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Merge branch 'lib-refactor-cleanup' into dev

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This commit is contained in:
Dannon Baker
2016-03-30 09:43:19 -04:00
parent 35767b1380 971b987f0b
commit 565f11f142
27 changed files with 448 additions and 332 deletions
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client/galaxy/scripts/mvc/library/library-folder-view.js
+98 -75
View File
@@ -211,84 +211,107 @@ var FolderView = Backbone.View.extend({
},
templateFolder : function(){
var tmpl_array = [];
// CONTAINER START
tmpl_array.push('<div class="library_style_container">');
tmpl_array.push(' <div id="library_toolbar">');
tmpl_array.push(' <button data-toggle="tooltip" data-placement="top" title="Modify library item" class="btn btn-default toolbtn_modify_dataset primary-button" type="button"><span class="fa fa-pencil"></span> Modify</span></button>');
tmpl_array.push(' <a href="#folders/<%- item.get("folder_id") %>/datasets/<%- item.id %>/permissions"><button data-toggle="tooltip" data-placement="top" title="Manage permissions" class="btn btn-default toolbtn_change_permissions primary-button" type="button"><span class="fa fa-group"></span> Permissions</span></button></a>');
tmpl_array.push(' <button data-toggle="tooltip" data-placement="top" title="Share dataset" class="btn btn-default toolbtn-share-dataset primary-button" type="button"><span class="fa fa-share"></span> Share</span></button>');
tmpl_array.push(' </div>');
tmpl_array.push(' <p>');
tmpl_array.push(' This dataset is unrestricted so everybody can access it. Just share the URL of this page. ');
tmpl_array.push(' <button data-toggle="tooltip" data-placement="top" title="Copy to clipboard" class="btn btn-default btn-copy-link-to-clipboard primary-button" type="button"><span class="fa fa-clipboard"></span> To Clipboard</span></button> ');
tmpl_array.push(' </p>');
tmpl_array.push('<div class="dataset_table">');
tmpl_array.push(' <table class="grid table table-striped table-condensed">');
tmpl_array.push(' <tr>');
tmpl_array.push(' <th scope="row" id="id_row" data-id="<%= _.escape(item.get("ldda_id")) %>">Name</th>');
tmpl_array.push(' <td><%= _.escape(item.get("name")) %></td>');
tmpl_array.push(' </tr>');
tmpl_array.push(' <% if (item.get("file_ext")) { %>');
tmpl_array.push(' <tr>');
tmpl_array.push(' <th scope="row">Data type</th>');
tmpl_array.push(' <td><%= _.escape(item.get("file_ext")) %></td>');
tmpl_array.push(' </tr>');
tmpl_array.push(' <% } %>');
tmpl_array.push(' </table>');
tmpl_array.push('</div>');
// CONTAINER END
tmpl_array.push('</div>');
return _.template(tmpl_array.join(''));
return _.template([
'<div class="library_style_container">',
'<div id="library_toolbar">',
'<button data-toggle="tooltip" data-placement="top" title="Modify library item" class="btn btn-default toolbtn_modify_dataset primary-button" type="button">',
'<span class="fa fa-pencil"/>',
'&nbsp;Modify',
'</button>',
'<a href="#folders/<%- item.get("folder_id") %>/datasets/<%- item.id %>/permissions">',
'<button data-toggle="tooltip" data-placement="top" title="Manage permissions" class="btn btn-default toolbtn_change_permissions primary-button" type="button">',
'<span class="fa fa-group"/>',
'&nbsp;Permissions',
'</button>',
'</a>',
'<button data-toggle="tooltip" data-placement="top" title="Share dataset" class="btn btn-default toolbtn-share-dataset primary-button" type="button">',
'<span class="fa fa-share"/>',
'&nbsp;Share',
'</span>',
'</button>',
'</div>',
'<p>',
'This dataset is unrestricted so everybody can access it. Just share the URL of this page. ',
'<button data-toggle="tooltip" data-placement="top" title="Copy to clipboard" class="btn btn-default btn-copy-link-to-clipboard primary-button" type="button">',
'<span class="fa fa-clipboard"/>',
'&nbsp;To Clipboard',
'</button> ',
'</p>',
'<div class="dataset_table">',
'<table class="grid table table-striped table-condensed">',
'<tr>',
'<th scope="row" id="id_row" data-id="<%= _.escape(item.get("ldda_id")) %>">',
'Name',
'</th>',
'<td>',
'<%= _.escape(item.get("name")) %>',
'</td>',
'</tr>',
'<% if (item.get("file_ext")) { %>',
'<tr>',
'<th scope="row">Data type</th>',
'<td>',
'<%= _.escape(item.get("file_ext")) %>',
'</td>',
'</tr>',
'<% } %>',
'</table>',
'</div>',
'</div>'
].join(''));
},
templateFolderPermissions : function(){
var tmpl_array = [];
// CONTAINER START
tmpl_array.push('<div class="library_style_container">');
tmpl_array.push(' <div id="library_toolbar">');
tmpl_array.push(' <a href="#/folders/<%= folder.get("parent_id") %>"><button data-toggle="tooltip" data-placement="top" title="Go back to the parent folder" class="btn btn-default primary-button" type="button"><span class="fa fa-caret-left fa-lg"></span> Parent folder</span></button></a>');
tmpl_array.push(' </div>');
tmpl_array.push('<h1>Folder: <%= _.escape(folder.get("name")) %></h1>');
tmpl_array.push('<div class="alert alert-warning">');
tmpl_array.push('<% if (is_admin) { %>');
tmpl_array.push('You are logged in as an <strong>administrator</strong> therefore you can manage any folder on this Galaxy instance. Please make sure you understand the consequences.');
tmpl_array.push('<% } else { %>');
tmpl_array.push('You can assign any number of roles to any of the following permission types. However please read carefully the implications of such actions.');
tmpl_array.push('<% }%>');
tmpl_array.push('</div>');
tmpl_array.push('<div class="dataset_table">');
tmpl_array.push('<h2>Folder permissions</h2>');
tmpl_array.push('<h4>Roles that can manage permissions on this folder</h4>');
tmpl_array.push('<div id="manage_perm" class="manage_perm roles-selection"></div>');
tmpl_array.push('<div class="alert alert-info roles-selection">User with <strong>any</strong> of these roles can manage permissions on this folder.</div>');
tmpl_array.push('<h4>Roles that can add items to this folder</h4>');
tmpl_array.push('<div id="add_perm" class="add_perm roles-selection"></div>');
tmpl_array.push('<div class="alert alert-info roles-selection">User with <strong>any</strong> of these roles can add items to this folder (folders and datasets).</div>');
tmpl_array.push('<h4>Roles that can modify this folder</h4>');
tmpl_array.push('<div id="modify_perm" class="modify_perm roles-selection"></div>');
tmpl_array.push('<div class="alert alert-info roles-selection">User with <strong>any</strong> of these roles can modify this folder (name, etc.).</div>');
tmpl_array.push('<button data-toggle="tooltip" data-placement="top" title="Save modifications" class="btn btn-default toolbtn_save_permissions primary-button" type="button"><span class="fa fa-floppy-o"></span> Save</span></button>');
tmpl_array.push('</div>');
// CONTAINER END
tmpl_array.push('</div>');
return _.template(tmpl_array.join(''));
return _.template([
'<div class="library_style_container">',
'<div id="library_toolbar">',
'<a href="#/folders/<%= folder.get("parent_id") %>">',
'<button data-toggle="tooltip" data-placement="top" title="Go back to the parent folder" class="btn btn-default primary-button" type="button">',
'<span class="fa fa-caret-left fa-lg"/>',
'&nbsp;Parent folder',
'</button>',
'</a>',
'</div>',
'<h1>',
'Folder: <%= _.escape(folder.get("name")) %>',
'</h1>',
'<div class="alert alert-warning">',
'<% if (is_admin) { %>',
'You are logged in as an <strong>administrator</strong> therefore you can manage any folder on this Galaxy instance. Please make sure you understand the consequences.',
'<% } else { %>',
'You can assign any number of roles to any of the following permission types. However please read carefully the implications of such actions.',
'<% }%>',
'</div>',
'<div class="dataset_table">',
'<h2>Folder permissions</h2>',
'<h4>',
'Roles that can manage permissions on this folder',
'</h4>',
'<div id="manage_perm" class="manage_perm roles-selection"/>',
'<div class="alert alert-info roles-selection">',
'User with <strong>any</strong> of these roles can manage permissions on this folder.',
'</div>',
'<h4>',
'Roles that can add items to this folder',
'</h4>',
'<div id="add_perm" class="add_perm roles-selection"/>',
'<div class="alert alert-info roles-selection">',
'User with <strong>any</strong> of these roles can add items to this folder (folders and datasets).',
'</div>',
'<h4>',
'Roles that can modify this folder',
'</h4>',
'<div id="modify_perm" class="modify_perm roles-selection"/>',
'<div class="alert alert-info roles-selection">',
'User with <strong>any</strong> of these roles can modify this folder (name, etc.).',
'</div>',
'<button data-toggle="tooltip" data-placement="top" title="Save modifications" class="btn btn-default toolbtn_save_permissions primary-button" type="button">',
'<span class="fa fa-floppy-o"/>',
'&nbsp;Save',
'</button>',
'</div>',
'</div>'
].join(''));
}
});
client/galaxy/scripts/mvc/library/library-folderlist-view.js
+45 -43
View File
@@ -254,7 +254,6 @@ var FolderListView = Backbone.View.extend({
* Currently supports only sorting by name.
*/
sortFolder: function(sort_by, order){
console.log('sorting');
// default to asc sort by name
if (sort_by === 'undefined' && order === 'undefined'){
return this.collection.sortByNameAsc();
@@ -345,49 +344,52 @@ var FolderListView = Backbone.View.extend({
},
templateFolder : function (){
var tmpl_array = [];
return _.template([
// BREADCRUMBS
'<ol class="breadcrumb">',
'<li><a title="Return to the list of libraries" href="#">Libraries</a></li>',
'<% _.each(path, function(path_item) { %>',
'<% if (path_item[0] != id) { %>',
'<li><a title="Return to this folder" href="#/folders/<%- path_item[0] %>"><%- path_item[1] %></a> </li> ',
'<% } else { %>',
'<li class="active"><span title="You are in this folder"><%- path_item[1] %></span></li>',
'<% } %>',
'<% }); %>',
'</ol>',
// BREADCRUMBS
tmpl_array.push('<ol class="breadcrumb">');
tmpl_array.push(' <li><a title="Return to the list of libraries" href="#">Libraries</a></li>');
tmpl_array.push(' <% _.each(path, function(path_item) { %>');
tmpl_array.push(' <% if (path_item[0] != id) { %>');
tmpl_array.push(' <li><a title="Return to this folder" href="#/folders/<%- path_item[0] %>"><%- path_item[1] %></a> </li> ');
tmpl_array.push( '<% } else { %>');
tmpl_array.push(' <li class="active"><span title="You are in this folder"><%- path_item[1] %></span></li>');
tmpl_array.push(' <% } %>');
tmpl_array.push(' <% }); %>');
tmpl_array.push('</ol>');
// FOLDER CONTENT
tmpl_array.push('<table data-library-id="<%- parent_library_id %>" id="folder_table" class="grid table table-condensed">');
tmpl_array.push(' <thead>');
tmpl_array.push(' <th class="button_heading"></th>');
tmpl_array.push(' <th style="text-align: center; width: 20px; " title="Check to select all datasets"><input id="select-all-checkboxes" style="margin: 0;" type="checkbox"></th>');
tmpl_array.push(' <th><a class="sort-folder-link" title="Click to reverse order" href="#">name</a> <span title="Sorted alphabetically" class="sort-icon fa fa-sort-alpha-<%- order %>"></span></th>');
tmpl_array.push(' <th style="width:25%;">description</th>');
tmpl_array.push(' <th style="width:5%;">data type</th>');
tmpl_array.push(' <th style="width:10%;">size</th>');
tmpl_array.push(' <th style="width:160px;">time updated (UTC)</th>');
tmpl_array.push(' <th style="width:10%;"></th> ');
tmpl_array.push(' </thead>');
tmpl_array.push(' <tbody id="folder_list_body">');
tmpl_array.push(' <tr id="first_folder_item">');
tmpl_array.push(' <td><a href="#<% if (upper_folder_id !== 0){ print("folders/" + upper_folder_id)} %>" title="Go to parent folder" class="btn_open_folder btn btn-default btn-xs">..<a></td>');
tmpl_array.push(' <td></td>');
tmpl_array.push(' <td></td>');
tmpl_array.push(' <td></td>');
tmpl_array.push(' <td></td>');
tmpl_array.push(' <td></td>');
tmpl_array.push(' <td></td>');
tmpl_array.push(' <td></td>');
tmpl_array.push(' </tr>');
tmpl_array.push(' </tbody>');
tmpl_array.push('</table>');
tmpl_array.push('<div class="empty-folder-message" style="display:none;">This folder is either empty or you do not have proper access permissions to see the contents. If you expected something to show up please consult the <a href="https://wiki.galaxyproject.org/Admin/DataLibraries/LibrarySecurity" target="_blank">library security wikipage</a> or visit the <a href="https://biostar.usegalaxy.org/" target="_blank">Galaxy support site</a>.</div>');
return _.template(tmpl_array.join(''));
// FOLDER CONTENT
'<table data-library-id="<%- parent_library_id %>" id="folder_table" class="grid table table-condensed">',
'<thead>',
'<th class="button_heading"></th>',
'<th style="text-align: center; width: 20px; " title="Check to select all datasets"><input id="select-all-checkboxes" style="margin: 0;" type="checkbox"></th>',
'<th><a class="sort-folder-link" title="Click to reverse order" href="#">name</a> <span title="Sorted alphabetically" class="sort-icon fa fa-sort-alpha-<%- order %>"></span></th>',
'<th style="width:25%;">description</th>',
'<th style="width:5%;">data type</th>',
'<th style="width:10%;">size</th>',
'<th style="width:160px;">time updated (UTC)</th>',
'<th style="width:10%;"></th> ',
'</thead>',
'<tbody id="folder_list_body">',
'<tr id="first_folder_item">',
'<td>',
'<a href="#<% if (upper_folder_id !== 0){ print("folders/" + upper_folder_id)} %>" title="Go to parent folder" class="btn_open_folder btn btn-default btn-xs">..<a>',
'</td>',
'<td></td>',
'<td></td>',
'<td></td>',
'<td></td>',
'<td></td>',
'<td></td>',
'<td></td>',
'</tr>',
'</tbody>',
'</table>',
'<div class="empty-folder-message" style="display:none;">',
'This folder is either empty or you do not have proper access permissions to see the contents. If you expected something to show up',
' please consult the <a href="https://wiki.galaxyproject.org/Admin/DataLibraries/LibrarySecurity" target="_blank">library security wikipage</a>',
' or visit the <a href="https://biostar.usegalaxy.org/" target="_blank">Galaxy support site</a>.',
'</div>'
].join(''));
}
});
client/galaxy/scripts/mvc/library/library-folderrow-view.js
+108 -62
View File
@@ -53,8 +53,8 @@ var FolderRowView = Backbone.View.extend({
template = this.templateRowFile();
}
} else {
console.error('Unknown library item type found.');
console.error(folder_item.get('type') || folder_item.get('model_class'));
Galaxy.emit.error('Unknown library item type found.');
Galaxy.emit.error(folder_item.get('type') || folder_item.get('model_class'));
}
this.setElement(template({content_item: folder_item, edit_mode: this.options.edit_mode, button_config: this.options.visibility_config}));
this.$el.show();
@@ -224,7 +224,7 @@ var FolderRowView = Backbone.View.extend({
return _.template([
'<tr class="folder_row light library-row" data-id="<%- content_item.id %>">',
'<td>',
'<span title="Folder" class="fa fa-folder-o"></span>',
'<span title="Folder" class="fa fa-folder-o"/>',
'</td>',
'<td style="text-align: center; "><input style="margin: 0;" type="checkbox"></td>',
'<% if(!edit_mode) { %>',
@@ -245,15 +245,21 @@ var FolderRowView = Backbone.View.extend({
'</td>',
'<td>',
'<% if(edit_mode) { %>', // start edit mode
'<button data-toggle="tooltip" data-placement="top" title="Save changes" class="primary-button btn-xs save_folder_btn" type="button" style="<% if(button_config.save_folder_btn === false) { print("display:none;") } %>"><span class="fa fa-floppy-o"> Save</span></button>',
'<button data-toggle="tooltip" data-placement="top" title="Discard changes" class="primary-button btn-xs cancel_folder_btn" type="button" style="<% if(button_config.cancel_folder_btn === false) { print("display:none;") } %>"><span class="fa fa-times"> Cancel</span></button>',
'<button data-toggle="tooltip" data-placement="top" title="Save changes" class="primary-button btn-xs save_folder_btn" type="button" style="<% if(button_config.save_folder_btn === false) { print("display:none;") } %>">',
'<span class="fa fa-floppy-o"/>',
'&nbsp;Save',
'</button>',
'<button data-toggle="tooltip" data-placement="top" title="Discard changes" class="primary-button btn-xs cancel_folder_btn" type="button" style="<% if(button_config.cancel_folder_btn === false) { print("display:none;") } %>">',
'<span class="fa fa-times"/>',
'&nbsp;Cancel',
'</button>',
'<% } else if (!edit_mode){%>', // start no edit mode
'<button data-toggle="tooltip" data-placement="top" title="Modify \'<%- content_item.get("name") %>\'" class="primary-button btn-xs edit_folder_btn" type="button" style="<% if(button_config.edit_folder_btn === false) { print("display:none;") } %>">',
'<span class="fa fa-pencil"></span>',
'<span class="fa fa-pencil"/>',
'</button>',
'<a href="#/folders/<%- content_item.id %>/permissions">',
'<button data-toggle="tooltip" data-placement="top" class="primary-button btn-xs permission_folder_btn" title="Manage \'<%- content_item.get("name") %>\'" style="<% if(button_config.permission_folder_btn === false) { print("display:none;") } %>">',
'<span class="fa fa-group"></span>',
'<span class="fa fa-group"/>',
'</button>',
'</a>',
'<% } %>', //end no edit mode
@@ -263,67 +269,107 @@ var FolderRowView = Backbone.View.extend({
},
templateRowFile: function(){
tmpl_array = [];
tmpl_array.push('<tr class="dataset_row light library-row" data-id="<%- content_item.id %>">');
tmpl_array.push(' <td>');
tmpl_array.push(' <span title="Dataset" class="fa fa-file-o"></span>');
tmpl_array.push(' </td>');
tmpl_array.push(' <td style="text-align: center; "><input style="margin: 0;" type="checkbox"></td>');
tmpl_array.push(' <td><a href="#folders/<%- content_item.get("folder_id") %>/datasets/<%- content_item.id %>" class="library-dataset"><%- content_item.get("name") %><a></td>'); // dataset
tmpl_array.push(' <td><%- content_item.get("message") %></td>');
tmpl_array.push(' <td><%= _.escape(content_item.get("file_ext")) %></td>'); // data type
tmpl_array.push(' <td><%= _.escape(content_item.get("file_size")) %></td>'); // size
tmpl_array.push(' <td><%= _.escape(content_item.get("update_time")) %></td>'); // time updated
tmpl_array.push(' <td>');
tmpl_array.push(' <% if (content_item.get("is_unrestricted")) { %><span data-toggle="tooltip" data-placement="top" title="Unrestricted dataset" style="color:grey;" class="fa fa-globe fa-lg"></span><% } %>');
tmpl_array.push(' <% if (content_item.get("is_private")) { %><span data-toggle="tooltip" data-placement="top" title="Private dataset" style="color:grey;" class="fa fa-key fa-lg"></span><% } %>');
tmpl_array.push(' <% if ((content_item.get("is_unrestricted") === false) && (content_item.get("is_private") === false)) { %><span data-toggle="tooltip" data-placement="top" title="Restricted dataset" style="color:grey;" class="fa fa-shield fa-lg"></span><% } %>');
tmpl_array.push(' <% if (content_item.get("can_manage")) { %><a href="#folders/<%- content_item.get("folder_id") %>/datasets/<%- content_item.id %>/permissions"><button data-toggle="tooltip" data-placement="top" class="primary-button btn-xs permissions-dataset-btn" title="Manage permissions"><span class="fa fa-group"></span></button></a><% } %>');
tmpl_array.push(' </td>');
tmpl_array.push('</tr>');
return _.template(tmpl_array.join(''));
return _.template([
'<tr class="dataset_row light library-row" data-id="<%- content_item.id %>">',
'<td>',
'<span title="Dataset" class="fa fa-file-o"/>',
'</td>',
'<td style="text-align: center; ">',
'<input style="margin: 0;" type="checkbox">',
'</td>',
'<td>',
'<a href="#folders/<%- content_item.get("folder_id") %>/datasets/<%- content_item.id %>" class="library-dataset">',
'<%- content_item.get("name") %>',
'<a>',
'</td>',
'<td><%- content_item.get("message") %></td>',
'<td><%= _.escape(content_item.get("file_ext")) %></td>',
'<td><%= _.escape(content_item.get("file_size")) %></td>',
'<td><%= _.escape(content_item.get("update_time")) %></td>',
'<td>',
'<% if (content_item.get("is_unrestricted")) { %>',
'<span data-toggle="tooltip" data-placement="top" title="Unrestricted dataset" style="color:grey;" class="fa fa-globe fa-lg"/>',
'<% } %>',
'<% if (content_item.get("is_private")) { %>',
'<span data-toggle="tooltip" data-placement="top" title="Private dataset" style="color:grey;" class="fa fa-key fa-lg"/>',
'<% } %>',
'<% if ((content_item.get("is_unrestricted") === false) && (content_item.get("is_private") === false)) { %>',
'<span data-toggle="tooltip" data-placement="top" title="Restricted dataset" style="color:grey;" class="fa fa-shield fa-lg"/>',
'<% } %>',
'<% if (content_item.get("can_manage")) { %>',
'<a href="#folders/<%- content_item.get("folder_id") %>/datasets/<%- content_item.id %>/permissions">',
'<button data-toggle="tooltip" data-placement="top" class="primary-button btn-xs permissions-dataset-btn" title="Manage permissions">',
'<span class="fa fa-group"/>',
'</button>',
'</a>',
'<% } %>',
'</td>',
'</tr>'
].join(''));
},
templateRowDeletedFile: function(){
tmpl_array = [];
tmpl_array.push('<tr class="active deleted_dataset library-row" data-id="<%- content_item.id %>">');
tmpl_array.push(' <td>');
tmpl_array.push(' <span title="Dataset" class="fa fa-file-o"></span>');
tmpl_array.push(' </td>');
tmpl_array.push(' <td></td>');
tmpl_array.push(' <td style="color:grey;"><%- content_item.get("name") %></td>'); // dataset
tmpl_array.push(' <td><%- content_item.get("message") %></td>');
tmpl_array.push(' <td><%= _.escape(content_item.get("file_ext")) %></td>'); // data type
tmpl_array.push(' <td><%= _.escape(content_item.get("file_size")) %></td>'); // size
tmpl_array.push(' <td><%= _.escape(content_item.get("update_time")) %></td>'); // time updated
tmpl_array.push(' <td><span data-toggle="tooltip" data-placement="top" title="Marked deleted" style="color:grey;" class="fa fa-ban fa-lg"> </span><button data-toggle="tooltip" data-placement="top" title="Undelete <%- content_item.get("name") %>" class="primary-button btn-xs undelete_dataset_btn" type="button" style="margin-left:1em;"><span class="fa fa-unlock"> Undelete</span></button></td>');
tmpl_array.push('</tr>');
return _.template(tmpl_array.join(''));
return _.template([
'<tr class="active deleted_dataset library-row" data-id="<%- content_item.id %>">',
'<td>',
'<span title="Dataset" class="fa fa-file-o"/>',
'</td>',
'<td></td>',
'<td style="color:grey;">',
'<%- content_item.get("name") %>',
'</td>',
'<td>',
'<%- content_item.get("message") %>',
'</td>',
'<td>',
'<%= _.escape(content_item.get("file_ext")) %>',
'</td>',
'<td>',
'<%= _.escape(content_item.get("file_size")) %>',
'</td>',
'<td>',
'<%= _.escape(content_item.get("update_time")) %>',
'</td>',
'<td>',
'<span data-toggle="tooltip" data-placement="top" title="Marked deleted" style="color:grey;" class="fa fa-ban fa-lg"/>',
'<button data-toggle="tooltip" data-placement="top" title="Undelete <%- content_item.get("name") %>" class="primary-button btn-xs undelete_dataset_btn" type="button" style="margin-left:1em;">',
'<span class="fa fa-unlock"/>',
'&nbsp;Undelete',
'</button>',
'</td>',
'</tr>'
].join(''));
},
templateRowDeletedFolder: function(){
tmpl_array = [];
tmpl_array.push('<tr class="active deleted_folder light library-row" data-id="<%- content_item.id %>">');
tmpl_array.push(' <td>');
tmpl_array.push(' <span title="Folder" class="fa fa-folder-o"></span>');
tmpl_array.push(' </td>');
tmpl_array.push(' <td></td>');
tmpl_array.push(' <td style="color:grey;">');
tmpl_array.push(' <%- content_item.get("name") %>');
tmpl_array.push(' </td>');
tmpl_array.push(' <td><%- content_item.get("description") %></td>');
tmpl_array.push(' <td>folder</td>');
tmpl_array.push(' <td></td>');
tmpl_array.push(' <td><%= _.escape(content_item.get("update_time")) %></td>'); // time updated
tmpl_array.push(' <td><span data-toggle="tooltip" data-placement="top" title="Marked deleted" style="color:grey;" class="fa fa-ban fa-lg"> </span><button data-toggle="tooltip" data-placement="top" title="Undelete <%- content_item.get("name") %>" class="primary-button btn-xs undelete_folder_btn" type="button" style="margin-left:1em;"><span class="fa fa-unlock"> Undelete</span></button></td>');
tmpl_array.push('</tr>');
return _.template(tmpl_array.join(''));
return _.template([
'<tr class="active deleted_folder light library-row" data-id="<%- content_item.id %>">',
'<td>',
'<span title="Folder" class="fa fa-folder-o"/>',
'</td>',
'<td></td>',
'<td style="color:grey;">',
'<%- content_item.get("name") %>',
'</td>',
'<td>',
'<%- content_item.get("description") %>',
'</td>',
'<td>',
'folder',
'</td>',
'<td></td>',
'<td>',
'<%= _.escape(content_item.get("update_time")) %>',
'</td>',
'<td>',
'<span data-toggle="tooltip" data-placement="top" title="Marked deleted" style="color:grey;" class="fa fa-ban fa-lg"/>',
'<button data-toggle="tooltip" data-placement="top" title="Undelete <%- content_item.get("name") %>" class="primary-button btn-xs undelete_folder_btn" type="button" style="margin-left:1em;">',
'<span class="fa fa-unlock"/>',
'&nbsp;Undelete',
'</button>',
'</td>',
'</tr>'
].join(''));
}
});
client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
+14 -15
View File
@@ -639,7 +639,7 @@ var FolderToolbarView = Backbone.View.extend({
this.modal.$el.find( '.modal-body' ).html( template( { folder_name : this.options.folder_name } ) );
break;
case "deleting_datasets":
template = this.templateDeletingDatasetsProgressBar();
template = this.templateDeletingItemsProgressBar();
this.modal.$el.find( '.modal-body' ).html( template() );
break;
case "to_history":
@@ -959,13 +959,13 @@ var FolderToolbarView = Backbone.View.extend({
deleteSelectedItems: function(){
var checkedValues = $('#folder_table').find(':checked');
if(checkedValues.length === 0){
mod_toastr.info('You must select at least one dataset for deletion.');
mod_toastr.info('You must select at least one item for deletion.');
} else {
var template = this.templateDeletingDatasetsProgressBar();
var template = this.templateDeletingItemsProgressBar();
this.modal = Galaxy.modal;
this.modal.show({
closing_events : true,
title : 'Deleting selected datasets',
title : 'Deleting selected items',
body : template({}),
buttons : {
'Close' : function() {Galaxy.modal.hide();}
@@ -1038,7 +1038,7 @@ var FolderToolbarView = Backbone.View.extend({
this.modal = Galaxy.modal;
this.modal.show({
closing_events : true,
title : 'Location Information',
title : 'Location Details',
body : template({library: library, options: that.options}),
buttons : {
'Close' : function() {Galaxy.modal.hide();}
@@ -1090,10 +1090,10 @@ var FolderToolbarView = Backbone.View.extend({
'<span class="library-paginator folder-paginator"></span>',
'<div class="checkbox toolbar-item logged-dataset-manipulation" style="height: 20px; display:none;">',
'<label>',
'<input id="include_deleted_datasets_chk" type="checkbox"> include deleted </input>',
'<input id="include_deleted_datasets_chk" type="checkbox">include deleted</input>',
'</label>',
'</div>',
'<button style="display:none;" data-toggle="tooltip" data-placement="top" title="Create New Folder" id="toolbtn_create_folder" class="btn btn-default primary-button add-library-items" type="button">',
'<button style="display:none;" data-toggle="tooltip" data-placement="top" title="Create New Folder" id="toolbtn_create_folder" class="btn btn-default primary-button add-library-items toolbar-item" type="button">',
'<span class="fa fa-plus"></span><span class="fa fa-folder"></span>',
'</button>',
'<% if(mutiple_add_dataset_options) { %>',
@@ -1127,8 +1127,8 @@ var FolderToolbarView = Backbone.View.extend({
'<span class="fa fa-book"></span>',
'&nbsp;to History',
'</button>',
'<div id="toolbtn_dl" class="btn-group dataset-manipulation" style="margin-left: 0.5em; display:none; ">',
'<button title="Download selected datasets as archive" id="drop_toggle" type="button" class="primary-button dropdown-toggle" data-toggle="dropdown">',
'<div class="btn-group dataset-manipulation" style="margin-left: 0.5em; display:none; ">',
'<button title="Download selected items as archive" type="button" class="primary-button dropdown-toggle" data-toggle="dropdown">',
'<span class="fa fa-download"></span> Download <span class="caret"></span>',
'</button>',
'<ul class="dropdown-menu" role="menu">',
@@ -1139,9 +1139,9 @@ var FolderToolbarView = Backbone.View.extend({
'</div>',
'<button data-toggle="tooltip" data-placement="top" title="Mark selected items deleted" id="toolbtn_bulk_delete" class="primary-button logged-dataset-manipulation" style="margin-left: 0.5em; display:none; " type="button">',
'<span class="fa fa-times"></span> Delete</button>',
'<button data-id="<%- id %>" data-toggle="tooltip" data-placement="top" title="Show location information" class="primary-button toolbtn-show-locinfo" style="margin-left: 0.5em;" type="button">',
'<button data-id="<%- id %>" data-toggle="tooltip" data-placement="top" title="Show location details" class="primary-button toolbtn-show-locinfo" style="margin-left: 0.5em;" type="button">',
'<span class="fa fa-info-circle"></span>',
'&nbsp;Location Info',
'&nbsp;Details',
'</button>',
'<span class="help-button" data-toggle="tooltip" data-placement="top" title="Visit Libraries Wiki">',
'<a href="https://wiki.galaxyproject.org/DataLibraries/screen/FolderContents" target="_blank">',
@@ -1160,7 +1160,6 @@ var FolderToolbarView = Backbone.View.extend({
'</div>',
// paginator will append here
'<div class="folder-paginator paginator-bottom"></div>'
].join(''));
},
@@ -1262,7 +1261,7 @@ var FolderToolbarView = Backbone.View.extend({
templateImportIntoHistoryProgressBar : function (){
return _.template([
'<div class="import_text">',
'Importing selected datasets to history <b><%= _.escape(history_name) %></b>',
'Importing selected items to history <b><%= _.escape(history_name) %></b>',
'</div>',
'<div class="progress">',
'<div class="progress-bar progress-bar-import" role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100" style="width: 00%;">',
@@ -1285,7 +1284,7 @@ var FolderToolbarView = Backbone.View.extend({
].join(''));
},
templateDeletingDatasetsProgressBar: function (){
templateDeletingItemsProgressBar: function (){
return _.template([
'<div class="import_text">',
'</div>',
@@ -1423,7 +1422,7 @@ var FolderToolbarView = Backbone.View.extend({
'<% } %>',
'</ul>',
'<span>',
'showing&nbsp;',
'&nbsp;showing&nbsp;',
'<a data-toggle="tooltip" data-placement="top" title="Click to change the number of items on page" class="page_size_prompt">',
'<%- items_shown %>',
'</a>',
client/galaxy/scripts/mvc/library/library-library-view.js
+96 -86
View File
@@ -242,95 +242,105 @@ var LibraryView = Backbone.View.extend({
},
templateLibrary : function(){
var tmpl_array = [];
// CONTAINER START
tmpl_array.push('<div class="library_style_container">');
tmpl_array.push(' <div id="library_toolbar">');
tmpl_array.push(' <button data-toggle="tooltip" data-placement="top" title="Modify library item" class="btn btn-default toolbtn_modify_dataset primary-button" type="button"><span class="fa fa-pencil"></span> Modify</span></button>');
tmpl_array.push(' <a href="#folders/<%- item.get("folder_id") %>/datasets/<%- item.id %>/permissions"><button data-toggle="tooltip" data-placement="top" title="Manage permissions" class="btn btn-default toolbtn_change_permissions primary-button" type="button"><span class="fa fa-group"></span> Permissions</span></button></a>');
tmpl_array.push(' <button data-toggle="tooltip" data-placement="top" title="Share dataset" class="btn btn-default toolbtn-share-dataset primary-button" type="button"><span class="fa fa-share"></span> Share</span></button>');
tmpl_array.push(' </div>');
// tmpl_array.push('<% if (item.get("is_unrestricted")) { %>');
tmpl_array.push(' <p>');
tmpl_array.push(' This dataset is unrestricted so everybody can access it. Just share the URL of this page. ');
tmpl_array.push(' <button data-toggle="tooltip" data-placement="top" title="Copy to clipboard" class="btn btn-default btn-copy-link-to-clipboard primary-button" type="button"><span class="fa fa-clipboard"></span> To Clipboard</span></button> ');
tmpl_array.push(' </p>');
// tmpl_array.push('<% } %>');
tmpl_array.push('<div class="dataset_table">');
tmpl_array.push(' <table class="grid table table-striped table-condensed">');
tmpl_array.push(' <tr>');
tmpl_array.push(' <th scope="row" id="id_row" data-id="<%= _.escape(item.get("ldda_id")) %>">Name</th>');
tmpl_array.push(' <td><%= _.escape(item.get("name")) %></td>');
tmpl_array.push(' </tr>');
tmpl_array.push(' <% if (item.get("file_ext")) { %>');
tmpl_array.push(' <tr>');
tmpl_array.push(' <th scope="row">Data type</th>');
tmpl_array.push(' <td><%= _.escape(item.get("file_ext")) %></td>');
tmpl_array.push(' </tr>');
tmpl_array.push(' <% } %>');
tmpl_array.push(' </table>');
tmpl_array.push('</div>');
// CONTAINER END
tmpl_array.push('</div>');
return _.template(tmpl_array.join(''));
return _.template([
'<div class="library_style_container">',
'<div id="library_toolbar">',
'<button data-toggle="tooltip" data-placement="top" title="Modify library item" class="btn btn-default toolbtn_modify_dataset primary-button" type="button">',
'<span class="fa fa-pencil"/>',
'&nbsp;Modify',
'</button>',
'<a href="#folders/<%- item.get("folder_id") %>/datasets/<%- item.id %>/permissions">',
'<button data-toggle="tooltip" data-placement="top" title="Manage permissions" class="btn btn-default toolbtn_change_permissions primary-button" type="button">',
'<span class="fa fa-group"/>',
'&nbsp;Permissions',
'</button>',
'</a>',
'<button data-toggle="tooltip" data-placement="top" title="Share dataset" class="btn btn-default toolbtn-share-dataset primary-button" type="button">',
'<span class="fa fa-share"/>',
'&nbsp;Share',
'</button>',
'</div>',
'<p>',
'This dataset is unrestricted so everybody can access it. Just share the URL of this page. ',
'<button data-toggle="tooltip" data-placement="top" title="Copy to clipboard" class="btn btn-default btn-copy-link-to-clipboard primary-button" type="button">',
'<span class="fa fa-clipboard"/>',
'&nbsp;To Clipboard',
'</button> ',
'</p>',
'<div class="dataset_table">',
'<table class="grid table table-striped table-condensed">',
'<tr>',
'<th scope="row" id="id_row" data-id="<%= _.escape(item.get("ldda_id")) %>">',
'Name',
'</th>',
'<td>',
'<%= _.escape(item.get("name")) %>',
'</td>',
'</tr>',
'<% if (item.get("file_ext")) { %>',
'<tr>',
'<th scope="row">Data type</th>',
'<td>',
'<%= _.escape(item.get("file_ext")) %>',
'</td>',
'</tr>',
'<% } %>',
'</table>',
'</div>',
'</div>',
].join(''));
},
templateLibraryPermissions : function(){
var tmpl_array = [];
// CONTAINER START
tmpl_array.push('<div class="library_style_container">');
tmpl_array.push(' <div id="library_toolbar">');
tmpl_array.push(' <a href="#"><button data-toggle="tooltip" data-placement="top" title="Go back to the list of Libraries" class="btn btn-default primary-button" type="button"><span class="fa fa-list"></span> Libraries</span></button></a>');
tmpl_array.push(' </div>');
tmpl_array.push('<h1>Library: <%= _.escape(library.get("name")) %></h1>');
tmpl_array.push('<div class="alert alert-warning">');
tmpl_array.push('<% if (is_admin) { %>');
tmpl_array.push('You are logged in as an <strong>administrator</strong> therefore you can manage any library on this Galaxy instance. Please make sure you understand the consequences.');
tmpl_array.push('<% } else { %>');
tmpl_array.push('You can assign any number of roles to any of the following permission types. However please read carefully the implications of such actions.');
tmpl_array.push('<% }%>');
tmpl_array.push('</div>');
tmpl_array.push('<div class="dataset_table">');
tmpl_array.push('<h2>Library permissions</h2>');
tmpl_array.push('<h4>Roles that can access the library</h4>');
tmpl_array.push('<div id="access_perm" class="access_perm roles-selection"></div>');
tmpl_array.push('<div class="alert alert-info roles-selection">User with <strong>any</strong> of these roles can access this library. If there are no access roles set on the library it is considered <strong>unrestricted</strong>.</div>');
tmpl_array.push('<h4>Roles that can manage permissions on this library</h4>');
tmpl_array.push('<div id="manage_perm" class="manage_perm roles-selection"></div>');
tmpl_array.push('<div class="alert alert-info roles-selection">User with <strong>any</strong> of these roles can manage permissions on this library (includes giving access).</div>');
tmpl_array.push('<h4>Roles that can add items to this library</h4>');
tmpl_array.push('<div id="add_perm" class="add_perm roles-selection"></div>');
tmpl_array.push('<div class="alert alert-info roles-selection">User with <strong>any</strong> of these roles can add items to this library (folders and datasets).</div>');
tmpl_array.push('<h4>Roles that can modify this library</h4>');
tmpl_array.push('<div id="modify_perm" class="modify_perm roles-selection"></div>');
tmpl_array.push('<div class="alert alert-info roles-selection">User with <strong>any</strong> of these roles can modify this library (name, synopsis, etc.).</div>');
tmpl_array.push('<button data-toggle="tooltip" data-placement="top" title="Save modifications made on this page" class="btn btn-default toolbtn_save_permissions primary-button" type="button"><span class="fa fa-floppy-o"></span> Save</span></button>');
tmpl_array.push('</div>');
// CONTAINER END
tmpl_array.push('</div>');
return _.template(tmpl_array.join(''));
return _.template([
'<div class="library_style_container">',
'<div id="library_toolbar">',
'<a href="#">',
'<button data-toggle="tooltip" data-placement="top" title="Go back to the list of Libraries" class="btn btn-default primary-button" type="button">',
'<span class="fa fa-list"/>',
'&nbsp;Libraries',
'</button>',
'</a>',
'</div>',
'<h1>',
'Library: <%= _.escape(library.get("name")) %>',
'</h1>',
'<div class="alert alert-warning">',
'<% if (is_admin) { %>',
'You are logged in as an <strong>administrator</strong> therefore you can manage any library on this Galaxy instance. Please make sure you understand the consequences.',
'<% } else { %>',
'You can assign any number of roles to any of the following permission types. However please read carefully the implications of such actions.',
'<% }%>',
'</div>',
'<div class="dataset_table">',
'<h2>Library permissions</h2>',
'<h4>Roles that can access the library</h4>',
'<div id="access_perm" class="access_perm roles-selection"/>',
'<div class="alert alert-info roles-selection">',
'User with <strong>any</strong> of these roles can access this library. If there are no access roles set on the library it is considered <strong>unrestricted</strong>.',
'</div>',
'<h4>Roles that can manage permissions on this library</h4>',
'<div id="manage_perm" class="manage_perm roles-selection"/>',
'<div class="alert alert-info roles-selection">',
'User with <strong>any</strong> of these roles can manage permissions on this library (includes giving access).',
'</div>',
'<h4>Roles that can add items to this library</h4>',
'<div id="add_perm" class="add_perm roles-selection"/>',
'<div class="alert alert-info roles-selection">',
'User with <strong>any</strong> of these roles can add items to this library (folders and datasets).',
'</div>',
'<h4>Roles that can modify this library</h4>',
'<div id="modify_perm" class="modify_perm roles-selection"/>',
'<div class="alert alert-info roles-selection">',
'User with <strong>any</strong> of these roles can modify this library (name, synopsis, etc.).',
'</div>',
'<button data-toggle="tooltip" data-placement="top" title="Save modifications made on this page" class="btn btn-default toolbtn_save_permissions primary-button" type="button">',
'<span class="fa fa-floppy-o"/>',
'&nbsp;Save',
'</button>',
'</div>',
'</div>',
].join(''));
}
});
client/galaxy/scripts/mvc/library/library-librarylist-view.js
+61 -27
View File
@@ -25,7 +25,8 @@ var LibraryListView = Backbone.View.extend({
defaults: {
page_count: null,
show_page: null
show_page: null,
all_fetched: false
},
/**
@@ -39,6 +40,7 @@ var LibraryListView = Backbone.View.extend({
this.modal = null;
// collection of {Item}s
this.collection = new mod_library_model.Libraries();
this.collection.url = this.collection.urlRoot + '?deleted=false';
this.collection.fetch({
success: function(){
that.render();
@@ -119,6 +121,29 @@ var LibraryListView = Backbone.View.extend({
$( "#center" ).css( 'overflow','auto' );
},
fetchDeleted: function(){
if (this.options.all_fetched){
this.render();
} else{
var that = this;
this.collection.url = this.collection.urlRoot + '?deleted=true';
this.collection.fetch({
remove: false,
success: function(){
that.options.all_fetched = true;
that.render();
},
error: function( model, response ){
if ( typeof response.responseJSON !== "undefined" ){
mod_toastr.error( response.responseJSON.err_msg );
} else {
mod_toastr.error( 'An error ocurred.' );
}
}
});
}
},
/**
* Render all given models as rows in the library list
* @param {array} libraries_to_render array of library models to render
@@ -197,32 +222,41 @@ var LibraryListView = Backbone.View.extend({
// MMMMMMMMMMMMMMMMMM
templateLibraryList: function(){
tmpl_array = [];
tmpl_array.push('<div class="library_container table-responsive">');
tmpl_array.push('<% if(length === 0) { %>');
tmpl_array.push('<% if(search_term.length > 0) { %>');
tmpl_array.push('<div>There are no libraries matching your search. Try different keyword.</div>');
tmpl_array.push('<% } else{ %>');
tmpl_array.push('<div>There are no libraries visible to you here. If you expected some to show up please consult the <a href="https://wiki.galaxyproject.org/Admin/DataLibraries/LibrarySecurity" target="_blank">library security wikipage</a> or visit the <a href="https://biostar.usegalaxy.org/" target="_blank">Galaxy support site</a>.</div>');
tmpl_array.push('<% }%>');
tmpl_array.push('<% } else{ %>');
tmpl_array.push('<table class="grid table table-condensed">');
tmpl_array.push(' <thead>');
tmpl_array.push(' <th style="width:30%;"><a class="sort-libraries-link" title="Click to reverse order" href="#">name</a> <span title="Sorted alphabetically" class="fa fa-sort-alpha-<%- order %>"></span></th>');
tmpl_array.push(' <th style="width:22%;">description</th>');
tmpl_array.push(' <th style="width:22%;">synopsis</th> ');
tmpl_array.push(' <th style="width:26%;"></th>');
tmpl_array.push(' </thead>');
tmpl_array.push(' <tbody id="library_list_body">');
// library item views will attach here
tmpl_array.push(' </tbody>');
tmpl_array.push('</table>');
tmpl_array.push('<% }%>');
tmpl_array.push('</div>');
return _.template(tmpl_array.join(''));
},
return _.template([
'<div class="library_container table-responsive">',
'<% if(length === 0) { %>',
'<% if(search_term.length > 0) { %>',
'<div>',
'There are no libraries matching your search. Try different keyword.',
'</div>',
'<% } else{ %>',
'<div>',
'There are no libraries visible to you here. If you expected some to show up please consult the',
' <a href="https://wiki.galaxyproject.org/Admin/DataLibraries/LibrarySecurity" target="_blank">library security wikipage</a>',
' or visit the <a href="https://biostar.usegalaxy.org/" target="_blank">Galaxy support site</a>.',
'</div>',
'<% }%>',
'<% } else{ %>',
'<table class="grid table table-condensed">',
'<thead>',
'<th style="width:30%;">',
'<a class="sort-libraries-link" title="Click to reverse order" href="#">',
'name',
'</a>',
'<span title="Sorted alphabetically" class="fa fa-sort-alpha-<%- order %>"/>',
'</th>',
'<th style="width:22%;">description</th>',
'<th style="width:22%;">synopsis</th> ',
'<th style="width:26%;"></th>',
'</thead>',
'<tbody id="library_list_body">',
// library item views will attach here
'</tbody>',
'</table>',
'<% }%>',
'</div>'
].join(''));
}
});
client/galaxy/scripts/mvc/library/library-librarytoolbar-view.js
+4 -2
View File
@@ -148,7 +148,7 @@ var LibraryToolbarView = Backbone.View.extend({
includeDeletedChecked: function( event ){
if (event.target.checked){
Galaxy.libraries.preferences.set( { 'with_deleted': true } );
Galaxy.libraries.libraryListView.render();
Galaxy.libraries.libraryListView.fetchDeleted();
} else{
Galaxy.libraries.preferences.set( { 'with_deleted': false } );
Galaxy.libraries.libraryListView.render();
@@ -182,7 +182,9 @@ var LibraryToolbarView = Backbone.View.extend({
'<% if(admin_user === true) { %>',
'<div class="checkbox toolbar-item" style="height: 20px;">',
'<label>',
'<input id="include_deleted_chk" type="checkbox"> include deleted </input>',
'<input id="include_deleted_chk" type="checkbox">',
'&nbsp;include deleted ',
'</input>',
'</label>',
'</div>',
'<span class="toolbar-item" data-toggle="tooltip" data-placement="top" title="Create New Library">',
client/galaxy/scripts/mvc/library/library-model.js
+2 -2
View File
@@ -19,7 +19,7 @@ define([], function() {
});
var Libraries = Backbone.Collection.extend({
url: Galaxy.root + 'api/libraries',
urlRoot: Galaxy.root + 'api/libraries',
model: Library,
@@ -182,7 +182,7 @@ define([], function() {
var file_item = new Ldda(obj.folder_contents[i])
this.get("folder").add(file_item);
} else{
console.error('Unknown folder item type encountered while parsing response.');
Galaxy.emit.error('Unknown folder item type encountered while parsing response.');
}
};
return obj;
client/galaxy/style/less/library.less
+1
View File
@@ -6,6 +6,7 @@
}
.library_style_container .fa-globe{
font-size: initial;
margin-left: 0.6em;
}
.libraryRow {
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static/maps/mvc/library/library-model.js.map
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define(["layout/masthead","mvc/base-mvc","utils/utils","libs/toastr","mvc/library/library-model","mvc/library/library-libraryrow-view","libs/underscore"],function(a,b,c,d,e,f,g){var h=Backbone.View.extend({el:"#libraries_element",events:{"click .sort-libraries-link":"sort_clicked"},defaults:{page_count:null,show_page:null},initialize:function(a){this.options=g.defaults(this.options||{},a,this.defaults);var b=this;this.modal=null,this.collection=new e.Libraries,this.collection.fetch({success:function(){b.render()},error:function(a,b){d.error("undefined"!=typeof b.responseJSON?b.responseJSON.err_msg:"An error ocurred.")}})},render:function(a){this.options=g.extend(this.options,a),this.setElement("#libraries_element");var b=this.templateLibraryList(),c=null,d=null;if($(".tooltip").hide(),"undefined"!=typeof a&&(d="undefined"!=typeof a.models?a.models:null),null!==this.collection&&null===d)this.sortLibraries(),c=Galaxy.libraries.preferences.get("with_deleted")?this.collection.models:this.collection.where({deleted:!1});else if(null!==d)if(Galaxy.libraries.preferences.get("with_deleted"))c=d;else{var e=function(a){return a.get("deleted")===!1};c=g.filter(d,e)}else c=[];(null===this.options.show_page||this.options.show_page<1)&&(this.options.show_page=1),this.options.total_libraries_count=c.length;var f=Galaxy.libraries.preferences.get("library_page_size")*(this.options.show_page-1);this.options.page_count=Math.ceil(this.options.total_libraries_count/Galaxy.libraries.preferences.get("library_page_size")),this.options.total_libraries_count>0&&f<this.options.total_libraries_count?(c=c.slice(f,f+Galaxy.libraries.preferences.get("library_page_size")),this.options.libraries_shown=c.length,Galaxy.libraries.preferences.get("library_page_size")*this.options.show_page>this.options.total_libraries_count+Galaxy.libraries.preferences.get("library_page_size")&&(c=[]),this.$el.html(b({length:1,order:Galaxy.libraries.preferences.get("sort_order"),search_term:Galaxy.libraries.libraryToolbarView.options.search_term})),Galaxy.libraries.libraryToolbarView.renderPaginator(this.options),this.renderRows(c)):(this.$el.html(b({length:0,order:Galaxy.libraries.preferences.get("sort_order"),search_term:Galaxy.libraries.libraryToolbarView.options.search_term})),Galaxy.libraries.libraryToolbarView.renderPaginator(this.options)),$("#center [data-toggle]").tooltip(),$("#center").css("overflow","auto")},renderRows:function(a){for(var b=0;b<a.length;b++){var c=a[b];this.renderOne({library:c})}},renderOne:function(a){var b=a.library,c=new f.LibraryRowView(b);this.$el.find("#library_list_body").append(c.el)},sort_clicked:function(){Galaxy.libraries.preferences.set("asc"===Galaxy.libraries.preferences.get("sort_order")?{sort_order:"desc"}:{sort_order:"asc"}),this.render()},sortLibraries:function(){"name"===Galaxy.libraries.preferences.get("sort_by")&&("asc"===Galaxy.libraries.preferences.get("sort_order")?this.collection.sortByNameAsc():"desc"===Galaxy.libraries.preferences.get("sort_order")&&this.collection.sortByNameDesc())},redirectToHome:function(){window.location="../"},redirectToLogin:function(){window.location="/user/login"},searchLibraries:function(a){var b=$.trim(a);if(""!==b){var c=null;c=this.collection.search(a),this.options.searching=!0,this.render({models:c})}else this.options.searching=!1,this.render()},templateLibraryList:function(){return tmpl_array=[],tmpl_array.push('<div class="library_container table-responsive">'),tmpl_array.push("<% if(length === 0) { %>"),tmpl_array.push("<% if(search_term.length > 0) { %>"),tmpl_array.push("<div>There are no libraries matching your search. Try different keyword.</div>"),tmpl_array.push("<% } else{ %>"),tmpl_array.push('<div>There are no libraries visible to you here. If you expected some to show up please consult the <a href="https://wiki.galaxyproject.org/Admin/DataLibraries/LibrarySecurity" target="_blank">library security wikipage</a> or visit the <a href="https://biostar.usegalaxy.org/" target="_blank">Galaxy support site</a>.</div>'),tmpl_array.push("<% }%>"),tmpl_array.push("<% } else{ %>"),tmpl_array.push('<table class="grid table table-condensed">'),tmpl_array.push(" <thead>"),tmpl_array.push(' <th style="width:30%;"><a class="sort-libraries-link" title="Click to reverse order" href="#">name</a> <span title="Sorted alphabetically" class="fa fa-sort-alpha-<%- order %>"></span></th>'),tmpl_array.push(' <th style="width:22%;">description</th>'),tmpl_array.push(' <th style="width:22%;">synopsis</th> '),tmpl_array.push(' <th style="width:26%;"></th>'),tmpl_array.push(" </thead>"),tmpl_array.push(' <tbody id="library_list_body">'),tmpl_array.push(" </tbody>"),tmpl_array.push("</table>"),tmpl_array.push("<% }%>"),tmpl_array.push("</div>"),g.template(tmpl_array.join(""))}});return{LibraryListView:h}});
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define([],function(){var a=Backbone.Model.extend({urlRoot:Galaxy.root+"api/libraries/",isVisible:function(a){var b=!0;return!a&&this.get("deleted")&&(b=!1),b}}),b=Backbone.Collection.extend({url:Galaxy.root+"api/libraries",model:a,sort_key:"name",sort_order:null,initialize:function(a){a=a||{}},search:function(a){if(""==a)return this;var b=a.toLowerCase();return this.filter(function(a){return lowercase_name=a.get("name").toLowerCase(),-1!==lowercase_name.indexOf(b)})},getVisible:function(a,c){c=c||[];var d=new b(this.filter(function(b){return b.isVisible(a)}));return d},sortByNameAsc:function(){return this.comparator=function(a,b){return a.get("name").toLowerCase()>b.get("name").toLowerCase()?1:b.get("name").toLowerCase()>a.get("name").toLowerCase()?-1:0},this.sort(),this},sortByNameDesc:function(){return this.comparator=function(a,b){return a.get("name").toLowerCase()>b.get("name").toLowerCase()?-1:b.get("name").toLowerCase()>a.get("name").toLowerCase()?1:0},this.sort(),this}}),c=Backbone.Model.extend({}),d=c.extend({urlRoot:Galaxy.root+"api/libraries/datasets/"}),e=c.extend({urlRoot:Galaxy.root+"api/folders/"}),f=Backbone.Collection.extend({model:c,sortByNameAsc:function(){return this.comparator=function(a,b){return a.get("type")===b.get("type")?a.get("name").toLowerCase()>b.get("name").toLowerCase()?1:b.get("name").toLowerCase()>a.get("name").toLowerCase()?-1:0:"folder"===a.get("type")?-1:1},this.sort(),this},sortByNameDesc:function(){return this.comparator=function(a,b){return a.get("type")===b.get("type")?a.get("name").toLowerCase()>b.get("name").toLowerCase()?-1:b.get("name").toLowerCase()>a.get("name").toLowerCase()?1:0:"folder"===a.get("type")?-1:1},this.sort(),this}}),g=Backbone.Model.extend({defaults:{folder:new f,urlRoot:Galaxy.root+"api/folders/",id:"unknown"},parse:function(a){this.get("folder").reset();for(var b=0;b<a.folder_contents.length;b++)if("folder"===a.folder_contents[b].type){var c=new e(a.folder_contents[b]);this.get("folder").add(c)}else if("file"===a.folder_contents[b].type){var f=new d(a.folder_contents[b]);this.get("folder").add(f)}else console.error("Unknown folder item type encountered while parsing response.");return a}}),h=Backbone.Model.extend({urlRoot:Galaxy.root+"api/histories/"}),i=Backbone.Collection.extend({urlRoot:Galaxy.root+"api/histories/",initialize:function(a){this.id=a.id},url:function(){return this.urlRoot+this.id+"/contents"},model:h}),j=Backbone.Model.extend({urlRoot:Galaxy.root+"api/histories/"}),k=Backbone.Collection.extend({url:Galaxy.root+"api/histories",model:j}),l=Backbone.Model.extend({urlRoot:Galaxy.root+"api/remote_files"});return{Library:a,Libraries:b,Item:d,Ldda:d,FolderAsModel:e,Folder:f,FolderContainer:g,HistoryItem:h,HistoryContents:i,GalaxyHistory:j,GalaxyHistories:k,Jstree:l}});
define([],function(){var a=Backbone.Model.extend({urlRoot:Galaxy.root+"api/libraries/",isVisible:function(a){var b=!0;return!a&&this.get("deleted")&&(b=!1),b}}),b=Backbone.Collection.extend({urlRoot:Galaxy.root+"api/libraries",model:a,sort_key:"name",sort_order:null,initialize:function(a){a=a||{}},search:function(a){if(""==a)return this;var b=a.toLowerCase();return this.filter(function(a){return lowercase_name=a.get("name").toLowerCase(),-1!==lowercase_name.indexOf(b)})},getVisible:function(a,c){c=c||[];var d=new b(this.filter(function(b){return b.isVisible(a)}));return d},sortByNameAsc:function(){return this.comparator=function(a,b){return a.get("name").toLowerCase()>b.get("name").toLowerCase()?1:b.get("name").toLowerCase()>a.get("name").toLowerCase()?-1:0},this.sort(),this},sortByNameDesc:function(){return this.comparator=function(a,b){return a.get("name").toLowerCase()>b.get("name").toLowerCase()?-1:b.get("name").toLowerCase()>a.get("name").toLowerCase()?1:0},this.sort(),this}}),c=Backbone.Model.extend({}),d=c.extend({urlRoot:Galaxy.root+"api/libraries/datasets/"}),e=c.extend({urlRoot:Galaxy.root+"api/folders/"}),f=Backbone.Collection.extend({model:c,sortByNameAsc:function(){return this.comparator=function(a,b){return a.get("type")===b.get("type")?a.get("name").toLowerCase()>b.get("name").toLowerCase()?1:b.get("name").toLowerCase()>a.get("name").toLowerCase()?-1:0:"folder"===a.get("type")?-1:1},this.sort(),this},sortByNameDesc:function(){return this.comparator=function(a,b){return a.get("type")===b.get("type")?a.get("name").toLowerCase()>b.get("name").toLowerCase()?-1:b.get("name").toLowerCase()>a.get("name").toLowerCase()?1:0:"folder"===a.get("type")?-1:1},this.sort(),this}}),g=Backbone.Model.extend({defaults:{folder:new f,urlRoot:Galaxy.root+"api/folders/",id:"unknown"},parse:function(a){this.get("folder").reset();for(var b=0;b<a.folder_contents.length;b++)if("folder"===a.folder_contents[b].type){var c=new e(a.folder_contents[b]);this.get("folder").add(c)}else if("file"===a.folder_contents[b].type){var f=new d(a.folder_contents[b]);this.get("folder").add(f)}else Galaxy.emit.error("Unknown folder item type encountered while parsing response.");return a}}),h=Backbone.Model.extend({urlRoot:Galaxy.root+"api/histories/"}),i=Backbone.Collection.extend({urlRoot:Galaxy.root+"api/histories/",initialize:function(a){this.id=a.id},url:function(){return this.urlRoot+this.id+"/contents"},model:h}),j=Backbone.Model.extend({urlRoot:Galaxy.root+"api/histories/"}),k=Backbone.Collection.extend({url:Galaxy.root+"api/histories",model:j}),l=Backbone.Model.extend({urlRoot:Galaxy.root+"api/remote_files"});return{Library:a,Libraries:b,Item:d,Ldda:d,FolderAsModel:e,Folder:f,FolderContainer:g,HistoryItem:h,HistoryContents:i,GalaxyHistory:j,GalaxyHistories:k,Jstree:l}});
//# sourceMappingURL=../../../maps/mvc/library/library-model.js.map
static/style/blue/base.css
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static/style/blue/library.css
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