diff --git a/lib/galaxy/tools/__init__.py b/lib/galaxy/tools/__init__.py index e1359d5a839..15b1e61332f 100644 --- a/lib/galaxy/tools/__init__.py +++ b/lib/galaxy/tools/__init__.py @@ -222,20 +222,20 @@ IMPLICITLY_REQUIRED_TOOL_FILES: Dict[str, Dict] = { # "foobar": {"required": REQUIRE_FULL_DIRECTORY} # if no version is specified, all versions without explicit RequiredFiles will be selected "circos": {"required": REQUIRE_FULL_DIRECTORY}, - "cp_image_math": {"required": {"includes": [{"path": "cp_common_functions.py", "path_type": "literal"}]}}, - "enumerate_charges": {"required": {"includes": [{"path": "site_substructures.smarts", "path_type": "literal"}]}}, + "cp_image_math": {"required": {"includes": [{"path": "*.py", "path_type": "glob"}]}}, + "enumerate_charges": {"required": REQUIRE_FULL_DIRECTORY}, "fasta_compute_length": {"required": {"includes": [{"path": "utils/*", "path_type": "glob"}]}}, "fasta_concatenate0": {"required": {"includes": [{"path": "utils/*", "path_type": "glob"}]}}, "filter_tabular": {"required": {"includes": [{"path": "*.py", "path_type": "glob"}]}}, "flanking_features_1": {"required": {"includes": [{"path": "utils/*", "path_type": "glob"}]}}, "gops_intersect_1": {"required": {"includes": [{"path": "utils/*", "path_type": "glob"}]}}, "gops_subtract_1": {"required": {"includes": [{"path": "utils/*", "path_type": "glob"}]}}, - "maxquant": {"required": {"includes": [{"path": "mqparam.py", "path_type": "literal"}]}}, - "maxquant_mqpar": {"required": {"includes": [{"path": "mqparam.py", "path_type": "literal"}]}}, + "maxquant": {"required": {"includes": [{"path": "*.py", "path_type": "glob"}]}}, + "maxquant_mqpar": {"required": {"includes": [{"path": "*.py", "path_type": "glob"}]}}, "query_tabular": {"required": {"includes": [{"path": "*.py", "path_type": "glob"}]}}, "shasta": {"required": {"includes": [{"path": "configs/*", "path_type": "glob"}]}}, "sqlite_to_tabular": {"required": {"includes": [{"path": "*.py", "path_type": "glob"}]}}, - "sucos_max_score": {"required": {"includes": [{"path": "utils.py", "path_type": "literal"}]}}, + "sucos_max_score": {"required": {"includes": [{"path": "*.py", "path_type": "glob"}]}}, }