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Merge pull request #14373 from cat-bro/fix-IMPLICITLY_REQUIRED_TOOL_FILES-for-maxquant

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[22.01] Correct IMPLICITLY_REQUIRED_TOOL_FILES for some tools
This commit is contained in:
Marius van den Beek
2022-07-26 14:26:15 +02:00
committed by GitHub
parent a20d79643c 25e847e814
commit 6c43d6664f
1 changed files with 5 additions and 5 deletions
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lib/galaxy/tools/__init__.py
+5 -5
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@@ -222,20 +222,20 @@ IMPLICITLY_REQUIRED_TOOL_FILES: Dict[str, Dict] = {
# "foobar": {"required": REQUIRE_FULL_DIRECTORY}
# if no version is specified, all versions without explicit RequiredFiles will be selected
"circos": {"required": REQUIRE_FULL_DIRECTORY},
"cp_image_math": {"required": {"includes": [{"path": "cp_common_functions.py", "path_type": "literal"}]}},
"enumerate_charges": {"required": {"includes": [{"path": "site_substructures.smarts", "path_type": "literal"}]}},
"cp_image_math": {"required": {"includes": [{"path": "*.py", "path_type": "glob"}]}},
"enumerate_charges": {"required": REQUIRE_FULL_DIRECTORY},
"fasta_compute_length": {"required": {"includes": [{"path": "utils/*", "path_type": "glob"}]}},
"fasta_concatenate0": {"required": {"includes": [{"path": "utils/*", "path_type": "glob"}]}},
"filter_tabular": {"required": {"includes": [{"path": "*.py", "path_type": "glob"}]}},
"flanking_features_1": {"required": {"includes": [{"path": "utils/*", "path_type": "glob"}]}},
"gops_intersect_1": {"required": {"includes": [{"path": "utils/*", "path_type": "glob"}]}},
"gops_subtract_1": {"required": {"includes": [{"path": "utils/*", "path_type": "glob"}]}},
"maxquant": {"required": {"includes": [{"path": "mqparam.py", "path_type": "literal"}]}},
"maxquant_mqpar": {"required": {"includes": [{"path": "mqparam.py", "path_type": "literal"}]}},
"maxquant": {"required": {"includes": [{"path": "*.py", "path_type": "glob"}]}},
"maxquant_mqpar": {"required": {"includes": [{"path": "*.py", "path_type": "glob"}]}},
"query_tabular": {"required": {"includes": [{"path": "*.py", "path_type": "glob"}]}},
"shasta": {"required": {"includes": [{"path": "configs/*", "path_type": "glob"}]}},
"sqlite_to_tabular": {"required": {"includes": [{"path": "*.py", "path_type": "glob"}]}},
"sucos_max_score": {"required": {"includes": [{"path": "utils.py", "path_type": "literal"}]}},
"sucos_max_score": {"required": {"includes": [{"path": "*.py", "path_type": "glob"}]}},
}