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Small fixes for GMAJ.
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@@ -110,7 +110,7 @@ class Gmaj( data.Data ):
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"nobutton": "false",
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"urlpause" :"100",
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"debug": "false",
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"posturl": "history_add_to?%s" % urlencode( { 'history_id': dataset.history_id, 'ext': 'maf', 'name': 'GMAJ Output', 'info': 'Added by GMAJ', 'dbkey': dataset.dbkey } )
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"posturl": "history_add_to?%s" % urlencode( { 'history_id': dataset.history_id, 'ext': 'maf', 'name': 'GMAJ Output on data %s' % dataset.hid, 'info': 'Added by GMAJ', 'dbkey': dataset.dbkey } )
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}
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class_name = "edu.psu.bx.gmaj.MajApplet.class"
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archive = "/static/gmaj/gmaj.jar"
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@@ -53,8 +53,7 @@ offset = $annotation['offset']
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#end for
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</configfile>
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<configfile name="filenames_file">
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#set $seq_count = 0
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#for $annotation in $annotations:
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#for $seq_count, $annotation in $enumerate( $annotations ):
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#if $annotation['exons_file'].value:
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$annotation['exons_file'] = ${seq_count}.exons.bed
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#end if
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