From a2eb678062ae7bd6984b13ef36c155edab080f62 Mon Sep 17 00:00:00 2001
From: Greg Von Kuster <greg@bx.psu.edu>
Date: Thu, 31 Jan 2013 11:47:32 -0500
Subject: [PATCH] Automatically create missing required tool shed files from
 samples when startign the tool shed server.

---
 run_community.sh | 33 +++++++++++++++++++++++++++++++++
 1 file changed, 33 insertions(+)

diff --git a/run_community.sh b/run_community.sh
index 124ffc4ad2e..8300e3720b0 100644
--- a/run_community.sh
+++ b/run_community.sh
@@ -1,4 +1,37 @@
 #!/bin/sh
 
 cd `dirname $0`
+
+SAMPLES="
+    community_wsgi.ini.sample
+    datatypes_conf.xml.sample
+    external_service_types_conf.xml.sample
+    migrated_tools_conf.xml.sample
+    reports_wsgi.ini.sample
+    shed_tool_conf.xml.sample
+    tool_conf.xml.sample
+    shed_tool_data_table_conf.xml.sample
+    tool_data_table_conf.xml.sample
+    tool_sheds_conf.xml.sample
+    openid_conf.xml.sample
+    universe_wsgi.ini.sample
+    tool-data/shared/ncbi/builds.txt.sample
+    tool-data/shared/ensembl/builds.txt.sample
+    tool-data/shared/ucsc/builds.txt.sample
+    tool-data/shared/ucsc/publicbuilds.txt.sample
+    tool-data/shared/igv/igv_build_sites.txt.sample
+    tool-data/shared/rviewer/rviewer_build_sites.txt.sample
+    tool-data/*.sample
+    static/welcome.html.sample
+"
+
+# Create any missing config/location files
+for sample in $SAMPLES; do
+    file=`echo $sample | sed -e 's/\.sample$//'`
+    if [ ! -f "$file" -a -f "$sample" ]; then
+        echo "Initializing $file from `basename $sample`"
+        cp $sample $file
+    fi
+done
+
 python ./scripts/paster.py serve community_wsgi.ini --pid-file=community_webapp.pid --log-file=community_webapp.log $@