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Corrected old directions on several tools.

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This commit is contained in:
Greg Von Kuster
2008-03-13 20:46:43 +00:00
parent 89bb493d3c
commit 69a20f0fa7
15 changed files with 19 additions and 17 deletions
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tools/extract/extract_genomic_dna.xml
+1 -1
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@@ -35,7 +35,7 @@
.. class:: warningmark
This tool requires tabular formatted data. If your data is not TAB delimited, use *Edit Queries->Convert characters*.
This tool requires tabular formatted data. If your data is not TAB delimited, use *Text Manipulation->Convert*.
.. class:: warningmark
tools/fasta_tools/tabular_to_fasta.xml
+1 -3
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@@ -3,9 +3,7 @@
<command interpreter="python">tabular_to_fasta.py $input $title_col $seq_col $output </command>
<inputs>
<param name="input" type="data" format="tabular" label="Tab-delimited file"/>
<param name="title_col" type="data_column" data_ref="input" multiple="True" numerical="False" label="Title column(s)" help="Multi-select list - hold the appropriate key while clicking to select multiple columns">
<validator type="no_options" message="No title column selected"/>
</param>
<param name="title_col" type="data_column" data_ref="input" multiple="True" numerical="False" label="Title column(s)" help="Multi-select list - hold the appropriate key while clicking to select multiple columns"/>
<param name="seq_col" type="data_column" data_ref="input" numerical="False" label="Sequence column" />
</inputs>
<outputs>
tools/filters/compare.xml
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@@ -28,7 +28,7 @@
.. class:: infomark
**TIP:** If your data is not TAB delimited, use *Edit Queries-&gt;Convert characters*
**TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert*
-----
tools/filters/fixedValueColumn.xml
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@@ -24,7 +24,7 @@
.. class:: infomark
**TIP:** If your data is not TAB delimited, use *Edit Queries-&gt;Convert characters*
**TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert*
-----
tools/filters/grep.xml
+1 -1
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@@ -24,7 +24,7 @@
.. class:: infomark
**TIP:** If your data is not TAB delimited, use *Edit Queries-&gt;Convert characters*
**TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert*
-----
tools/filters/joiner.xml
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@@ -46,7 +46,7 @@
.. class:: infomark
**TIP:** If your data is not TAB delimited, use *Edit Queries-&gt;Convert characters*
**TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert*
-----
tools/filters/sorter.xml
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@@ -36,7 +36,7 @@
.. class:: infomark
**TIP:** If your data is not TAB delimited, use *Edit Queries-&gt;Convert characters*
**TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert*
-----
tools/filters/uniq.xml
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@@ -29,7 +29,7 @@
.. class:: infomark
**TIP:** If your data is not TAB delimited, use *Edit Queries-&gt;Convert characters*
**TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert*
-----
tools/plotting/histogram2.xml
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@@ -14,9 +14,13 @@
</outputs>
<help>
.. class:: infomark
**TIP:** To remove comment lines that do not begin with a *#* character, use *Text Manipulation-&gt;Remove beginning*
.. class:: infomark
**TIP:** If your data is not TAB delimited, use *Edit Queries-&gt;Convert characters*
**TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert*
-----
tools/plotting/scatterplot.xml
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@@ -16,7 +16,7 @@
.. class:: infomark
**TIP:** If your data is not TAB delimited, use *Edit Queries-&gt;Convert characters*
**TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert*
-----
tools/stats/column_maker.xml
+1 -1
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@@ -28,7 +28,7 @@
.. class:: infomark
**TIP:** If your data is not TAB delimited, use *Edit Queries-&gt;Convert characters*
**TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert*
-----
tools/stats/cor.xml
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@@ -28,7 +28,7 @@
.. class:: infomark
**TIP:** If your data is not TAB delimited, use *Edit Queries-&gt;Convert characters*
**TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert*
.. class:: warningmark
tools/stats/filtering.xml
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@@ -34,7 +34,7 @@ Double equal signs, ==, must be used as *"equal to"* (e.g., **c1 == 'chr22'**)
.. class:: infomark
**TIP:** If your data is not TAB delimited, use *Edit Queries-&gt;Convert characters*
**TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert*
-----
tools/stats/grouping.xml
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@@ -59,7 +59,7 @@
.. class:: infomark
**TIP:** If your data is not TAB delimited, use *Edit Queries-&gt;Convert characters*
**TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert*
-----
tools/stats/gsummary.xml.groups
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@@ -18,7 +18,7 @@ This tool expects input datasets to consist of tab-delimited columns (blank or c
.. class:: infomark
**TIP:** If your data is not TAB delimited, use *Edit Queries-&gt;Convert characters*
**TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert*
.. class:: infomark