diff --git a/tools/extract/extract_genomic_dna.xml b/tools/extract/extract_genomic_dna.xml index 8ec4b813242..13b1d569318 100644 --- a/tools/extract/extract_genomic_dna.xml +++ b/tools/extract/extract_genomic_dna.xml @@ -35,7 +35,7 @@ .. class:: warningmark -This tool requires tabular formatted data. If your data is not TAB delimited, use *Edit Queries->Convert characters*. +This tool requires tabular formatted data. If your data is not TAB delimited, use *Text Manipulation->Convert*. .. class:: warningmark diff --git a/tools/fasta_tools/tabular_to_fasta.xml b/tools/fasta_tools/tabular_to_fasta.xml index 86f6072695d..08de7d76504 100644 --- a/tools/fasta_tools/tabular_to_fasta.xml +++ b/tools/fasta_tools/tabular_to_fasta.xml @@ -3,9 +3,7 @@ tabular_to_fasta.py $input $title_col $seq_col $output - - - + diff --git a/tools/filters/compare.xml b/tools/filters/compare.xml index b18169c3333..fefc7a8bad6 100644 --- a/tools/filters/compare.xml +++ b/tools/filters/compare.xml @@ -28,7 +28,7 @@ .. class:: infomark -**TIP:** If your data is not TAB delimited, use *Edit Queries->Convert characters* +**TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* ----- diff --git a/tools/filters/fixedValueColumn.xml b/tools/filters/fixedValueColumn.xml index c45bdcfd90a..644659019db 100644 --- a/tools/filters/fixedValueColumn.xml +++ b/tools/filters/fixedValueColumn.xml @@ -24,7 +24,7 @@ .. class:: infomark -**TIP:** If your data is not TAB delimited, use *Edit Queries->Convert characters* +**TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* ----- diff --git a/tools/filters/grep.xml b/tools/filters/grep.xml index 068238af8b8..d6a1814ffb9 100644 --- a/tools/filters/grep.xml +++ b/tools/filters/grep.xml @@ -24,7 +24,7 @@ .. class:: infomark -**TIP:** If your data is not TAB delimited, use *Edit Queries->Convert characters* +**TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* ----- diff --git a/tools/filters/joiner.xml b/tools/filters/joiner.xml index c862cc5336b..1d866804a64 100644 --- a/tools/filters/joiner.xml +++ b/tools/filters/joiner.xml @@ -46,7 +46,7 @@ .. class:: infomark -**TIP:** If your data is not TAB delimited, use *Edit Queries->Convert characters* +**TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* ----- diff --git a/tools/filters/sorter.xml b/tools/filters/sorter.xml index 076bc5f390a..c67eb4472ea 100644 --- a/tools/filters/sorter.xml +++ b/tools/filters/sorter.xml @@ -36,7 +36,7 @@ .. class:: infomark -**TIP:** If your data is not TAB delimited, use *Edit Queries->Convert characters* +**TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* ----- diff --git a/tools/filters/uniq.xml b/tools/filters/uniq.xml index 76060b80f86..db19a2124b2 100644 --- a/tools/filters/uniq.xml +++ b/tools/filters/uniq.xml @@ -29,7 +29,7 @@ .. class:: infomark -**TIP:** If your data is not TAB delimited, use *Edit Queries->Convert characters* +**TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* ----- diff --git a/tools/plotting/histogram2.xml b/tools/plotting/histogram2.xml index dea68ba3b46..e6bc79f2b82 100644 --- a/tools/plotting/histogram2.xml +++ b/tools/plotting/histogram2.xml @@ -14,9 +14,13 @@ +.. class:: infomark + +**TIP:** To remove comment lines that do not begin with a *#* character, use *Text Manipulation->Remove beginning* + .. class:: infomark -**TIP:** If your data is not TAB delimited, use *Edit Queries->Convert characters* +**TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* ----- diff --git a/tools/plotting/scatterplot.xml b/tools/plotting/scatterplot.xml index 152cf850cbe..b67c7057026 100644 --- a/tools/plotting/scatterplot.xml +++ b/tools/plotting/scatterplot.xml @@ -16,7 +16,7 @@ .. class:: infomark -**TIP:** If your data is not TAB delimited, use *Edit Queries->Convert characters* +**TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* ----- diff --git a/tools/stats/column_maker.xml b/tools/stats/column_maker.xml index befee863d52..c0a17219c4d 100644 --- a/tools/stats/column_maker.xml +++ b/tools/stats/column_maker.xml @@ -28,7 +28,7 @@ .. class:: infomark -**TIP:** If your data is not TAB delimited, use *Edit Queries->Convert characters* +**TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* ----- diff --git a/tools/stats/cor.xml b/tools/stats/cor.xml index 2e52c396d52..f12d3ff6df9 100644 --- a/tools/stats/cor.xml +++ b/tools/stats/cor.xml @@ -28,7 +28,7 @@ .. class:: infomark -**TIP:** If your data is not TAB delimited, use *Edit Queries->Convert characters* +**TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* .. class:: warningmark diff --git a/tools/stats/filtering.xml b/tools/stats/filtering.xml index c9cf9af339b..f473f6b4f95 100644 --- a/tools/stats/filtering.xml +++ b/tools/stats/filtering.xml @@ -34,7 +34,7 @@ Double equal signs, ==, must be used as *"equal to"* (e.g., **c1 == 'chr22'**) .. class:: infomark -**TIP:** If your data is not TAB delimited, use *Edit Queries->Convert characters* +**TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* ----- diff --git a/tools/stats/grouping.xml b/tools/stats/grouping.xml index 7b82fb84697..546b99fdf39 100644 --- a/tools/stats/grouping.xml +++ b/tools/stats/grouping.xml @@ -59,7 +59,7 @@ .. class:: infomark -**TIP:** If your data is not TAB delimited, use *Edit Queries->Convert characters* +**TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* ----- diff --git a/tools/stats/gsummary.xml.groups b/tools/stats/gsummary.xml.groups index 74612ed8099..fc200b6dac9 100644 --- a/tools/stats/gsummary.xml.groups +++ b/tools/stats/gsummary.xml.groups @@ -18,7 +18,7 @@ This tool expects input datasets to consist of tab-delimited columns (blank or c .. class:: infomark -**TIP:** If your data is not TAB delimited, use *Edit Queries->Convert characters* +**TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* .. class:: infomark