From 8dbd35176fae777e86f3364e9a72d0231b01d898 Mon Sep 17 00:00:00 2001 From: Daniel Blankenberg Date: Fri, 16 May 2008 19:01:09 +0000 Subject: [PATCH] Small fixes for GMAJ. --- lib/galaxy/datatypes/images.py | 2 +- tools/visualization/GMAJ.xml | 3 +-- 2 files changed, 2 insertions(+), 3 deletions(-) diff --git a/lib/galaxy/datatypes/images.py b/lib/galaxy/datatypes/images.py index e2c2b8ff52f..90d44ab47f4 100644 --- a/lib/galaxy/datatypes/images.py +++ b/lib/galaxy/datatypes/images.py @@ -110,7 +110,7 @@ class Gmaj( data.Data ): "nobutton": "false", "urlpause" :"100", "debug": "false", - "posturl": "history_add_to?%s" % urlencode( { 'history_id': dataset.history_id, 'ext': 'maf', 'name': 'GMAJ Output', 'info': 'Added by GMAJ', 'dbkey': dataset.dbkey } ) + "posturl": "history_add_to?%s" % urlencode( { 'history_id': dataset.history_id, 'ext': 'maf', 'name': 'GMAJ Output on data %s' % dataset.hid, 'info': 'Added by GMAJ', 'dbkey': dataset.dbkey } ) } class_name = "edu.psu.bx.gmaj.MajApplet.class" archive = "/static/gmaj/gmaj.jar" diff --git a/tools/visualization/GMAJ.xml b/tools/visualization/GMAJ.xml index 5058e2efa4d..09510fbb38e 100644 --- a/tools/visualization/GMAJ.xml +++ b/tools/visualization/GMAJ.xml @@ -53,8 +53,7 @@ offset = $annotation['offset'] #end for -#set $seq_count = 0 -#for $annotation in $annotations: +#for $seq_count, $annotation in $enumerate( $annotations ): #if $annotation['exons_file'].value: $annotation['exons_file'] = ${seq_count}.exons.bed #end if