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Merge pull request #13735 from galaxybot/dev_auto_update_dependencies

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Update Python dependencies
This commit is contained in:
Dannon
2022-04-19 08:53:47 -07:00
committed by GitHub
parent 3f8c9356ed faeba22f30
commit 83b3ff32e4
4 changed files with 35 additions and 35 deletions
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lib/galaxy/dependencies/dev-requirements.txt
+13 -13
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@@ -5,7 +5,7 @@ adal==1.2.7
aiofiles==0.8.0; python_version >= "3.6" and python_version < "4.0"
alabaster==0.7.12; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
alembic==1.7.7; python_version >= "3.6"
amqp==5.1.0; python_version >= "3.7"
amqp==5.1.1; python_version >= "3.7"
anyio==3.5.0; python_version >= "3.7" and python_full_version >= "3.6.2"
apispec==5.1.1; python_version >= "3.6"
appdirs==1.4.4
@@ -63,9 +63,9 @@ ecdsa==0.17.0; python_version >= "2.6" and python_full_version < "3.0.0" or pyth
edam-ontology==1.25.2
fabric3==1.14.post1
fastapi-utils==0.2.1; python_version >= "3.6" and python_version < "4.0"
fastapi==0.75.1; python_full_version >= "3.6.1"
fastapi==0.75.2; python_full_version >= "3.6.1"
fluent-logger==0.10.0; python_version >= "3.5"
fonttools==4.31.2; python_version >= "3.7"
fonttools==4.32.0; python_version >= "3.7"
fs==2.4.15
funcsigs==1.0.2
future==0.18.2; (python_version >= "2.6" and python_full_version < "3.0.0") or (python_full_version >= "3.3.0")
@@ -82,7 +82,7 @@ humanfriendly==10.0; python_version >= "3.6" and python_full_version < "3.0.0" a
idna==3.3
imagesize==1.3.0; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
importlib-metadata==4.11.3; python_version == "3.7" and (python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "3.8" or python_full_version >= "3.6.0" and python_version < "3.8" and python_version >= "3.7") and python_full_version >= "3.6.2" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6")
importlib-resources==5.6.0; python_version >= "3.7"
importlib-resources==5.7.1; python_version >= "3.7"
iniconfig==1.1.1; python_version >= "3.7"
isa-rwval==0.10.10
isodate==0.6.1; python_version >= "3.7" and python_version < "4"
@@ -111,7 +111,7 @@ networkx==2.5; python_version >= "3.6" and python_version < "4"
nodeenv==1.6.0
nose==1.3.7
nosehtml==0.4.6
numpy==1.21.1; python_version >= "3.7"
numpy==1.21.6; python_version >= "3.7" and python_version < "3.11"
oauthlib==3.2.0; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
outcome==1.1.0; python_version >= "3.7" and python_version < "4.0"
oyaml==1.0
@@ -123,7 +123,7 @@ pastedeploy==2.1.1
pathspec==0.9.0; python_full_version >= "3.6.2" and python_version >= "3.6"
pbr==5.8.1; python_version >= "2.6"
pillow==9.1.0; python_version >= "3.7"
platformdirs==2.5.1; python_version >= "3.7" and python_full_version >= "3.6.2"
platformdirs==2.5.2; python_version >= "3.7" and python_full_version >= "3.6.2"
pluggy==1.0.0; python_version >= "3.7"
port-for==0.6.2; python_version >= "3.7"
prettytable==3.2.0; python_version >= "3.7"
@@ -146,7 +146,7 @@ pykwalify==1.8.0
pylibmagic==0.2.0; python_version >= "3.7"
pynacl==1.5.0; python_version >= "3.6"
pyopenssl==22.0.0; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" or python_full_version >= "3.6.0" and python_version < "4" and python_version >= "3.7"
pyparsing==3.0.7; python_version >= "3.6"
pyparsing==3.0.8; python_full_version >= "3.6.8"
pyreadline3==3.4.1; sys_platform == "win32" and python_version >= "3.8" and (python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.5.0")
pyreadline==2.1; sys_platform == "win32" and python_version < "3.8" and (python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.5.0")
pyrsistent==0.18.1; python_version >= "3.7"
@@ -157,7 +157,7 @@ pytest-celery==0.0.0
pytest-cov==3.0.0; python_version >= "3.6"
pytest-html==3.1.1; python_version >= "3.6"
pytest-json-report==1.5.0
pytest-metadata==2.0.0; python_version >= "3.7" and python_version < "4.0"
pytest-metadata==2.0.1; python_full_version >= "3.7.0" and python_full_version < "3.11.0" and python_version >= "3.6"
pytest-mock==3.7.0; python_version >= "3.7"
pytest-postgresql==4.1.1; python_version >= "3.7"
pytest-shard==0.1.2; python_version >= "3.6"
@@ -186,9 +186,9 @@ rsa==4.8; python_version >= "3.6" and python_version < "4"
ruamel.yaml.clib==0.2.6; platform_python_implementation == "CPython" and python_version < "3.10" and python_version >= "3.6"
ruamel.yaml==0.17.17; python_version >= "3.7" and python_version < "4"
schema-salad==8.2.20220204150214; python_version >= "3.7" and python_version < "4"
scipy==1.7.3; python_version >= "3.7"
scipy==1.7.3; python_version >= "3.7" and python_version < "3.11"
selenium==4.1.3; python_version >= "3.7" and python_version < "4.0"
setuptools-scm==5.0.2; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4"
setuptools-scm==5.0.2; python_version >= "3.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4" and python_version >= "3.7"
shellescape==3.8.1; python_version >= "3.6" and python_version < "4"
six==1.16.0; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" or python_full_version >= "3.3.0" and python_version >= "3.7" and python_version < "4"
sniffio==1.2.0; python_version >= "3.7" and python_full_version >= "3.6.2" and python_version < "4.0"
@@ -226,9 +226,9 @@ trio-websocket==0.9.2; python_version >= "3.7" and python_version < "4.0"
trio==0.20.0; python_version >= "3.7" and python_version < "4.0"
tuspy==0.2.5
tuswsgi==0.5.4
twill==3.0.1
typed-ast==1.5.2; python_version < "3.8" and implementation_name == "cpython" and python_full_version >= "3.6.2" and python_version >= "3.6"
typing-extensions==4.1.1; python_version >= "3.6"
twill==3.0.2
typed-ast==1.5.3; python_version < "3.8" and implementation_name == "cpython" and python_full_version >= "3.6.2" and python_version >= "3.6"
typing-extensions==4.2.0; python_version >= "3.7"
tzlocal==2.1; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4"
ubiquerg==0.6.2
urllib3==1.26.9; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" or python_full_version >= "3.6.0" and python_version < "4" and python_version >= "3.7"
lib/galaxy/dependencies/pinned-lint-requirements.txt
+15 -15
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@@ -8,20 +8,20 @@ mypy-extensions==0.4.3
pycodestyle==2.8.0
pyflakes==2.4.0
tomli==2.0.1
typed-ast==1.5.2
types-bleach==4.1.5
types-boto==2.49.11
types-contextvars==2.4.4
types-cryptography==3.3.19
types-dataclasses==0.6.4
types-docutils==0.18.0
types-Markdown==3.3.12
types-paramiko==2.8.17
typed-ast==1.5.3
types-bleach==5.0.1
types-boto==2.49.13
types-contextvars==2.4.5
types-cryptography==3.3.20
types-dataclasses==0.6.5
types-docutils==0.18.2
types-Markdown==3.3.13
types-paramiko==2.8.19
types-pkg-resources==0.1.3
types-python-dateutil==2.8.10
types-PyYAML==6.0.5
types-requests==2.27.16
types-six==1.16.12
types-urllib3==1.26.11
typing_extensions==4.1.1
types-python-dateutil==2.8.11
types-PyYAML==6.0.6
types-requests==2.27.19
types-six==1.16.15
types-urllib3==1.26.13
typing_extensions==4.2.0
zipp==3.8.0
lib/galaxy/dependencies/pinned-requirements.txt
+6 -6
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@@ -4,7 +4,7 @@ a2wsgi==1.4.1; python_full_version >= "3.6.2"
adal==1.2.7
aiofiles==0.8.0; python_version >= "3.6" and python_version < "4.0"
alembic==1.7.7; python_version >= "3.6"
amqp==5.1.0; python_version >= "3.7"
amqp==5.1.1; python_version >= "3.7"
anyio==3.5.0; python_version >= "3.7" and python_full_version >= "3.6.2"
apispec==5.1.1; python_version >= "3.6"
appdirs==1.4.4
@@ -53,7 +53,7 @@ ecdsa==0.17.0; python_version >= "2.6" and python_full_version < "3.0.0" or pyth
edam-ontology==1.25.2
fabric3==1.14.post1
fastapi-utils==0.2.1; python_version >= "3.6" and python_version < "4.0"
fastapi==0.75.1; python_full_version >= "3.6.1"
fastapi==0.75.2; python_full_version >= "3.6.1"
fs==2.4.15
funcsigs==1.0.2
future==0.18.2; (python_version >= "2.6" and python_full_version < "3.0.0") or (python_full_version >= "3.3.0")
@@ -67,7 +67,7 @@ h5py==3.6.0; python_version >= "3.7"
humanfriendly==10.0; python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.5.0"
idna==3.3; python_full_version >= "3.6.2" and python_version >= "3.7" and python_version < "4"
importlib-metadata==4.11.3; python_version == "3.7" and (python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "3.8" or python_full_version >= "3.6.0" and python_version < "3.8" and python_version >= "3.7")
importlib-resources==5.6.0; python_version >= "3.7"
importlib-resources==5.7.1; python_version >= "3.7"
isa-rwval==0.10.10
isodate==0.6.1; python_version >= "3.7" and python_version < "4"
jsonref==0.2; python_version >= "3.6"
@@ -87,7 +87,7 @@ mypy-extensions==0.4.3; python_version >= "3.6" and python_version < "4"
networkx==2.5; python_version >= "3.6" and python_version < "4"
nodeenv==1.6.0
nose==1.3.7
numpy==1.21.1; python_version >= "3.7"
numpy==1.21.6; python_version >= "3.7" and python_version < "3.11"
oauthlib==3.2.0; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
oyaml==1.0
packaging==21.3; python_version >= "3.6"
@@ -113,7 +113,7 @@ pyjwt==2.3.0; python_version >= "3.6"
pykwalify==1.8.0
pylibmagic==0.2.0; python_version >= "3.7"
pynacl==1.5.0; python_version >= "3.6"
pyparsing==3.0.7; python_version >= "3.6"
pyparsing==3.0.8; python_full_version >= "3.6.8"
pyreadline3==3.4.1; sys_platform == "win32" and python_version >= "3.8" and (python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.5.0")
pyreadline==2.1; sys_platform == "win32" and python_version < "3.8" and (python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.5.0")
pyrsistent==0.18.1; python_version >= "3.7"
@@ -158,7 +158,7 @@ tifffile==2021.11.2; python_version >= "3.7"
tornado==6.1; python_version >= "3.5"
tqdm==4.64.0; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.4.0"
tuswsgi==0.5.4
typing-extensions==4.1.1; python_version >= "3.6"
typing-extensions==4.2.0; python_version >= "3.7"
tzlocal==2.1; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4"
ubiquerg==0.6.2
urllib3==1.26.9; python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_full_version >= "3.6.0" and python_version < "4" and python_version >= "3.6"
pyproject.toml
+1 -1
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@@ -83,7 +83,7 @@ pykwalify = "*"
pylibmagic = "*"
pyparsing = "*"
pysam = "*"
python = ">=3.7,<4"
python = ">=3.7,<3.11" # Keep maximum version strict to appease numpy and scipy
python-dateutil = "*"
python-magic = "*"
python-multipart = "*" # required to support form parsing in FastAPI/Starlette