search ( index + '_' + j, node.cache[ j ] ); + var visitInputs = function( inputs, callback, prefix, context ) { + context = $.extend( true, {}, context ); + _.each( inputs, function ( input ) { + if ( input && input.type && input.name ) { + context[ input.name ] = input; + } + }); + for ( var i in inputs ) { + var node = inputs[ i ]; + var name = prefix ? prefix + '|' + node.name : node.name; + switch ( node.type ) { + case 'repeat': + _.each( node.cache, function( cache, j ) { + visitInputs( cache, callback, name + '_' + j, context ); + }); + break; + case 'conditional': + if ( node.test_param ) { + callback( node.test_param, name + '|' + node.test_param.name, context ); + var selectedCase = matchCase( node, node.test_param.value ); + if ( selectedCase != -1 ) { + visitInputs( node.cases[ selectedCase ].inputs, callback, name, context ); + } else { + Galaxy.emit.debug( 'form-data::visitInputs() - Invalid case for ' + name + '.' ); } - break; - case 'conditional': - var selectedCase = matchCase( node, node.test_param && node.test_param.value ); - selectedCase != -1 && search ( index, node.cases[ selectedCase ].inputs ); - break; - case 'section': - search ( index, node.inputs ); - break; - default: - var mapped = mapping[ index ]; - mapped && callback( mapped, node ); - } + } else { + Galaxy.emit.debug( 'form-data::visitInputs() - Conditional test parameter missing for ' + name + '.' ); + } + break; + case 'section': + visitInputs( node.inputs, callback, name, context ) + break; + default: + callback( node, name, context ); } } - search( '', inputs ); - return result; }; return { Manager : Manager, - matchIds : matchIds, - matchContext : matchContext + visitInputs : visitInputs } }); \ No newline at end of file diff --git a/client/galaxy/scripts/mvc/form/form-view.js b/client/galaxy/scripts/mvc/form/form-view.js index ff3dc579df4..1acea228c2e 100644 --- a/client/galaxy/scripts/mvc/form/form-view.js +++ b/client/galaxy/scripts/mvc/form/form-view.js @@ -18,7 +18,7 @@ define(['utils/utils', 'mvc/ui/ui-portlet', 'mvc/ui/ui-misc', 'mvc/form/form-sec /** Update available options */ update: function(new_model){ var self = this; - this.data.matchModel(new_model, function(input_id, node) { + this.data.matchModel(new_model, function(node, input_id) { var input = self.input_list[input_id]; if (input && input.options) { if (!_.isEqual(input.options, node.options)) { diff --git a/client/galaxy/scripts/mvc/tool/tool-form-base.js b/client/galaxy/scripts/mvc/tool/tool-form-base.js index 64995275d24..26c29c35f00 100644 --- a/client/galaxy/scripts/mvc/tool/tool-form-base.js +++ b/client/galaxy/scripts/mvc/tool/tool-form-base.js @@ -105,7 +105,7 @@ define(['utils/utils', 'utils/deferred', 'mvc/ui/ui-misc', 'mvc/form/form-view', large : true })).$el); } else { - Galaxy.modal.show({ + Galaxy.modal && Galaxy.modal.show({ title : 'Tool request failed', body : error_message, buttons : { diff --git a/static/maps/mvc/form/form-data.js.map b/static/maps/mvc/form/form-data.js.map index 12eef3ad23a..6d41599fc7b 100644 --- a/static/maps/mvc/form/form-data.js.map +++ b/static/maps/mvc/form/form-data.js.map @@ -1 +1 @@ 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'}});return{View:e}}.apply(e,n),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(1))},function(t,e,i){var n,s;n=[],s=function(){"use strict";var t={UPLOAD:"upload",QUEUED:"queued",RUNNING:"running",SETTING_METADATA:"setting_metadata",NEW:"new",EMPTY:"empty",OK:"ok",PAUSED:"paused",FAILED_METADATA:"failed_metadata",NOT_VIEWABLE:"noPermission",DISCARDED:"discarded",ERROR:"error"};return t.READY_STATES=[t.OK,t.EMPTY,t.PAUSED,t.FAILED_METADATA,t.NOT_VIEWABLE,t.DISCARDED,t.ERROR],t.NOT_READY_STATES=[t.UPLOAD,t.QUEUED,t.RUNNING,t.SETTING_METADATA,t.NEW],t}.apply(e,n),!(void 0!==s&&(t.exports=s))},,function(t,e,i){var n,s;(function(o,a,r){n=[i(8),i(25),i(15)],s=function(t,e,i){var n=o.Model.extend({}),s=o.Model.extend({defaults:{id:"",type:"",name:"",hda_ldda:"hda",metadata:null},initialize:function(){this.get("metadata")||this._set_metadata(),this.on("change",this._set_metadata,this)},_set_metadata:function(){var t=new n;a.each(a.keys(this.attributes),function(e){if(0===e.indexOf("metadata_")){var i=e.split("metadata_")[1];t.set(i,this.attributes[e]),delete this.attributes[e]}},this),this.set("metadata",t,{silent:!0})},get_metadata:function(t){return this.attributes.metadata.get(t)},urlRoot:Galaxy.root+"api/datasets"}),l=s.extend({defaults:a.extend({},s.prototype.defaults,{chunk_url:null,first_data_chunk:null,chunk_index:-1,at_eof:!1}),initialize:function(t){s.prototype.initialize.call(this),this.attributes.chunk_index=this.attributes.first_data_chunk?1:0,this.attributes.chunk_url=Galaxy.root+"dataset/display?dataset_id="+this.id,this.attributes.url_viz=Galaxy.root+"visualization"},get_next_chunk:function(){if(this.attributes.at_eof)return null;var t=this,e=r.Deferred();return r.getJSON(this.attributes.chunk_url,{chunk:t.attributes.chunk_index++}).success(function(i){var n;""!==i.ck_data?n=i:(t.attributes.at_eof=!0,n=null),e.resolve(n)}),e}}),c=o.Collection.extend({model:s}),d=o.View.extend({initialize:function(t){this.row_count=0,this.loading_chunk=!1,new p({model:t.model,$el:this.$el})},expand_to_container:function(){this.$el.height()").attr("id","loading_indicator"),this.$el.append(this.loading_indicator);var t=r("").attr({id:"content_table",cellpadding:0});this.$el.append(t);var e=this.model.get_metadata("column_names"),i=r("").appendTo(t),n=r("").appendTo(i);if(e)n.append("");else for(var s=1;s<=this.model.get_metadata("columns");s++)n.append("");var o=this,a=this.model.get("first_data_chunk");a?this._renderChunk(a):r.when(o.model.get_next_chunk()).then(function(t){o._renderChunk(t)}),this.scroll_elt.scroll(function(){o.attempt_to_fetch()})},scrolled_to_bottom:function(){return!1},_renderCell:function(t,e,i){var n=r("");e.append(t),this.row.append(e)},appendHeader:function(){this.$thead.append(this.row),this.row=a("")},add:function(t,e,i){var n=a("");e&&n.css("width",e),i&&n.css("text-align",i),n.append(t),this.row.append(n)},append:function(t,e){this._commit(t,e,!1)},prepend:function(t,e){this._commit(t,e,!0)},get:function(t){return this.$el.find("#"+t)},del:function(t){var e=this.$tbody.find("#"+t);e.length>0&&(e.remove(),this.row_count--,this._refresh())},delAll:function(){this.$tbody.empty(),this.row_count=0,this._refresh()},value:function(t){this.before=this.$tbody.find(".current").attr("id"),void 0!==t&&(this.$tbody.find("tr").removeClass("current"),t&&this.$tbody.find("#"+t).addClass("current"));var e=this.$tbody.find(".current").attr("id");return void 0===e?null:(e!=this.before&&this.options.onchange&&this.options.onchange(t),e)},size:function(){return this.$tbody.find("tr").length},_commit:function(t,e,i){this.del(t),this.row.attr("id",t),i?this.$tbody.prepend(this.row):this.$tbody.append(this.row),e&&(this.row.hide(),this.row.fadeIn()),this.row=this._row(),this.row_count++,this._refresh()},_row:function(){return a('')},_onclick:function(t){var e=this.value(),i=a(t.target).closest("tr").attr("id");""!=i&&i&&e!=i&&(this.options.onconfirm?this.options.onconfirm(i):this.value(i))},_ondblclick:function(t){var e=this.value();e&&this.options.ondblclick&&this.options.ondblclick(e)},_refresh:function(){0==this.row_count?this.$tmessage.show():this.$tmessage.hide()},_template:function(t){return'
"+e.join("")+""+s+"").text(t),s=this.model.get_metadata("column_types");return void 0!==i?n.attr("colspan",i).addClass("stringalign"):s&&e"),n=this.model.get_metadata("columns");return this.row_count%2!==0&&i.addClass("dark_row"),e.length===n?a.each(e,function(t,e){i.append(this._renderCell(t,e))},this):e.length>n?(a.each(e.slice(0,n-1),function(t,e){i.append(this._renderCell(t,e))},this),i.append(this._renderCell(e.slice(n-1).join(" "),n-1))):n>5&&e.length===n-1?(a.each(e,function(t,e){i.append(this._renderCell(t,e))},this),i.append(r(""))):i.append(this._renderCell(t,0,n)),this.row_count++,i},_renderChunk:function(t){var e=this.$el.find("table");a.each(t.ck_data.split("\n"),function(t,i){""!==t&&e.append(this._renderRow(t))},this)}}),h=d.extend({initialize:function(t){d.prototype.initialize.call(this,t),scroll_elt=a.find(this.$el.parents(),function(t){return"auto"===r(t).css("overflow")}),scroll_elt||(scroll_elt=window),this.scroll_elt=r(scroll_elt)},scrolled_to_bottom:function(){return this.$el.height()-this.scroll_elt.scrollTop()-this.scroll_elt.height()<=0}}),u=d.extend({initialize:function(t){d.prototype.initialize.call(this,t),this.scroll_elt=this.$el.css({position:"relative",overflow:"scroll",height:t.height||"500px"})},scrolled_to_bottom:function(){return this.$el.scrollTop()+this.$el.innerHeight()>=this.el.scrollHeight}}),p=o.View.extend({col:{chrom:null,start:null,end:null},url_viz:null,dataset_id:null,genome_build:null,file_ext:null,initialize:function(t){function e(t,e){for(var i=0;i';return t.icon&&(e+=' '),e+=''+t.title+""}}),i=e.extend({initialize:function(t){e.prototype.initialize.call(this,t)},_template:function(t){return''}}),n=o.View.extend({initialize:function(e){this.options=t.merge(e,{title:"Select/Unselect all",icons:["fa fa-square-o","fa fa-minus-square-o","fa fa-check-square-o"],value:0}),this.setElement(this._template()),this.$title=this.$(".title"),this.$icon=this.$(".icon"),this.value(this.options.value),this.$title.html(this.options.title);var i=this;this.$el.on("click",function(){i.current=0===i.current&&2||0,i.value(i.current),i.options.onclick&&i.options.onclick()})},value:function(t,e){return void 0!==t&&(e&&0!==t&&(t=t!==e&&1||2),this.current=t,this.$icon.removeClass().addClass("icon").addClass(this.options.icons[t]),this.options.onchange&&this.options.onchange(t)),this.current},_template:function(){return'
'}}),s=o.View.extend({initialize:function(e){this.options=t.merge(e,{id:t.uid(),title:"",floating:"right",cls:"ui-button-icon",icon:"",tooltip:"",onclick:null}),this.setElement(this._template(this.options)),this.$button=this.$el.find(".button");var i=this;a(this.el).on("click",function(){a(".tooltip").hide(),e.onclick&&!i.disabled&&e.onclick()}),this.$button.tooltip({title:e.tooltip,placement:"bottom"})},disable:function(){this.$button.addClass("disabled"),this.disabled=!0},enable:function(){this.$button.removeClass("disabled"),this.disabled=!1},setIcon:function(t){this.$("i").removeClass(this.options.icon).addClass(t),this.options.icon=t},_template:function(t){var e="";t.title&&(e="width: auto;");var i='
';return i+=t.title?' '+t.title+"":'',i+="
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  • '),e+=" "+t.title+"
    • "},_templateMenu:function(){return'
    '+t.content+"
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    "},requirements:function(t){var e="This tool requires ";for(var i in t.requirements){var n=t.requirements[i];e+=n.name,n.version&&(e+=" (Version "+n.version+")"),ihere for more information.'}}}.apply(e,n),!(void 0!==s&&(t.exports=s))}).call(e,i(1))},function(t,e,i){var n,s;(function(o,a){n=[i(4),i(9),i(7)],s=function(t,e,i){var n=o.View.extend({initialize:function(t){var n=this;this.options=t,this.name=t.name||"element",this.multiple=t.multiple||!1,this.message=new i.Message,this.portlet=new e.View({cls:"ui-portlet-section"}),this.select=new i.Select.View({optional:t.optional}),this.button=new i.ButtonIcon({icon:"fa fa-sign-in",floating:"left",tooltip:"Insert new "+this.name,onclick:function(){n.add({id:n.select.value(),name:n.select.text()})}}),this.setElement(this._template(t)),this.$(".ui-list-message").append(this.message.$el),this.$(".ui-list-portlet").append(this.portlet.$el),this.$(".ui-list-button").append(this.button.$el),this.$(".ui-list-select").append(this.select.$el)},value:function(t){if(void 0!==t){if(this.portlet.empty(),a.isArray(t))for(var e in t){var i=t[e],n=null,s=null;"string"!=a.type(i)?(n=i.id,s=i.name):n=s=i,null!=n&&this.add({id:n,name:s})}this._refresh()}var o=[];return this.$(".ui-list-id").each(function(){o.push({id:a(this).prop("id"),name:a(this).find(".ui-list-name").html()})}),0==o.length?null:o},add:function(e){var i=this;if(0===this.$('[id="'+e.id+'"]').length)if(t.isEmpty(e.id))this.message.update({message:"Please select a valid "+this.name+".",status:"danger"});else{var n=a(this._templateRow({id:e.id,name:e.name}));n.on("click",function(){n.remove(),i._refresh()}),n.on("mouseover",function(){n.addClass("portlet-highlight")}),n.on("mouseout",function(){n.removeClass("portlet-highlight")}),this.portlet.append(n),this._refresh()}else this.message.update({message:"This "+this.name+" is already in the list."})},update:function(t){this.select.update(t)},_refresh:function(){this.$(".ui-list-id").length>0?(!this.multiple&&this.button.disable(),this.$(".ui-list-portlet").show()):(this.button.enable(),this.$(".ui-list-portlet").hide()),this.options.onchange&&this.options.onchange()},_template:function(t){return'
    '},_templateRow:function(t){return'
    '+t.name+"
    "}});return{View:n}}.apply(e,n),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(1))},function(t,e,i){var n,s;(function(o,a,r){n=[i(4),i(13)],s=function(t,e){var i=o.View.extend({initialize:function(e){var i=this;this.model=e&&e.model||new o.Model({visible:!0,data:[],id:t.uid(),error_text:"No options available.",wait_text:"Please wait...",multiple:!1,optional:!1,onchange:function(){}}).set(e),this.listenTo(this.model,"change:value",this._changeValue,this),this.listenTo(this.model,"change:wait",this._changeWait,this),this.listenTo(this.model,"change:data",this._changeData,this),this.listenTo(this.model,"change:visible",this._changeVisible,this),this.on("change",function(){i.model.get("onchange")(i.value())}),this.render()},render:function(){var t=this;this.$el.empty().removeClass().addClass("ui-options").append(this.$message=a("
    ")).append(this.$menu=a("
    ").addClass("ui-options-menu")).append(this.$options=a(this._template())),this.all_button=null,this.model.get("multiple")&&(this.all_button=new e.ButtonCheck({onclick:function(){t.$("input").prop("checked",0!==t.all_button.value()),t.value(t._getValue()),t.trigger("change")}}),this.$menu.append(this.all_button.$el)),this._changeData(),this._changeWait(),this._changeVisible()},_changeData:function(){var t=this;this.$options.empty(),this._templateOptions?this.$options.append(this._templateOptions(this.model.get("data"))):r.each(this.model.get("data"),function(e){t.$options.append(a(t._templateOption(e)).addClass("ui-option").tooltip({title:e.tooltip,placement:"bottom"}))});var t=this;this.$("input").on("change",function(){t.value(t._getValue()),t.trigger("change")}),this._changeValue(),this._changeWait()},_changeVisible:function(){this.$el[this.model.get("visible")?"show":"hide"]()},_changeWait:function(){this.model.get("wait")?0===this.length()&&(this._messageShow(this.model.get("wait_text"),"info"),this.$options.hide(),this.$menu.hide()):0===this.length()?(this._messageShow(this.model.get("error_text"),"danger"),this.$options.hide(),this.$menu.hide()):(this.$message.hide(),this.$options.css("display","inline-block"),this.$menu.show())},_changeValue:function(){this._setValue(this.model.get("value")),null!==this._getValue()||this.model.get("multiple")||this.model.get("optional")||this._setValue(this.first()),this.all_button&&this.all_button.value(a.isArray(this._getValue())?this._getValue().length:0,this.length())},value:function(t){return void 0!==t&&this.model.set("value",t),this._getValue()},first:function(){var t=this.$("input").first();return t.length>0?t.val():null},wait:function(){this.model.set("wait",!0)},unwait:function(){this.model.set("wait",!1)},length:function(){return this.$(".ui-option").length},_setValue:function(t){var e=this;if(void 0!==t&&(this.$("input").prop("checked",!1),null!==t)){var i=a.isArray(t)?t:[t];r.each(i,function(t){e.$('input[value="'+t+'"]').first().prop("checked",!0)})}},_getValue:function(){var e=[];return this.$(":checked").each(function(){e.push(a(this).val())}),t.isEmpty(e)?null:this.model.get("multiple")?e:e[0]},_messageShow:function(t,e){this.$message.show().removeClass().addClass("ui-message alert alert-"+e).html(t)},_template:function(){return a("
    ").addClass("ui-options-list")}}),n=i.extend({_templateOption:function(e){var i=t.uid();return a("
    ").addClass("ui-option").append(a("").attr({id:i,type:this.model.get("type"),name:this.model.id,value:e.value})).append(a("