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IGB can read over https just fine (but won't follow 307 Temporary Redirects). Remove strip_https flag from IGB external display applications.

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This commit is contained in:
Daniel Blankenberg
2014-07-28 16:25:07 -04:00
parent f53fd0310a
commit 63eb557a6f
7 changed files with 8 additions and 8 deletions
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display_applications/igb/bam.xml
+2 -2
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@@ -7,8 +7,8 @@
#set nm=$bam_file_for_name.name
${re.sub('\W',"_",nm)}
</param>
<param type="data" name="bai_file" url="${niceName}.bam.bai" metadata="bam_index" strip_https="True" />
<param type="data" name="bam_file" url="${niceName}.bam" strip_https="True" />
<param type="data" name="bai_file" url="${niceName}.bam.bai" metadata="bam_index" />
<param type="data" name="bam_file" url="${niceName}.bam" />
</link>
</display>
display_applications/igb/bb.xml
+1 -1
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@@ -8,7 +8,7 @@
#set nm=$bigbed_file_for_name.name
${re.sub('\W',"_",nm)}
</param>
<param type="data" name="bigbed_file" url="${niceName}.bigbed" strip_https="True" />
<param type="data" name="bigbed_file" url="${niceName}.bigbed" />
</link>
</display>
display_applications/igb/bed.xml
+1 -1
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@@ -8,7 +8,7 @@
#set nm=$bed_file_for_name.name
${re.sub('\W',"_",nm)}
</param>
<param type="data" name="bed_file" url="${niceName}.bed" strip_https="True" />
<param type="data" name="bed_file" url="${niceName}.bed" />
<param type="template" name="bioviz" strip="True" >
http://bioviz.org/igb/galaxy.html?version=${bed_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${bed_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${bed_file.url}&amp;query_url=${bed_file.url}&amp;server_url=galaxy
display_applications/igb/bedgraph.xml
+1 -1
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@@ -8,7 +8,7 @@
#set nm=$bedgraph_file_for_name.name
${re.sub('\W',"_",nm)}
</param>
<param type="data" name="bedgraph_file" url="${niceName}.bed.bedgraph" strip_https="True" />
<param type="data" name="bedgraph_file" url="${niceName}.bed.bedgraph" />
<param type="template" name="bioviz" strip="True" >
http://bioviz.org/igb/galaxy.html?version=${bedgraph_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${bedgraph_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${bedgraph_file.url}&amp;query_url=${bedgraph_file.url}&amp;server_url=galaxy
display_applications/igb/bigwig.xml
+1 -1
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@@ -8,7 +8,7 @@
#set nm=$bigwig_file_for_name.name
${re.sub('\W',"_",nm)}
</param>
<param type="data" name="bigwig_file" url="${niceName}.bigwig" strip_https="True" />
<param type="data" name="bigwig_file" url="${niceName}.bigwig" />
<!--<param type="template" name="position" strip="True" >
#set chrom, start, end = $bigwig_file.datatype.get_estimated_display_viewport( $bigwig_file )
#if $chrom is not None:
display_applications/igb/gtf.xml
+1 -1
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@@ -8,7 +8,7 @@
#set nm=$gtf_file_for_name.name
${re.sub('\W',"_",nm)}
</param>
<param type="data" name="gtf_file" url="${niceName}.gtf" strip_https="True" />
<param type="data" name="gtf_file" url="${niceName}.gtf" />
<param type="template" name="bioviz" strip="True" >
http://bioviz.org/igb/galaxy.html?version=${gtf_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${gtf_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${gtf_file.url}&amp;query_url=${gtf_file.url}&amp;server_url=galaxy
display_applications/igb/wig.xml
+1 -1
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@@ -8,7 +8,7 @@
#set nm=$wig_file_for_name.name
${re.sub('\W',"_",nm)}
</param>
<param type="data" name="wig_file" url="${niceName}.wig" strip_https="True" />
<param type="data" name="wig_file" url="${niceName}.wig" />
<param type="template" name="position" strip="True" >
#set chrom, start, end = $wig_file.datatype.get_estimated_display_viewport( $wig_file )
#if $chrom is not None: