From 63eb557a6fda0557eb633a7be0154d87f2d7ee21 Mon Sep 17 00:00:00 2001
From: Daniel Blankenberg <dan@bx.psu.edu>
Date: Mon, 28 Jul 2014 16:25:07 -0400
Subject: [PATCH] IGB can read over https just fine (but won't follow 307
 Temporary Redirects). Remove strip_https flag from IGB external display
 applications.

---
 display_applications/igb/bam.xml      | 4 ++--
 display_applications/igb/bb.xml       | 2 +-
 display_applications/igb/bed.xml      | 2 +-
 display_applications/igb/bedgraph.xml | 2 +-
 display_applications/igb/bigwig.xml   | 2 +-
 display_applications/igb/gtf.xml      | 2 +-
 display_applications/igb/wig.xml      | 2 +-
 7 files changed, 8 insertions(+), 8 deletions(-)

diff --git a/display_applications/igb/bam.xml b/display_applications/igb/bam.xml
index d05c94eea99..23bd363bae0 100644
--- a/display_applications/igb/bam.xml
+++ b/display_applications/igb/bam.xml
@@ -7,8 +7,8 @@
 			#set nm=$bam_file_for_name.name
 			${re.sub('\W',"_",nm)}
 		</param>
-		<param type="data" name="bai_file" url="${niceName}.bam.bai" metadata="bam_index" strip_https="True" />
-		<param type="data" name="bam_file" url="${niceName}.bam" strip_https="True" />
+		<param type="data" name="bai_file" url="${niceName}.bam.bai" metadata="bam_index" />
+		<param type="data" name="bam_file" url="${niceName}.bam" />
 	</link>
 
 </display>
diff --git a/display_applications/igb/bb.xml b/display_applications/igb/bb.xml
index 7383099d187..df4370dd777 100644
--- a/display_applications/igb/bb.xml
+++ b/display_applications/igb/bb.xml
@@ -8,7 +8,7 @@
             #set nm=$bigbed_file_for_name.name
             ${re.sub('\W',"_",nm)}
         </param>
-        <param type="data" name="bigbed_file" url="${niceName}.bigbed" strip_https="True" />
+        <param type="data" name="bigbed_file" url="${niceName}.bigbed" />
     </link>
 </display>
 
diff --git a/display_applications/igb/bed.xml b/display_applications/igb/bed.xml
index fe711196bdc..6ee4b5d834c 100644
--- a/display_applications/igb/bed.xml
+++ b/display_applications/igb/bed.xml
@@ -8,7 +8,7 @@
 			#set nm=$bed_file_for_name.name
 			${re.sub('\W',"_",nm)}
 		</param>
-		<param type="data" name="bed_file" url="${niceName}.bed" strip_https="True" />
+		<param type="data" name="bed_file" url="${niceName}.bed" />
 		
 		<param type="template" name="bioviz" strip="True" >
      		http://bioviz.org/igb/galaxy.html?version=${bed_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${bed_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${bed_file.url}&amp;query_url=${bed_file.url}&amp;server_url=galaxy
diff --git a/display_applications/igb/bedgraph.xml b/display_applications/igb/bedgraph.xml
index c3650dcaca8..912d0ca5e5c 100644
--- a/display_applications/igb/bedgraph.xml
+++ b/display_applications/igb/bedgraph.xml
@@ -8,7 +8,7 @@
 			#set nm=$bedgraph_file_for_name.name
 			${re.sub('\W',"_",nm)}
 		</param>
-		<param type="data" name="bedgraph_file" url="${niceName}.bed.bedgraph" strip_https="True" />
+		<param type="data" name="bedgraph_file" url="${niceName}.bed.bedgraph" />
 		
 		<param type="template" name="bioviz" strip="True" >
      		http://bioviz.org/igb/galaxy.html?version=${bedgraph_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${bedgraph_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${bedgraph_file.url}&amp;query_url=${bedgraph_file.url}&amp;server_url=galaxy
diff --git a/display_applications/igb/bigwig.xml b/display_applications/igb/bigwig.xml
index afe01626c44..d03fb103828 100644
--- a/display_applications/igb/bigwig.xml
+++ b/display_applications/igb/bigwig.xml
@@ -8,7 +8,7 @@
             #set nm=$bigwig_file_for_name.name
             ${re.sub('\W',"_",nm)}
         </param>
-        <param type="data" name="bigwig_file" url="${niceName}.bigwig" strip_https="True" />
+        <param type="data" name="bigwig_file" url="${niceName}.bigwig" />
         <!--<param type="template" name="position" strip="True" >
             #set chrom, start, end = $bigwig_file.datatype.get_estimated_display_viewport( $bigwig_file )
             #if $chrom is not None:
diff --git a/display_applications/igb/gtf.xml b/display_applications/igb/gtf.xml
index c2e8b5b0b74..7a4430d7637 100644
--- a/display_applications/igb/gtf.xml
+++ b/display_applications/igb/gtf.xml
@@ -8,7 +8,7 @@
             #set nm=$gtf_file_for_name.name
             ${re.sub('\W',"_",nm)}
         </param>
-        <param type="data" name="gtf_file" url="${niceName}.gtf" strip_https="True" />
+        <param type="data" name="gtf_file" url="${niceName}.gtf" />
         
         <param type="template" name="bioviz" strip="True" >
              http://bioviz.org/igb/galaxy.html?version=${gtf_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${gtf_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${gtf_file.url}&amp;query_url=${gtf_file.url}&amp;server_url=galaxy
diff --git a/display_applications/igb/wig.xml b/display_applications/igb/wig.xml
index 744a99d4aeb..04540138ed6 100644
--- a/display_applications/igb/wig.xml
+++ b/display_applications/igb/wig.xml
@@ -8,7 +8,7 @@
             #set nm=$wig_file_for_name.name
             ${re.sub('\W',"_",nm)}
         </param>
-        <param type="data" name="wig_file" url="${niceName}.wig" strip_https="True" />
+        <param type="data" name="wig_file" url="${niceName}.wig" />
         <param type="template" name="position" strip="True" >
             #set chrom, start, end = $wig_file.datatype.get_estimated_display_viewport( $wig_file )
             #if $chrom is not None: