mirror of
https://github.com/galaxyproject/galaxy.git
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Add help section content
This commit is contained in:
guerler
@@ -163,9 +163,49 @@ define( [ 'utils/utils', 'mvc/ui/ui-misc', 'mvc/form/form-view', 'mvc/ui/ui-tabl
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},
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_renderHelp: function( len_type ) {
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window.console.log( len_type);
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this.$help.empty().addClass( 'infomessagesmall' ).html( 'hallo' );
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this.$help.empty()
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.addClass( 'alert alert-info' )
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.html( len_type == 'fasta' ? this._templateFasta() : this._templateLen() );
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},
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_templateLen: function() {
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return '<h4>Length Format</h4>' +
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'<p>' +
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'The length format is two-column, separated by whitespace, of the form:' +
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'<pre>chrom/contig length of chrom/contig</pre>' +
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'</p>' +
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'<p>' +
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'For example, the first few entries of <em>mm9.len</em> are as follows:' +
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'<pre>' +
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'chr1 197195432\n' +
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'chr2 181748087\n' +
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'chr3 159599783\n' +
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'chr4 155630120\n' +
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'chr5 152537259' +
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'</pre>' +
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'</p>' +
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'<p>Trackster uses this information to populate the select box for chrom/contig, and' +
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'to set the maximum basepair of the track browser. You may either upload a .len file' +
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'of this format (Len File option), or directly enter the information into the box ' +
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'(Len Entry option).</p>';
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},
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_templateFasta: function() {
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return '<h4>FASTA format</h4>' +
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'<p>' +
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'This is a multi-fasta file from your current history that provides the genome' +
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'sequences for each chromosome/contig in your build.' +
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'</p>' +
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'<p>' +
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'Here is a snippet from an example multi-fasta file:' +
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'<pre>' +
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'>chr1\n' +
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'ATTATATATAAGACCACAGAGAGAATATTTTGCCCGG...\n\n' +
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'>chr2\n' +
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'GGCGGCCGCGGCGATATAGAACTACTCATTATATATA...\n\n' +
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'...' +
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'</pre>' +
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'</p>';
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}
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});
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@@ -1 +1 @@
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@@ -1,2 +1,2 @@
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define(["utils/utils","mvc/ui/ui-misc","mvc/form/form-view","mvc/ui/ui-table"],function(a,b,c,d){var e=Backbone.Collection.extend({comparator:function(a,b){return a=a.get("name"),b=b.get("name"),a>b?1:b>a?-1:0}}),f=Backbone.View.extend({initialize:function(){var a=this;this.model=new Backbone.Model,this.model.url=Galaxy.root+"api/users/"+Galaxy.user.id+"/custom_builds_metadata",this.collection=new e,this.collection.url=Galaxy.root+"api/users/"+Galaxy.user.id+"/custom_builds",this.message=new b.Message({}),this.installed_builds=new b.Select.View({optional:!0,onchange:function(){a.installed_builds.value(null)},empty_text:"List of available builds:",error_text:"No system installed builds available."}),this.table=new d.View({cls:"grid",selectable:!1}),this.table.addHeader("Name"),this.table.addHeader("Key"),this.table.addHeader("Number of chroms/contigs"),this.table.addHeader(""),this.table.appendHeader(),this.setElement($("<div/>").append($("<h4/>").text("Current Custom Builds")).append(this.table.$el).append($("<h4/>").text("System Installed Builds").addClass("ui-margin-top")).append(this.installed_builds.$el).append($("<h4/>").text("Add a Custom Build").addClass("ui-margin-top")).append(this.message.$el).append($("<span/>").addClass("ui-margin-top").append(this.$form=$("<div/>").css({width:"49%","float":"left"})).append(this.$help=$("<div/>").css({width:"49%","float":"right"})))),this.listenTo(this.collection,"add remove reset",function(){a._renderTable()}),this.listenTo(this.model,"change",function(){a._renderForm()}),this.collection.fetch(),this.model.fetch()},render:function(){this._renderTable(),this._renderForm()},_renderTable:function(){var a=this;this.table.delAll(),this.collection.sort(),this.collection.each(function(c){a.table.add(c.id),a.table.add(c.get("name")),a.table.add(void 0!==c.get("count")?c.get("count"):"-"),a.table.add(new b.ButtonIcon({icon:"fa-trash-o",cls:"ui-button-icon-plain",tooltip:"Delete custom build.",onclick:function(){c.destroy()}}).$el),a.table.append(c.id)})},_renderForm:function(){var a=this,d="fasta",e=new c({inputs:[{type:"text",name:"name",label:"Name",help:"Specify a build name e.g. Hamster."},{type:"text",name:"id",label:"Key",help:"Specify a build key e.g. hamster_v1."},{name:"len",type:"conditional",test_param:{name:"type",label:"Definition",help:"Provide the data source.",type:"select",value:d,data:[{value:"fasta",label:"FASTA-file from history"},{value:"file",label:"Len-file from disk"},{value:"text",label:"Len-file by copy/paste"}]},cases:[{value:"fasta",inputs:[{type:"select",name:"value",label:"FASTA-file",data:this.model.get("fasta_hdas")}]},{value:"file",inputs:[{type:"upload",name:"value",label:"Len-file",data:this.model.get("len_hdas")}]},{value:"text",inputs:[{type:"text",area:!0,name:"value",label:"Edit/Paste"}]}]}],buttons:{save:new b.Button({icon:"fa-save",tooltip:"Create new Build",title:"Save",cls:"ui-button btn btn-primary",floating:"clear",onclick:function(){var b=e.data.create();b.id&&b.name?a.collection.create(b,{wait:!0,success:function(b){a.message.update(b.get("message")?{message:b.get("message"),status:"warning"}:{message:"Successfully added a new custom build.",status:"success"})},error:function(b,c){var d=c&&c.responseJSON&&c.responseJSON.err_msg;a.message.update({message:d||"Failed to create custom build.",status:"danger"})}}):a.message.update({message:"All inputs are required.",status:"danger"})}})},onchange:function(){var b=e.data.match("len|type");if(b){var c=e.field_list[b];a._renderHelp(c.value())}}});this.$form.empty().append(e.$el),this.installed_builds.update(this.model.get("installed_builds")),this._renderHelp(d)},_renderHelp:function(a){window.console.log(a),this.$help.empty().addClass("infomessagesmall").html("hallo")}});return{View:f}});
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define(["utils/utils","mvc/ui/ui-misc","mvc/form/form-view","mvc/ui/ui-table"],function(a,b,c,d){var e=Backbone.Collection.extend({comparator:function(a,b){return a=a.get("name"),b=b.get("name"),a>b?1:b>a?-1:0}}),f=Backbone.View.extend({initialize:function(){var a=this;this.model=new Backbone.Model,this.model.url=Galaxy.root+"api/users/"+Galaxy.user.id+"/custom_builds_metadata",this.collection=new e,this.collection.url=Galaxy.root+"api/users/"+Galaxy.user.id+"/custom_builds",this.message=new b.Message({}),this.installed_builds=new b.Select.View({optional:!0,onchange:function(){a.installed_builds.value(null)},empty_text:"List of available builds:",error_text:"No system installed builds available."}),this.table=new d.View({cls:"grid",selectable:!1}),this.table.addHeader("Name"),this.table.addHeader("Key"),this.table.addHeader("Number of chroms/contigs"),this.table.addHeader(""),this.table.appendHeader(),this.setElement($("<div/>").append($("<h4/>").text("Current Custom Builds")).append(this.table.$el).append($("<h4/>").text("System Installed Builds").addClass("ui-margin-top")).append(this.installed_builds.$el).append($("<h4/>").text("Add a Custom Build").addClass("ui-margin-top")).append(this.message.$el).append($("<span/>").addClass("ui-margin-top").append(this.$form=$("<div/>").css({width:"49%","float":"left"})).append(this.$help=$("<div/>").css({width:"49%","float":"right"})))),this.listenTo(this.collection,"add remove reset",function(){a._renderTable()}),this.listenTo(this.model,"change",function(){a._renderForm()}),this.collection.fetch(),this.model.fetch()},render:function(){this._renderTable(),this._renderForm()},_renderTable:function(){var a=this;this.table.delAll(),this.collection.sort(),this.collection.each(function(c){a.table.add(c.id),a.table.add(c.get("name")),a.table.add(void 0!==c.get("count")?c.get("count"):"-"),a.table.add(new b.ButtonIcon({icon:"fa-trash-o",cls:"ui-button-icon-plain",tooltip:"Delete custom build.",onclick:function(){c.destroy()}}).$el),a.table.append(c.id)})},_renderForm:function(){var a=this,d="fasta",e=new c({inputs:[{type:"text",name:"name",label:"Name",help:"Specify a build name e.g. Hamster."},{type:"text",name:"id",label:"Key",help:"Specify a build key e.g. hamster_v1."},{name:"len",type:"conditional",test_param:{name:"type",label:"Definition",help:"Provide the data source.",type:"select",value:d,data:[{value:"fasta",label:"FASTA-file from history"},{value:"file",label:"Len-file from disk"},{value:"text",label:"Len-file by copy/paste"}]},cases:[{value:"fasta",inputs:[{type:"select",name:"value",label:"FASTA-file",data:this.model.get("fasta_hdas")}]},{value:"file",inputs:[{type:"upload",name:"value",label:"Len-file",data:this.model.get("len_hdas")}]},{value:"text",inputs:[{type:"text",area:!0,name:"value",label:"Edit/Paste"}]}]}],buttons:{save:new b.Button({icon:"fa-save",tooltip:"Create new Build",title:"Save",cls:"ui-button btn btn-primary",floating:"clear",onclick:function(){var b=e.data.create();b.id&&b.name?a.collection.create(b,{wait:!0,success:function(b){a.message.update(b.get("message")?{message:b.get("message"),status:"warning"}:{message:"Successfully added a new custom build.",status:"success"})},error:function(b,c){var d=c&&c.responseJSON&&c.responseJSON.err_msg;a.message.update({message:d||"Failed to create custom build.",status:"danger"})}}):a.message.update({message:"All inputs are required.",status:"danger"})}})},onchange:function(){var b=e.data.match("len|type");if(b){var c=e.field_list[b];a._renderHelp(c.value())}}});this.$form.empty().append(e.$el),this.installed_builds.update(this.model.get("installed_builds")),this._renderHelp(d)},_renderHelp:function(a){this.$help.empty().addClass("alert alert-info").html("fasta"==a?this._templateFasta():this._templateLen())},_templateLen:function(){return"<h4>Length Format</h4><p>The length format is two-column, separated by whitespace, of the form:<pre>chrom/contig length of chrom/contig</pre></p><p>For example, the first few entries of <em>mm9.len</em> are as follows:<pre>chr1 197195432\nchr2 181748087\nchr3 159599783\nchr4 155630120\nchr5 152537259</pre></p><p>Trackster uses this information to populate the select box for chrom/contig, andto set the maximum basepair of the track browser. You may either upload a .len fileof this format (Len File option), or directly enter the information into the box (Len Entry option).</p>"},_templateFasta:function(){return"<h4>FASTA format</h4><p>This is a multi-fasta file from your current history that provides the genomesequences for each chromosome/contig in your build.</p><p>Here is a snippet from an example multi-fasta file:<pre>>chr1\nATTATATATAAGACCACAGAGAGAATATTTTGCCCGG...\n\n>chr2\nGGCGGCCGCGGCGATATAGAACTACTCATTATATATA...\n\n...</pre></p>"}});return{View:f}});
|
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//# sourceMappingURL=../../../maps/mvc/user/user-custom-builds.js.map
|
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Reference in New Issue
Block a user