From 76bcf23b434984cd45002192a72bb90d3c06ade5 Mon Sep 17 00:00:00 2001 From: guerler Date: Fri, 17 Mar 2017 22:51:31 -0400 Subject: [PATCH] Add help section content --- .../scripts/mvc/user/user-custom-builds.js | 44 ++++++++++++++++++- .../maps/mvc/user/user-custom-builds.js.map | 2 +- static/scripts/bundled/analysis.bundled.js | 2 +- .../scripts/bundled/analysis.bundled.js.map | 2 +- static/scripts/bundled/libs.bundled.js.map | 2 +- static/scripts/mvc/user/user-custom-builds.js | 2 +- 6 files changed, 47 insertions(+), 7 deletions(-) diff --git a/client/galaxy/scripts/mvc/user/user-custom-builds.js b/client/galaxy/scripts/mvc/user/user-custom-builds.js index d6671e2d891..ee1a800028a 100644 --- a/client/galaxy/scripts/mvc/user/user-custom-builds.js +++ b/client/galaxy/scripts/mvc/user/user-custom-builds.js @@ -163,9 +163,49 @@ define( [ 'utils/utils', 'mvc/ui/ui-misc', 'mvc/form/form-view', 'mvc/ui/ui-tabl }, _renderHelp: function( len_type ) { - window.console.log( len_type); - this.$help.empty().addClass( 'infomessagesmall' ).html( 'hallo' ); + this.$help.empty() + .addClass( 'alert alert-info' ) + .html( len_type == 'fasta' ? this._templateFasta() : this._templateLen() ); + }, + _templateLen: function() { + return '

Length Format

' + + '

' + + 'The length format is two-column, separated by whitespace, of the form:' + + '

chrom/contig   length of chrom/contig
' + + '

' + + '

' + + 'For example, the first few entries of mm9.len are as follows:' + + '

' +
+                            'chr1    197195432\n' +
+                            'chr2    181748087\n' +
+                            'chr3    159599783\n' +
+                            'chr4    155630120\n' +
+                            'chr5    152537259' +
+                        '
' + + '

' + + '

Trackster uses this information to populate the select box for chrom/contig, and' + + 'to set the maximum basepair of the track browser. You may either upload a .len file' + + 'of this format (Len File option), or directly enter the information into the box ' + + '(Len Entry option).

'; + }, + + _templateFasta: function() { + return '

FASTA format

' + + '

' + + 'This is a multi-fasta file from your current history that provides the genome' + + 'sequences for each chromosome/contig in your build.' + + '

' + + '

' + + 'Here is a snippet from an example multi-fasta file:' + + '

' +
+                            '>chr1\n' +
+                            'ATTATATATAAGACCACAGAGAGAATATTTTGCCCGG...\n\n' +
+                            '>chr2\n' +
+                            'GGCGGCCGCGGCGATATAGAACTACTCATTATATATA...\n\n' +
+                            '...' +
+                        '
' + + '

'; } }); diff --git a/static/maps/mvc/user/user-custom-builds.js.map b/static/maps/mvc/user/user-custom-builds.js.map index 01d012fd213..c8f994264c8 100644 --- a/static/maps/mvc/user/user-custom-builds.js.map +++ b/static/maps/mvc/user/user-custom-builds.js.map @@ -1 +1 @@ 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  • ").addClass("dataset unpaired").append(l("").addClass("dataset-name").text(s("Pair these datasets")))},_renderUnpairedEmpty:function(){var e=l('
    ').text("("+s("no remaining unpaired datasets")+")");return this.$(".unpaired-columns .paired-column .column-datasets").empty().prepend(e),e},_renderUnpairedNotShown:function(){var e=l('
    ').text("("+s("no datasets were found matching the current filters")+")");return this.$(".unpaired-columns .paired-column .column-datasets").empty().prepend(e),e},_adjUnpairedOnScrollbar:function(){var e=this.$(".unpaired-columns").last(),t=this.$(".unpaired-columns .reverse-column .dataset").first();if(t.length){var i=e.offset().left+e.outerWidth(),n=t.offset().left+t.outerWidth(),s=Math.floor(i)-Math.floor(n);this.$(".unpaired-columns .forward-column").css("margin-left",s>0?s:0)}},_renderPaired:function(e,t){if(this.$(".paired-column-title .title").text([this.paired.length,s("paired")].join(" ")),this.$(".unpair-all-link").toggle(0!==this.paired.length),0===this.paired.length)return void this._renderPairedEmpty();this.$(".remove-extensions-link").show(),this.$(".paired-columns .column-datasets").empty();var i=this;this.paired.forEach(function(e,t){var n=new u({pair:e});i.$(".paired-columns .column-datasets").append(n.render().$el).append(['"].join(""))})},_renderPairedEmpty:function(){var e=l('
    ').text("("+s("no paired datasets yet")+")");return this.$(".paired-columns .column-datasets").empty().prepend(e),e},_renderFooter:function(e,t){var i=this.$(".footer").empty().html(p.templates.footer());return this.$(".remove-extensions").prop("checked",this.removeExtensions),"function"==typeof this.oncancel&&this.$(".cancel-create.btn").show(),i},_addPluginComponents:function(){this._chooseFiltersPopover(".choose-filters-link"),this.$(".help-content i").hoverhighlight(".collection-creator","rgba( 64, 255, 255, 1.0 )")},_chooseFiltersPopover:function(e){function t(e,t){return['"].join("")}var i=l(o.template(['
    ','
    ',s("Choose from the following filters to change which unpaired reads are shown in the display"),":
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",n("You can "),'',n("load your own data"),"",n(" or "),'',n("get data from an external source"),""].join(""),initialize:function(e){e=e||{},this.preferences=new s(a.extend({id:s.storageKey()},a.pick(e,a.keys(s.prototype.defaults)))),l.prototype.initialize.call(this,e),this.panelStack=[],this.currentContentId=e.currentContentId||null},_setUpListeners:function(){l.prototype._setUpListeners.call(this);var e=this;this.on("new-model",function(){e.preferences.set("scrollPosition",0)})},loadCurrentHistory:function(){return this.loadHistory(null,{url:Galaxy.root+"history/current_history_json"})},switchToHistory:function(e,t){return Galaxy.user.isAnonymous()?(this.trigger("error",n("You must be logged in to switch histories"),n("Anonymous user")),o.when()):this.loadHistory(e,{url:Galaxy.root+"history/set_as_current?id="+e})},createNewHistory:function(e){return Galaxy.user.isAnonymous()?(this.trigger("error",n("You must be logged in to create histories"),n("Anonymous user")),o.when()):this.loadHistory(null,{url:Galaxy.root+"history/create_new_current"})},setModel:function(e,t,i){return l.prototype.setModel.call(this,e,t,i),this.model&&this.model.id&&(this.log("checking for updates"),this.model.checkForUpdates()),this},_setUpModelListeners:function(){return l.prototype._setUpModelListeners.call(this),this.listenTo(this.model,{"change:nice_size change:size":function(){this.trigger("history-size-change",this,this.model,arguments)},"change:id":function(){this.once("loading-done",function(){this.model.checkForUpdates()})}})},_setUpCollectionListeners:function(){l.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,"state:ready",function(e,t,i){e.get("visible")||this.collection.storage.includeHidden()||this.removeItemView(e)})},_setUpBehaviors:function(e){e=e||this.$el;var t=this;return l.prototype._setUpBehaviors.call(t,e),this._debouncedScrollCaptureHandler||(this._debouncedScrollCaptureHandler=a.debounce(function(){t.$el.is(":visible")&&t.preferences.set("scrollPosition",o(this).scrollTop())},40)),t.$scrollContainer(e).off("scroll",this._debouncedScrollCaptureHandler).on("scroll",this._debouncedScrollCaptureHandler),t},_buildNewRender:function(){if(!this.model)return o();var e=l.prototype._buildNewRender.call(this);return e.find(".search").prependTo(e.find("> .controls")),this._renderQuotaMessage(e),e},_renderQuotaMessage:function(e){return e=e||this.$el,o(this.templates.quotaMsg({},this)).prependTo(e.find(".messages"))},_renderTags:function(e){var t=this;l.prototype._renderTags.call(t,e),t.preferences.get("tagsEditorShown")&&t.tagsEditor.toggle(!0),t.listenTo(t.tagsEditor,"hiddenUntilActivated:shown hiddenUntilActivated:hidden",function(e){t.preferences.set("tagsEditorShown",e.hidden)})},_renderAnnotation:function(e){var t=this;l.prototype._renderAnnotation.call(t,e),t.preferences.get("annotationEditorShown")&&t.annotationEditor.toggle(!0),t.listenTo(t.annotationEditor,"hiddenUntilActivated:shown hiddenUntilActivated:hidden",function(e){t.preferences.set("annotationEditorShown",e.hidden)})},_swapNewRender:function(e){l.prototype._swapNewRender.call(this,e);var t=this;return a.delay(function(){var e=t.preferences.get("scrollPosition");e&&t.scrollTo(e,0)},10),this},_attachItems:function(e){l.prototype._attachItems.call(this,e);var t=this;return t.currentContentId&&t._setCurrentContentById(t.currentContentId),this},addItemView:function(e,t,i){var n=l.prototype.addItemView.call(this,e,t,i);return n&&this.panelStack.length?this._collapseDrilldownPanel():n},_setUpItemViewListeners:function(e){var t=this;return l.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{"expanded:drilldown":function(e,t){this._expandDrilldownPanel(t)},"collapsed:drilldown":function(e,t){this._collapseDrilldownPanel(t)}})},setCurrentContent:function(e){this.$(".history-content.current-content").removeClass("current-content"),e?(e.$el.addClass("current-content"),this.currentContentId=e.model.id):this.currentContentId=null},_setCurrentContentById:function(e){var t=this.viewFromModelId(e)||null;this.setCurrentContent(t)},_expandDrilldownPanel:function(e){this.panelStack.push(e),this.$controls().add(this.$list()).hide(),e.parentName=this.model.get("name"),e.delegateEvents().render().$el.appendTo(this.$el)},_collapseDrilldownPanel:function(e){this.panelStack.pop(),this.$controls().add(this.$list()).show()},events:a.extend(a.clone(l.prototype.events),{"click .uploader-link":function(e){Galaxy.upload.show(e)},"click .get-data-link":function(e){var t=o(".toolMenuContainer");t.parent().scrollTop(0),t.find('span:contains("Get Data")').click()}}),listenToGalaxy:function(e){this.listenTo(e,{"galaxy_main:load":function(e){var t=e.fullpath,i=null,n={display:/datasets\/([a-f0-9]+)\/display/,edit:/datasets\/([a-f0-9]+)\/edit/,report_error:/dataset\/errors\?id=([a-f0-9]+)/,rerun:/tool_runner\/rerun\?id=([a-f0-9]+)/,show_params:/datasets\/([a-f0-9]+)\/show_params/};a.find(n,function(e,n){return i=a.result(t.match(e),1)}),this._setCurrentContentById(i?"dataset-"+i:null)},"center-panel:load":function(e){this._setCurrentContentById()}})},connectToQuotaMeter:function(e){return e?(this.listenTo(e,"quota:over",this.showQuotaMessage),this.listenTo(e,"quota:under",this.hideQuotaMessage),this.on("rendered rendered:initial",function(){e&&e.isOverQuota()&&this.showQuotaMessage()}),this):this},clearMessages:function(e){var t=a.isUndefined(e)?this.$messages().children('[class$="message"]'):o(e.currentTarget);return t=t.not(".quota-message"),t.fadeOut(this.fxSpeed,function(){o(this).remove()}),this},showQuotaMessage:function(){var e=this.$(".quota-message");e.is(":hidden")&&e.slideDown(this.fxSpeed)},hideQuotaMessage:function(){var e=this.$(".quota-message");e.is(":hidden")||e.slideUp(this.fxSpeed)},unhideHidden:function(){var e=this;return confirm(n("Really unhide all hidden datasets?"))?e.model.contents._filterAndUpdate({visible:!1,deleted:"",purged:""},{visible:!0}).done(function(){e.model.contents.includeHidden||e.renderItems()}):r.when()},deleteHidden:function(){var e=this;return confirm(n("Really delete all hidden datasets?"))?e.model.contents._filterAndUpdate({visible:!1,deleted:"",purged:""},{deleted:!0,visible:!0}):r.when()},toString:function(){return"CurrentHistoryView("+(this.model?this.model.get("name"):"")+")"}});return d.prototype.templates=function(){var e=i.wrapTemplate(['
            ',n("You are over your disk quota"),". ",n("Tool execution is on hold until your disk usage drops below your allocated quota"),".","
            "],"history");return a.extend(a.clone(l.prototype.templates),{quotaMsg:e})}(),{CurrentHistoryView:d}}.apply(t,n),!(void 0!==s&&(e.exports=s))}).call(t,i(2),i(1),i(1))},function(e,t,i){var n,s;(function(a,o,r){n=[i(116),i(42),i(12),i(72),i(112),i(113),i(77),i(66),i(34),i(110),i(109),i(22),i(80),i(6),i(5),i(15)],s=function(e,t,i,n,s,l,d,c,h,u,p,g,f,m,v){"use strict";var _=e.HistoryView,y=_.extend({HDAViewClass:s.HDAListItemEdit,HDCAViewClass:l.HDCAListItemEdit,initialize:function(e){e=e||{},_.prototype.initialize.call(this,e),this.tagsEditor=null,this.annotationEditor=null,this.purgeAllowed=e.purgeAllowed||!1,this.annotationEditorShown=e.annotationEditorShown||!1,this.tagsEditorShown=e.tagsEditorShown||!1},_setUpListeners:function(){return _.prototype._setUpListeners.call(this),this.on({"droptarget:drop":function(e,t){this.dataDropped(t),this.dropTargetOff()},"view:attached view:removed":function(){this._renderCounts()},"search:loading-progress":this._renderSearchProgress,"search:searching":this._renderSearchFindings})},_setUpModelListeners:function(){return _.prototype._setUpModelListeners.call(this),this.listenTo(this.model,"change:size",this.updateHistoryDiskSize),this},_setUpCollectionListeners:function(){return _.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,{"change:deleted":this._handleItemDeletedChange,"change:visible":this._handleItemVisibleChange,"change:purged":function(e){this.model.fetch()},"fetching-deleted":function(e){this.$("> .controls .deleted-count").html(""+v("loading...")+"")},"fetching-hidden":function(e){this.$("> .controls .hidden-count").html(""+v("loading...")+"")},"fetching-deleted-done fetching-hidden-done":this._renderCounts}),this},_buildNewRender:function(){var e=_.prototype._buildNewRender.call(this);return this.model?(Galaxy&&Galaxy.user&&Galaxy.user.id&&Galaxy.user.id===this.model.get("user_id")&&(this._renderTags(e),this._renderAnnotation(e)),e):e},updateHistoryDiskSize:function(){this.$(".history-size").text(this.model.get("nice_size"))},renderItems:function(e){var t=_.prototype.renderItems.call(this,e);return this.searchFor||this._renderCounts(e),t},_renderCounts:function(e){e=e instanceof a?e:this.$el;var t=this.templates.counts(this.model.toJSON(),this);return e.find("> .controls .subtitle").html(t)},_renderTags:function(e){var t=this;this.tagsEditor=new d.TagsEditor({model:this.model,el:e.find(".controls .tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.toggleHDATagEditors(!0,t.fxSpeed)},onhide:function(){t.toggleHDATagEditors(!1,t.fxSpeed)},$activator:g({title:v("Edit history tags"),classes:"history-tag-btn",faIcon:"fa-tags"}).appendTo(e.find(".controls .actions"))})},_renderAnnotation:function(e){var t=this;this.annotationEditor=new c.AnnotationEditor({model:this.model,el:e.find(".controls .annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.toggleHDAAnnotationEditors(!0,t.fxSpeed)},onhide:function(){t.toggleHDAAnnotationEditors(!1,t.fxSpeed)},$activator:g({title:v("Edit history annotation"),classes:"history-annotate-btn",faIcon:"fa-comment"}).appendTo(e.find(".controls .actions"))})},_setUpBehaviors:function(e){if(e=e||this.$el,_.prototype._setUpBehaviors.call(this,e),this.model&&Galaxy.user&&!Galaxy.user.isAnonymous()&&Galaxy.user.id===this.model.get("user_id")){var t=this,i="> .controls .name";e.find(i).attr("title",v("Click to rename history")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(e){var n=t.model.get("name");e&&e!==n?(t.$el.find(i).text(e),t.model.save({name:e}).fail(function(){t.$el.find(i).text(t.model.previous("name"))})):t.$el.find(i).text(n)}})}},multiselectActions:function(){var e=this,t=[{html:v("Hide datasets"),func:function(){var t=n.HistoryDatasetAssociation.prototype.hide;e.getSelectedModels().ajaxQueue(t)}},{html:v("Unhide datasets"),func:function(){var t=n.HistoryDatasetAssociation.prototype.unhide;e.getSelectedModels().ajaxQueue(t)}},{html:v("Delete datasets"),func:function(){var t=n.HistoryDatasetAssociation.prototype.delete;e.getSelectedModels().ajaxQueue(t)}},{html:v("Undelete datasets"),func:function(){var t=n.HistoryDatasetAssociation.prototype.undelete;e.getSelectedModels().ajaxQueue(t)}}];return e.purgeAllowed&&t.push({html:v("Permanently delete datasets"),func:function(){if(confirm(v("This will permanently remove the data in your datasets. Are you sure?"))){var t=n.HistoryDatasetAssociation.prototype.purge;e.getSelectedModels().ajaxQueue(t)}}}),t=t.concat(e._collectionActions())},_collectionActions:function(){var e=this;return[{html:v("Build Dataset List"),func:function(){h.createListCollection(e.getSelectedModels()).done(function(){e.model.refresh()})}},{html:v("Build Dataset Pair"),func:function(){u.createPairCollection(e.getSelectedModels()).done(function(){e.model.refresh()})}},{html:v("Build List of Dataset Pairs"),func:function(){p.createListOfPairsCollection(e.getSelectedModels()).done(function(){e.model.refresh()})}}]},_getItemViewOptions:function(e){var t=_.prototype._getItemViewOptions.call(this,e);return o.extend(t,{purgeAllowed:this.purgeAllowed,tagsEditorShown:this.tagsEditor&&!this.tagsEditor.hidden,annotationEditorShown:this.annotationEditor&&!this.annotationEditor.hidden}),t},_handleItemDeletedChange:function(e){e.get("deleted")?this._handleItemDeletion(e):this._handleItemUndeletion(e),this._renderCounts()},_handleItemDeletion:function(e){var t=this.model.get("contents_active");t.deleted+=1,t.active-=1,this.model.contents.includeDeleted||this.removeItemView(e),this.model.set("contents_active",t)},_handleItemUndeletion:function(e){var t=this.model.get("contents_active");t.deleted-=1,this.model.contents.includeDeleted||(t.active-=1),this.model.set("contents_active",t)},_handleItemVisibleChange:function(e){e.hidden()?this._handleItemHidden(e):this._handleItemUnhidden(e),this._renderCounts()},_handleItemHidden:function(e){var t=this.model.get("contents_active");t.hidden+=1,t.active-=1,this.model.contents.includeHidden||this.removeItemView(e),this.model.set("contents_active",t)},_handleItemUnhidden:function(e){var t=this.model.get("contents_active");t.hidden-=1,this.model.contents.includeHidden||(t.active-=1),this.model.set("contents_active",t)},toggleHDATagEditors:function(e,t){o.each(this.views,function(i){i.tagsEditor&&i.tagsEditor.toggle(e,t)})},toggleHDAAnnotationEditors:function(e,t){o.each(this.views,function(i){i.annotationEditor&&i.annotationEditor.toggle(e,t)})},events:o.extend(o.clone(_.prototype.events),{"click .show-selectors-btn":"toggleSelectors","click .toggle-deleted-link":function(e){this.toggleShowDeleted()},"click .toggle-hidden-link":function(e){this.toggleShowHidden()}}),_renderSearchProgress:function(e,t){var i=e+t;return this.$("> .controls .subtitle").html(["",v("Searching "),i,"/",this.model.contentsShown(),""].join(""))},_renderSearchFindings:function(){return this.$("> .controls .subtitle").html([v("Found"),this.views.length].join(" ")),this},dropTargetOn:function(){if(this.dropTarget)return this;this.dropTarget=!0;var e={dragenter:o.bind(this.dragenter,this),dragover:o.bind(this.dragover,this),dragleave:o.bind(this.dragleave,this),drop:o.bind(this.drop,this)},t=this._renderDropTarget();this.$list().before([this._renderDropTargetHelp(),t]);for(var i in e)e.hasOwnProperty(i)&&t.on(i,e[i]);return this},_renderDropTarget:function(){return this.$(".history-drop-target").remove(),r("
            ").addClass("history-drop-target")},_renderDropTargetHelp:function(){return this.$(".history-drop-target-help").remove(),r("
            ").addClass("history-drop-target-help").text(v("Drag datasets here to copy them to the current history"))},dropTargetOff:function(){if(!this.dropTarget)return this;this.dropTarget=!1;var e=this.$(".history-drop-target").get(0);for(var t in this._dropHandlers)this._dropHandlers.hasOwnProperty(t)&&e.off(t,this._dropHandlers[t]);return this.$(".history-drop-target").remove(),this.$(".history-drop-target-help").remove(),this},dropTargetToggle:function(){return this.dropTarget?this.dropTargetOff():this.dropTargetOn(),this},dragenter:function(e){e.preventDefault(),e.stopPropagation(),this.$(".history-drop-target").css("border","2px solid black")},dragover:function(e){e.preventDefault(),e.stopPropagation()},dragleave:function(e){e.preventDefault(),e.stopPropagation(),this.$(".history-drop-target").css("border","1px dashed black")},drop:function(e){e.preventDefault();var t=this,i=e.originalEvent.dataTransfer,n=i.getData("text");i.dropEffect="move";try{n=JSON.parse(n)}catch(e){t.warn("error parsing JSON from drop:",n)}return t.trigger("droptarget:drop",e,n,t),!1},dataDropped:function(e){var t=this;return o.isObject(e)&&"HistoryDatasetAssociation"===e.model_class&&e.id?0!==t.contents.currentPage?t.contents.fetchPage(0).then(function(){return t.model.contents.copy(e.id)}):t.model.contents.copy(e.id):a.when()},toString:function(){return"HistoryViewEdit("+(this.model?this.model.get("name"):"")+")"}});return y.prototype.templates=function(){var e=m.wrapTemplate(["<% var shown = Math.max( view.views.length, history.contents_active.active ) %>","<% if( shown ){ %>",'',"<%- shown %> ",v("shown"),"","<% } %>","<% if( history.contents_active.deleted ){ %>",'',"<% if( view.model.contents.includeDeleted ){ %>",'',v("hide deleted"),"","<% } else { %>","<%- history.contents_active.deleted %> ",'',v("deleted"),"","<% } %>","","<% } %>","<% if( history.contents_active.hidden ){ %>",'',"<% if( view.model.contents.includeHidden ){ %>",'',v("hide hidden"),"","<% } else { %>","<%- history.contents_active.hidden %> ",'',v("hidden"),"","<% } %>","","<% } %>"],"history");return o.extend(o.clone(_.prototype.templates),{counts:e})}(),{HistoryViewEdit:y}}.apply(t,n),!(void 0!==s&&(e.exports=s))}).call(t,i(1),i(2),i(1))},function(e,t,i){var n,s;(function(a,o){n=[i(76),i(75),i(42),i(43),i(71),i(73),i(83),i(79),i(22),i(6),i(5),i(86)],s=function(e,t,i,n,s,r,l,d,c,h,u){"use strict";var p=e.ModelListPanel,g=p.extend({_logNamespace:"history",HDAViewClass:s.HDAListItemView,HDCAViewClass:r.HDCAListItemView,collectionClass:i.HistoryContents,modelCollectionKey:"contents",tagName:"div",className:p.prototype.className+" history-panel",emptyMsg:u("This history is empty"),noneFoundMsg:u("No matching datasets found"),searchPlaceholder:u("search datasets"),FETCH_COLLECTION_COUNTS_DELAY:2e3,initialize:function(e){p.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank"},_createDefaultCollection:function(){return new this.collectionClass([],{history:this.model})},freeModel:function(){return p.prototype.freeModel.call(this),this.model&&this.model.clearUpdateTimeout(),this},_setUpListeners:function(){p.prototype._setUpListeners.call(this),this.on({error:function(e,t,i,n,s){this.errorHandler(e,t,i,n,s)},"loading-done":function(){var e=this;a.delay(function(){e.model.contents.fetchCollectionCounts()},e.FETCH_COLLECTION_COUNTS_DELAY)},"views:ready view:attached view:removed":function(e){this._renderSelectButton()},"view:attached":function(e){this.scrollTo(0)}})},loadHistory:function(e,i,n){n=a.extend(n||{silent:!0}),this.info("loadHistory:",e,i,n);var s=this;return s.setModel(new t.History({id:e})),n.silent=!0,s.trigger("loading"),s.model.fetchWithContents(i,n).always(function(){s.render(),s.trigger("loading-done")})},refreshContents:function(e){return this.model?this.model.refresh(e):o.when()},_setUpCollectionListeners:function(){return p.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,{"fetching-more":function(){this._toggleContentsLoadingIndicator(!0),this.$emptyMessage().hide()},"fetching-more-done":function(){this._toggleContentsLoadingIndicator(!1)}})},_showLoadingIndicator:function(e,t,i){var n=o('
            ');this.$el.html(n.text(e).slideDown(a.isUndefined(t)?this.fxSpeed:t))},_hideLoadingIndicator:function(e){this.$(".loading-indicator").slideUp(a.isUndefined(e)?this.fxSpeed+200:e,function(){o(this).remove()})},_buildNewRender:function(){var e=p.prototype._buildNewRender.call(this);return this._renderSelectButton(e),e},_renderSelectButton:function(e){if(e=e||this.$el,!this.multiselectActions().length)return null;if(!this.views.length)return this.hideSelectors(),e.find(".controls .actions .show-selectors-btn").remove(),null;var t=e.find(".controls .actions .show-selectors-btn");return t.length?t:c({title:u("Operations on multiple datasets"),classes:"show-selectors-btn",faIcon:"fa-check-square-o"}).prependTo(e.find(".controls .actions"))},_renderEmptyMessage:function(e){var t=this,i=t.$emptyMessage(e),n=t.model.get("contents_active").active<=0;return n?i.empty().append(t.emptyMsg).show():t.searchFor&&t.model.contents.haveSearchDetails()&&!t.views.length?i.empty().append(t.noneFoundMsg).show():(i.hide(),o())},$scrollContainer:function(e){return this.$list(e)},_toggleContentsLoadingIndicator:function(e){e?this.$list().html('
            '):this.$list().find(".contents-loading-indicator").remove()},renderItems:function(e){e=e||this.$el;var t=this,i=t.$list(e);o(".tooltip").remove(),i.empty(),t.views=[];var n=t._filterCollection();return n.length?(t._renderPagination(e),t.views=t._renderSomeItems(n,i)):e.find("> .controls .list-pagination").empty(),t._renderEmptyMessage(e).toggle(!n.length),t.trigger("views:ready",t.views),t.views},_renderPagination:function(e){var t=e.find("> .controls .list-pagination");return this.searchFor||!this.model.contents.shouldPaginate()?t.empty():(t.html(this.templates.pagination({current:this.model.contents.currentPage+1,last:this.model.contents.getLastPage()+1},this)),t.find("select.pages").tooltip(),t)},_renderSomeItems:function(e,t){var i=this,n=[];return t.append(e.map(function(e){var t=i._createItemView(e);return n.push(t),i._renderItemView$el(t)})),n},_filterItem:function(e){var t=this,i=t.model.contents;return(i.includeHidden||!e.hidden())&&(i.includeDeleted||!e.isDeletedOrPurged())&&p.prototype._filterItem.call(t,e)},_getItemViewClass:function(e){var t=e.get("history_content_type");switch(t){case"dataset":return this.HDAViewClass;case"dataset_collection":return this.HDCAViewClass}throw new TypeError("Unknown history_content_type: "+t)},_getItemViewOptions:function(e){var t=p.prototype._getItemViewOptions.call(this,e);return a.extend(t,{linkTarget:this.linkTarget,expanded:this.model.contents.storage.isExpanded(e.id),hasUser:this.model.ownedByCurrUser()})},_setUpItemViewListeners:function(e){var t=this;return p.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{expanded:function(e){t.model.contents.storage.addExpanded(e.model)},collapsed:function(e){t.model.contents.storage.removeExpanded(e.model)}})},collapseAll:function(){this.model.contents.storage.clearExpanded(),p.prototype.collapseAll.call(this)},getSelectedModels:function(){var e=p.prototype.getSelectedModels.call(this);return e.historyId=this.collection.historyId,e},events:a.extend(a.clone(p.prototype.events),{"click .show-selectors-btn":"toggleSelectors","click > .controls .prev":"_clickPrevPage","click > .controls .next":"_clickNextPage","change > .controls .pages":"_changePageSelect","click .messages [class$=message]":"clearMessages"}),_clickPrevPage:function(e){this.model.clearUpdateTimeout(),this.model.contents.fetchPrevPage()},_clickNextPage:function(e){this.model.clearUpdateTimeout(),this.model.contents.fetchNextPage()},_changePageSelect:function(e){this.model.clearUpdateTimeout();var t=o(e.currentTarget).val();this.model.contents.fetchPage(t)},toggleShowDeleted:function(e,t){e=void 0!==e?e:!this.model.contents.includeDeleted;var i=this,n=i.model.contents;return n.setIncludeDeleted(e,t),i.trigger("show-deleted",e),n.fetchCurrentPage({renderAll:!0}),e},toggleShowHidden:function(e,t,i){e=void 0!==e?e:!this.model.contents.includeHidden;var n=this,s=n.model.contents;return s.setIncludeHidden(e,i),n.trigger("show-hidden",e),s.fetchCurrentPage({renderAll:!0}),e},_firstSearch:function(e){var t=this,i="> .controls .search-input";if(this.log("onFirstSearch",e),t.model.contents.haveSearchDetails())return void t.searchItems(e);t.$(i).searchInput("toggle-loading"),t.searchFor=e;t.model.contents.progressivelyFetchDetails({silent:!0}).progress(function(e,i,n){t.renderItems(),t.trigger("search:loading-progress",i,n)}).always(function(){t.$el.find(i).searchInput("toggle-loading")}).done(function(){t.searchItems(e,"force")})},clearSearch:function(e){var t=this;return t.searchFor?(t.searchFor="",t.trigger("search:clear",t),t.$("> .controls .search-query").val(""),t.model.contents.fetchCurrentPage({silent:!0}).done(function(){t.renderItems()}),t):t},errorHandler:function(e,t,i){if(!t||0!==t.status||0!==t.readyState){if(this.error(e,t,i),a.isString(e)&&a.isString(t)){var n=e,s=t;return d.errorModal(n,s,i)}return t&&502===t.status?d.badGatewayErrorModal():d.ajaxErrorModal(e,t,i)}},clearMessages:function(e){var t=a.isUndefined(e)?this.$messages().children('[class$="message"]'):o(e.currentTarget);return t.fadeOut(this.fxSpeed,function(){o(this).remove()}),this},scrollToHid:function(e){return this.scrollToItem(a.first(this.viewsWhereModel({hid:e})))},ordinalIndicator:function(e){var t=e+"";switch(t.charAt(t.length-1)){case"1":return t+"st";case"2":return t+"nd";case"3":return t+"rd";default:return t+"th"}},toString:function(){return"HistoryView("+(this.model?this.model.get("name"):"")+")"}});return g.prototype.templates=function(){var e=h.wrapTemplate(["
            ",'
            ','
              ','
              ',"
              "]),t=h.wrapTemplate(['
              ','
              ','
              <%- history.name %>
              ',"
              ",'
              ','
              <%- history.nice_size %>
              ','
              ','
              ',"<% if( history.deleted && history.purged ){ %>",'
              ',u("This history has been purged and deleted"),"
              ","<% } else if( history.deleted ){ %>",'
              ',u("This history has been deleted"),"
              ","<% } else if( history.purged ){ %>",'
              ',u("This history has been purged"),"
              ","<% } %>","<% if( history.message ){ %>",'
              messagesmall">',"<%= history.message.text %>","
              ","<% } %>","
              ",'
              ','
              ','
              ','
              ',"
              ",'
              ','
              ','",'","
              ",'
              ',"
              ","
              ",'
              ',"
              "],"history"),i=h.wrapTemplate(['','",''],"pages");return a.extend(a.clone(p.prototype.templates),{el:e,controls:t,pagination:i})}(),{HistoryView:g}}.apply(t,n),!(void 0!==s&&(e.exports=s))}).call(t,i(2),i(1))},function(e,t,i){var n,s;(function(a,o){n=[i(80),i(111),i(6),i(5),i(28)],s=function(e,t,i,n,s){"use strict";function r(e,t,i){return o.clone(l).filter(function(n){return!(e&&!n.anon)&&(!(!t&&n.purge)&&(n.href&&(n.href=i+n.href,n.target="galaxy_main"),n.confirm&&(n.func=function(){confirm(n.confirm)&&(galaxy_main.location=n.href)}),!0))})}var l=[{html:n("History Lists"),header:!0},{html:n("Saved Histories"),href:"history/list"},{html:n("Histories Shared with Me"),href:"history/list_shared"},{html:n("Current History"),header:!0,anon:!0},{html:n("Create New"),func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.createNewHistory()}},{html:n("Copy History"),func:function(){t(Galaxy.currHistoryPanel.model).done(function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:n("Share or Publish"),href:"history/sharing"},{html:n("Show Structure"),href:"history/display_structured",anon:!0},{html:n("Extract Workflow"),href:"workflow/build_from_current_history"},{html:n("Delete"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm(n("Really delete the current history?"))&&(galaxy_main.window.location.href="history/delete?id="+Galaxy.currHistoryPanel.model.id)}},{html:n("Delete Permanently"),purge:!0,anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm(n("Really delete the current history permanently? This cannot be undone."))&&(galaxy_main.window.location.href="history/delete?purge=True&id="+Galaxy.currHistoryPanel.model.id)}},{html:n("Dataset Actions"),header:!0,anon:!0},{html:n("Copy Datasets"),href:"dataset/copy_datasets"},{html:n("Dataset Security"),href:"root/history_set_default_permissions"},{html:n("Resume Paused Jobs"),href:"history/resume_paused_jobs?current=True",anon:!0},{html:n("Collapse Expanded Datasets"),func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.collapseAll()}},{html:n("Unhide Hidden Datasets"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm(n("Really unhide all hidden datasets?"))&&a.post(Galaxy.root+"history/adjust_hidden",{user_action:"unhide"},function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:n("Delete Hidden Datasets"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm(n("Really delete all hidden datasets?"))&&a.post(Galaxy.root+"history/adjust_hidden",{user_action:"delete"},function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:n("Purge Deleted Datasets"),confirm:n("Really delete all deleted datasets permanently? This cannot be undone."),href:"history/purge_deleted_datasets",purge:!0,anon:!0},{html:n("Downloads"),header:!0},{html:n("Export Tool Citations"),href:"history/citations",anon:!0},{html:n("Export History to File"),href:"history/export_archive?preview=True",anon:!0},{html:n("Other Actions"),header:!0},{html:n("Import from File"),href:"history/import_archive"}];s.add({url:"api/webhooks/history-menu/all",async:!1,callback:function(e){var t=[];a.each(e.models,function(e,i){var s=i.toJSON();s.activate&&t.push({html:n(s.config.title),anon:!0})}),t.length>0&&(t.unshift({html:n("Webhooks"),header:!0}),a.merge(l,t))}});var d=function(t,i){i=i||{};var n=void 0===i.anonymous||i.anonymous,s=i.purgeAllowed||!1,a=r(n,s,Galaxy.root);return new e(t,a)};return d}.apply(t,n),!(void 0!==s&&(e.exports=s))}).call(t,i(1),i(2))},function(e,t,i){var n,s;(function(a,o){n=[i(4)],s=function(e){var t=a.View.extend({initialize:function(e){this.collection=new a.Collection,this.model=e&&e.model||new a.Model({onchange:null,visible:!0}).set(e),this.setElement(o(this._template())),this.$nav=this.$(".tab-navigation"),this.$content=this.$(".tab-content"),this.$el.on("click",function(){o(".tooltip").hide()}),this.render(),this.listenTo(this.model,"change",this.render,this),this.listenTo(this.collection,"add",this._add,this),this.listenTo(this.collection,"remove",this._remove,this),this.listenTo(this.collection,"change",this._change,this),this.listenTo(this.collection,"reset",this._reset,this),this.listenTo(this.collection,"add remove reset",this.render,this)},render:function(){var e=this.model.get("current");e=this.$("#"+e).length>0?e:this.first(),e&&(this.$nav.children().removeClass("active"),this.$content.children().removeClass("active"),this.$("#tab-"+e).addClass("active"),this.$("#"+e).addClass("active")),this.$el[this.model.get("visible")?"fadeIn":"fadeOut"]("fast"),this.$nav[this.size()>1?"show":"hide"]()},current:function(){return this.model.get("current")},show:function(e){e&&(this.model.set({current:e,visible:!0}),this.model.get("onchange")&&this.model.get("onchange")(e))},hide:function(){this.model.set("visible",!1)},first:function(){var e=this.collection.first();return e&&e.id},size:function(){return this.collection.length; },add:function(e){this.collection.add(e)},del:function(e){this.collection.remove(e)},delAll:function(){this.collection.reset()},showTab:function(e){this.collection.get(e).set("hidden",!1)},hideTab:function(e){this.collection.get(e).set("hidden",!0)},_add:function(e){var t=this,i=e.attributes;this.$content.append(o("
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              ").addClass("ui-tabs tabbable tabs-left").append(o("