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Automatically create missing required tool shed files from samples when startign the tool shed server.

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This commit is contained in:
Greg Von Kuster
2013-01-31 11:47:32 -05:00
parent fa0959fa14
commit a2eb678062
1 changed files with 33 additions and 0 deletions
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run_community.sh
+33
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@@ -1,4 +1,37 @@
#!/bin/sh
cd `dirname $0`
SAMPLES="
community_wsgi.ini.sample
datatypes_conf.xml.sample
external_service_types_conf.xml.sample
migrated_tools_conf.xml.sample
reports_wsgi.ini.sample
shed_tool_conf.xml.sample
tool_conf.xml.sample
shed_tool_data_table_conf.xml.sample
tool_data_table_conf.xml.sample
tool_sheds_conf.xml.sample
openid_conf.xml.sample
universe_wsgi.ini.sample
tool-data/shared/ncbi/builds.txt.sample
tool-data/shared/ensembl/builds.txt.sample
tool-data/shared/ucsc/builds.txt.sample
tool-data/shared/ucsc/publicbuilds.txt.sample
tool-data/shared/igv/igv_build_sites.txt.sample
tool-data/shared/rviewer/rviewer_build_sites.txt.sample
tool-data/*.sample
static/welcome.html.sample
"
# Create any missing config/location files
for sample in $SAMPLES; do
file=`echo $sample | sed -e 's/\.sample$//'`
if [ ! -f "$file" -a -f "$sample" ]; then
echo "Initializing $file from `basename $sample`"
cp $sample $file
fi
done
python ./scripts/paster.py serve community_wsgi.ini --pid-file=community_webapp.pid --log-file=community_webapp.log $@