diff --git a/client/galaxy/scripts/mvc/library/library-folder-view.js b/client/galaxy/scripts/mvc/library/library-folder-view.js index 7e2d518c70e..802da16bc43 100644 --- a/client/galaxy/scripts/mvc/library/library-folder-view.js +++ b/client/galaxy/scripts/mvc/library/library-folder-view.js @@ -211,84 +211,107 @@ var FolderView = Backbone.View.extend({ }, templateFolder : function(){ - var tmpl_array = []; - // CONTAINER START - tmpl_array.push('
'); - - tmpl_array.push('
'); - tmpl_array.push(' '); - tmpl_array.push(' /datasets/<%- item.id %>/permissions">'); - tmpl_array.push(' '); - tmpl_array.push('
'); - tmpl_array.push('

'); - tmpl_array.push(' This dataset is unrestricted so everybody can access it. Just share the URL of this page. '); - tmpl_array.push(' '); - tmpl_array.push('

'); - tmpl_array.push('
'); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' <% if (item.get("file_ext")) { %>'); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' <% } %>'); - tmpl_array.push('
">Name<%= _.escape(item.get("name")) %>
Data type<%= _.escape(item.get("file_ext")) %>
'); - tmpl_array.push('
'); - - // CONTAINER END - tmpl_array.push('
'); - - return _.template(tmpl_array.join('')); + return _.template([ + '
', + '
', + '', + '/datasets/<%- item.id %>/permissions">', + '', + '', + '', + '
', + '

', + 'This dataset is unrestricted so everybody can access it. Just share the URL of this page. ', + ' ', + '

', + '
', + '', + '', + '', + '', + '', + '<% if (item.get("file_ext")) { %>', + '', + '', + '', + '', + '<% } %>', + '
">', + 'Name', + '', + '<%= _.escape(item.get("name")) %>', + '
Data type', + '<%= _.escape(item.get("file_ext")) %>', + '
', + '
', + '
' + ].join('')); }, templateFolderPermissions : function(){ - var tmpl_array = []; - // CONTAINER START - tmpl_array.push('
'); - - - tmpl_array.push('
'); - tmpl_array.push(' ">'); - tmpl_array.push('
'); - - tmpl_array.push('

Folder: <%= _.escape(folder.get("name")) %>

'); - - tmpl_array.push('
'); - tmpl_array.push('<% if (is_admin) { %>'); - tmpl_array.push('You are logged in as an administrator therefore you can manage any folder on this Galaxy instance. Please make sure you understand the consequences.'); - tmpl_array.push('<% } else { %>'); - tmpl_array.push('You can assign any number of roles to any of the following permission types. However please read carefully the implications of such actions.'); - tmpl_array.push('<% }%>'); - tmpl_array.push('
'); - - tmpl_array.push('
'); - - tmpl_array.push('

Folder permissions

'); - - tmpl_array.push('

Roles that can manage permissions on this folder

'); - tmpl_array.push('
'); - tmpl_array.push('
User with any of these roles can manage permissions on this folder.
'); - - tmpl_array.push('

Roles that can add items to this folder

'); - tmpl_array.push('
'); - tmpl_array.push('
User with any of these roles can add items to this folder (folders and datasets).
'); - - tmpl_array.push('

Roles that can modify this folder

'); - tmpl_array.push('
'); - tmpl_array.push('
User with any of these roles can modify this folder (name, etc.).
'); - - tmpl_array.push(''); - - tmpl_array.push('
'); - - // CONTAINER END - tmpl_array.push('
'); - - return _.template(tmpl_array.join('')); + return _.template([ + '
', + '
', + '">', + '', + '', + '
', + '

', + 'Folder: <%= _.escape(folder.get("name")) %>', + '

', + '
', + '<% if (is_admin) { %>', + 'You are logged in as an administrator therefore you can manage any folder on this Galaxy instance. Please make sure you understand the consequences.', + '<% } else { %>', + 'You can assign any number of roles to any of the following permission types. However please read carefully the implications of such actions.', + '<% }%>', + '
', + '
', + '

Folder permissions

', + '

', + 'Roles that can manage permissions on this folder', + '

', + '
', + '
', + 'User with any of these roles can manage permissions on this folder.', + '
', + '

', + 'Roles that can add items to this folder', + '

', + '
', + '
', + 'User with any of these roles can add items to this folder (folders and datasets).', + '
', + '

', + 'Roles that can modify this folder', + '

', + '
', + '
', + 'User with any of these roles can modify this folder (name, etc.).', + '
', + '', + '
', + '
' + ].join('')); } }); diff --git a/client/galaxy/scripts/mvc/library/library-folderlist-view.js b/client/galaxy/scripts/mvc/library/library-folderlist-view.js index 73862cd6042..5221125b371 100644 --- a/client/galaxy/scripts/mvc/library/library-folderlist-view.js +++ b/client/galaxy/scripts/mvc/library/library-folderlist-view.js @@ -254,7 +254,6 @@ var FolderListView = Backbone.View.extend({ * Currently supports only sorting by name. */ sortFolder: function(sort_by, order){ - console.log('sorting'); // default to asc sort by name if (sort_by === 'undefined' && order === 'undefined'){ return this.collection.sortByNameAsc(); @@ -345,49 +344,52 @@ var FolderListView = Backbone.View.extend({ }, templateFolder : function (){ - var tmpl_array = []; + return _.template([ + // BREADCRUMBS + '
    ', + '
  1. Libraries
    2. ', + '<% _.each(path, function(path_item) { %>', + '<% if (path_item[0] != id) { %>', + '
  2. <%- path_item[1] %>
    3. ', + '<% } else { %>', + '
  3. <%- path_item[1] %>
    4. ', + '<% } %>', + '<% }); %>', + '
', - // BREADCRUMBS - tmpl_array.push('
    '); - tmpl_array.push('
  1. Libraries
    2. '); - tmpl_array.push(' <% _.each(path, function(path_item) { %>'); - tmpl_array.push(' <% if (path_item[0] != id) { %>'); - tmpl_array.push('
  2. <%- path_item[1] %>
    3. '); - tmpl_array.push( '<% } else { %>'); - tmpl_array.push('
  3. <%- path_item[1] %>
    4. '); - tmpl_array.push(' <% } %>'); - tmpl_array.push(' <% }); %>'); - tmpl_array.push('
'); - - // FOLDER CONTENT - tmpl_array.push(''); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - - tmpl_array.push(' '); - tmpl_array.push('
name descriptiondata typesizetime updated (UTC)
" title="Go to parent folder" class="btn_open_folder btn btn-default btn-xs">..
'); - tmpl_array.push(''); - - return _.template(tmpl_array.join('')); + // FOLDER CONTENT + '', + '', + '', + '', + '', + '', + '', + '', + '', + ' ', + '', + '', + '', + '', + '', + '', + '', + '', + '', + '', + '', + '', + '', + '
name descriptiondata typesizetime updated (UTC)
', + '" title="Go to parent folder" class="btn_open_folder btn btn-default btn-xs">..', + '
', + '' + ].join('')); } }); diff --git a/client/galaxy/scripts/mvc/library/library-folderrow-view.js b/client/galaxy/scripts/mvc/library/library-folderrow-view.js index c67c1eeb1c3..67f450ba308 100644 --- a/client/galaxy/scripts/mvc/library/library-folderrow-view.js +++ b/client/galaxy/scripts/mvc/library/library-folderrow-view.js @@ -53,8 +53,8 @@ var FolderRowView = Backbone.View.extend({ template = this.templateRowFile(); } } else { - console.error('Unknown library item type found.'); - console.error(folder_item.get('type') || folder_item.get('model_class')); + Galaxy.emit.error('Unknown library item type found.'); + Galaxy.emit.error(folder_item.get('type') || folder_item.get('model_class')); } this.setElement(template({content_item: folder_item, edit_mode: this.options.edit_mode, button_config: this.options.visibility_config})); this.$el.show(); @@ -224,7 +224,7 @@ var FolderRowView = Backbone.View.extend({ return _.template([ '', '', - '', + '', '', '', '<% if(!edit_mode) { %>', @@ -245,15 +245,21 @@ var FolderRowView = Backbone.View.extend({ '', '', '<% if(edit_mode) { %>', // start edit mode - '', - '', + '', + '', '<% } else if (!edit_mode){%>', // start no edit mode '', '', '', '', '<% } %>', //end no edit mode @@ -263,67 +269,107 @@ var FolderRowView = Backbone.View.extend({ }, templateRowFile: function(){ - tmpl_array = []; - - tmpl_array.push(''); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' /datasets/<%- content_item.id %>" class="library-dataset"><%- content_item.get("name") %>'); // dataset - tmpl_array.push(' <%- content_item.get("message") %>'); - tmpl_array.push(' <%= _.escape(content_item.get("file_ext")) %>'); // data type - tmpl_array.push(' <%= _.escape(content_item.get("file_size")) %>'); // size - tmpl_array.push(' <%= _.escape(content_item.get("update_time")) %>'); // time updated - tmpl_array.push(' '); - tmpl_array.push(' <% if (content_item.get("is_unrestricted")) { %><% } %>'); - tmpl_array.push(' <% if (content_item.get("is_private")) { %><% } %>'); - tmpl_array.push(' <% if ((content_item.get("is_unrestricted") === false) && (content_item.get("is_private") === false)) { %><% } %>'); - tmpl_array.push(' <% if (content_item.get("can_manage")) { %>/datasets/<%- content_item.id %>/permissions"><% } %>'); - tmpl_array.push(' '); - tmpl_array.push(''); - - return _.template(tmpl_array.join('')); + return _.template([ + '', + '', + '', + '', + '', + '', + '', + '', + '/datasets/<%- content_item.id %>" class="library-dataset">', + '<%- content_item.get("name") %>', + '', + '', + '<%- content_item.get("message") %>', + '<%= _.escape(content_item.get("file_ext")) %>', + '<%= _.escape(content_item.get("file_size")) %>', + '<%= _.escape(content_item.get("update_time")) %>', + '', + '<% if (content_item.get("is_unrestricted")) { %>', + '', + '<% } %>', + '<% if (content_item.get("is_private")) { %>', + '', + '<% } %>', + '<% if ((content_item.get("is_unrestricted") === false) && (content_item.get("is_private") === false)) { %>', + '', + '<% } %>', + '<% if (content_item.get("can_manage")) { %>', + '/datasets/<%- content_item.id %>/permissions">', + '', + '', + '<% } %>', + '', + '' + ].join('')); }, templateRowDeletedFile: function(){ - tmpl_array = []; - - tmpl_array.push(''); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' <%- content_item.get("name") %>'); // dataset - tmpl_array.push(' <%- content_item.get("message") %>'); - tmpl_array.push(' <%= _.escape(content_item.get("file_ext")) %>'); // data type - tmpl_array.push(' <%= _.escape(content_item.get("file_size")) %>'); // size - tmpl_array.push(' <%= _.escape(content_item.get("update_time")) %>'); // time updated - tmpl_array.push(' '); - tmpl_array.push(''); - - return _.template(tmpl_array.join('')); + return _.template([ + '', + '', + '', + '', + '', + '', + '<%- content_item.get("name") %>', + '', + '', + '<%- content_item.get("message") %>', + '', + '', + '<%= _.escape(content_item.get("file_ext")) %>', + '', + '', + '<%= _.escape(content_item.get("file_size")) %>', + '', + '', + '<%= _.escape(content_item.get("update_time")) %>', + '', + '', + '', + '', + '', + '' + ].join('')); }, templateRowDeletedFolder: function(){ - tmpl_array = []; - - tmpl_array.push(''); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' <%- content_item.get("name") %>'); - tmpl_array.push(' '); - tmpl_array.push(' <%- content_item.get("description") %>'); - tmpl_array.push(' folder'); - tmpl_array.push(' '); - tmpl_array.push(' <%= _.escape(content_item.get("update_time")) %>'); // time updated - tmpl_array.push(' '); - tmpl_array.push(''); - - return _.template(tmpl_array.join('')); + return _.template([ + '', + '', + '', + '', + '', + '', + '<%- content_item.get("name") %>', + '', + '', + '<%- content_item.get("description") %>', + '', + '', + 'folder', + '', + '', + '', + '<%= _.escape(content_item.get("update_time")) %>', + '', + '', + '', + '', + '', + '' + ].join('')); } }); diff --git a/client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js b/client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js index aefd23e648d..26347b4715a 100644 --- a/client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js +++ b/client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js @@ -639,7 +639,7 @@ var FolderToolbarView = Backbone.View.extend({ this.modal.$el.find( '.modal-body' ).html( template( { folder_name : this.options.folder_name } ) ); break; case "deleting_datasets": - template = this.templateDeletingDatasetsProgressBar(); + template = this.templateDeletingItemsProgressBar(); this.modal.$el.find( '.modal-body' ).html( template() ); break; case "to_history": @@ -959,13 +959,13 @@ var FolderToolbarView = Backbone.View.extend({ deleteSelectedItems: function(){ var checkedValues = $('#folder_table').find(':checked'); if(checkedValues.length === 0){ - mod_toastr.info('You must select at least one dataset for deletion.'); + mod_toastr.info('You must select at least one item for deletion.'); } else { - var template = this.templateDeletingDatasetsProgressBar(); + var template = this.templateDeletingItemsProgressBar(); this.modal = Galaxy.modal; this.modal.show({ closing_events : true, - title : 'Deleting selected datasets', + title : 'Deleting selected items', body : template({}), buttons : { 'Close' : function() {Galaxy.modal.hide();} @@ -1038,7 +1038,7 @@ var FolderToolbarView = Backbone.View.extend({ this.modal = Galaxy.modal; this.modal.show({ closing_events : true, - title : 'Location Information', + title : 'Location Details', body : template({library: library, options: that.options}), buttons : { 'Close' : function() {Galaxy.modal.hide();} @@ -1090,10 +1090,10 @@ var FolderToolbarView = Backbone.View.extend({ '', '', - '', '<% if(mutiple_add_dataset_options) { %>', @@ -1127,8 +1127,8 @@ var FolderToolbarView = Backbone.View.extend({ '', ' to History', '', - '', '', - '', '', '', @@ -1160,7 +1160,6 @@ var FolderToolbarView = Backbone.View.extend({ '
', // paginator will append here '
' - ].join('')); }, @@ -1262,7 +1261,7 @@ var FolderToolbarView = Backbone.View.extend({ templateImportIntoHistoryProgressBar : function (){ return _.template([ '
', - 'Importing selected datasets to history <%= _.escape(history_name) %>', + 'Importing selected items to history <%= _.escape(history_name) %>', '
', '
', '
', @@ -1285,7 +1284,7 @@ var FolderToolbarView = Backbone.View.extend({ ].join('')); }, - templateDeletingDatasetsProgressBar: function (){ + templateDeletingItemsProgressBar: function (){ return _.template([ '
', '
', @@ -1423,7 +1422,7 @@ var FolderToolbarView = Backbone.View.extend({ '<% } %>', '', '', - 'showing ', + ' showing ', '', '<%- items_shown %>', '', diff --git a/client/galaxy/scripts/mvc/library/library-library-view.js b/client/galaxy/scripts/mvc/library/library-library-view.js index 1d9b5133cf2..9c04ebfa66e 100644 --- a/client/galaxy/scripts/mvc/library/library-library-view.js +++ b/client/galaxy/scripts/mvc/library/library-library-view.js @@ -242,95 +242,105 @@ var LibraryView = Backbone.View.extend({ }, templateLibrary : function(){ - var tmpl_array = []; - // CONTAINER START - tmpl_array.push('
'); - - tmpl_array.push('
'); - tmpl_array.push(' '); - tmpl_array.push(' /datasets/<%- item.id %>/permissions">'); - tmpl_array.push(' '); - tmpl_array.push('
'); - - // tmpl_array.push('<% if (item.get("is_unrestricted")) { %>'); - tmpl_array.push('

'); - tmpl_array.push(' This dataset is unrestricted so everybody can access it. Just share the URL of this page. '); - tmpl_array.push(' '); - tmpl_array.push('

'); - // tmpl_array.push('<% } %>'); - - tmpl_array.push('
'); - - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - - tmpl_array.push(' <% if (item.get("file_ext")) { %>'); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' <% } %>'); - - tmpl_array.push('
">Name<%= _.escape(item.get("name")) %>
Data type<%= _.escape(item.get("file_ext")) %>
'); - tmpl_array.push('
'); - - // CONTAINER END - tmpl_array.push('
'); - - return _.template(tmpl_array.join('')); + return _.template([ + '
', + '
', + '', + '/datasets/<%- item.id %>/permissions">', + '', + '', + '', + '
', + '

', + 'This dataset is unrestricted so everybody can access it. Just share the URL of this page. ', + ' ', + '

', + '
', + '', + '', + '', + '', + '', + '<% if (item.get("file_ext")) { %>', + '', + '', + '', + '', + '<% } %>', + '
">', + 'Name', + '', + '<%= _.escape(item.get("name")) %>', + '
Data type', + '<%= _.escape(item.get("file_ext")) %>', + '
', + '
', + '
', + ].join('')); }, templateLibraryPermissions : function(){ - var tmpl_array = []; - // CONTAINER START - tmpl_array.push('
'); - - - tmpl_array.push('
'); - tmpl_array.push(' '); - tmpl_array.push('
'); - - tmpl_array.push('

Library: <%= _.escape(library.get("name")) %>

'); - - tmpl_array.push('
'); - tmpl_array.push('<% if (is_admin) { %>'); - tmpl_array.push('You are logged in as an administrator therefore you can manage any library on this Galaxy instance. Please make sure you understand the consequences.'); - tmpl_array.push('<% } else { %>'); - tmpl_array.push('You can assign any number of roles to any of the following permission types. However please read carefully the implications of such actions.'); - tmpl_array.push('<% }%>'); - tmpl_array.push('
'); - - tmpl_array.push('
'); - - tmpl_array.push('

Library permissions

'); - - tmpl_array.push('

Roles that can access the library

'); - tmpl_array.push('
'); - tmpl_array.push('
User with any of these roles can access this library. If there are no access roles set on the library it is considered unrestricted.
'); - - tmpl_array.push('

Roles that can manage permissions on this library

'); - tmpl_array.push('
'); - tmpl_array.push('
User with any of these roles can manage permissions on this library (includes giving access).
'); - - tmpl_array.push('

Roles that can add items to this library

'); - tmpl_array.push('
'); - tmpl_array.push('
User with any of these roles can add items to this library (folders and datasets).
'); - - tmpl_array.push('

Roles that can modify this library

'); - tmpl_array.push('
'); - tmpl_array.push('
User with any of these roles can modify this library (name, synopsis, etc.).
'); - - tmpl_array.push(''); - - tmpl_array.push('
'); - - // CONTAINER END - tmpl_array.push('
'); - - return _.template(tmpl_array.join('')); + return _.template([ + '
', + '', + '

', + 'Library: <%= _.escape(library.get("name")) %>', + '

', + '
', + '<% if (is_admin) { %>', + 'You are logged in as an administrator therefore you can manage any library on this Galaxy instance. Please make sure you understand the consequences.', + '<% } else { %>', + 'You can assign any number of roles to any of the following permission types. However please read carefully the implications of such actions.', + '<% }%>', + '
', + '
', + '

Library permissions

', + '

Roles that can access the library

', + '
', + '
', + 'User with any of these roles can access this library. If there are no access roles set on the library it is considered unrestricted.', + '
', + '

Roles that can manage permissions on this library

', + '
', + '
', + 'User with any of these roles can manage permissions on this library (includes giving access).', + '
', + '

Roles that can add items to this library

', + '
', + '
', + 'User with any of these roles can add items to this library (folders and datasets).', + '
', + '

Roles that can modify this library

', + '
', + '
', + 'User with any of these roles can modify this library (name, synopsis, etc.).', + '
', + '', + '
', + '
', + ].join('')); } }); diff --git a/client/galaxy/scripts/mvc/library/library-librarylist-view.js b/client/galaxy/scripts/mvc/library/library-librarylist-view.js index e79f23fa8dc..7b921002486 100644 --- a/client/galaxy/scripts/mvc/library/library-librarylist-view.js +++ b/client/galaxy/scripts/mvc/library/library-librarylist-view.js @@ -25,7 +25,8 @@ var LibraryListView = Backbone.View.extend({ defaults: { page_count: null, - show_page: null + show_page: null, + all_fetched: false }, /** @@ -39,6 +40,7 @@ var LibraryListView = Backbone.View.extend({ this.modal = null; // collection of {Item}s this.collection = new mod_library_model.Libraries(); + this.collection.url = this.collection.urlRoot + '?deleted=false'; this.collection.fetch({ success: function(){ that.render(); @@ -119,6 +121,29 @@ var LibraryListView = Backbone.View.extend({ $( "#center" ).css( 'overflow','auto' ); }, + fetchDeleted: function(){ + if (this.options.all_fetched){ + this.render(); + } else{ + var that = this; + this.collection.url = this.collection.urlRoot + '?deleted=true'; + this.collection.fetch({ + remove: false, + success: function(){ + that.options.all_fetched = true; + that.render(); + }, + error: function( model, response ){ + if ( typeof response.responseJSON !== "undefined" ){ + mod_toastr.error( response.responseJSON.err_msg ); + } else { + mod_toastr.error( 'An error ocurred.' ); + } + } + }); + } + }, + /** * Render all given models as rows in the library list * @param {array} libraries_to_render array of library models to render @@ -197,32 +222,41 @@ var LibraryListView = Backbone.View.extend({ // MMMMMMMMMMMMMMMMMM templateLibraryList: function(){ - tmpl_array = []; - - tmpl_array.push('
'); - tmpl_array.push('<% if(length === 0) { %>'); - tmpl_array.push('<% if(search_term.length > 0) { %>'); - tmpl_array.push('
There are no libraries matching your search. Try different keyword.
'); - tmpl_array.push('<% } else{ %>'); - tmpl_array.push('
There are no libraries visible to you here. If you expected some to show up please consult the library security wikipage or visit the Galaxy support site.
'); - tmpl_array.push('<% }%>'); - tmpl_array.push('<% } else{ %>'); - tmpl_array.push(''); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - tmpl_array.push(' '); - // library item views will attach here - tmpl_array.push(' '); - tmpl_array.push('
name descriptionsynopsis
'); - tmpl_array.push('<% }%>'); - tmpl_array.push('
'); - - return _.template(tmpl_array.join('')); - }, + return _.template([ + '
', + '<% if(length === 0) { %>', + '<% if(search_term.length > 0) { %>', + '
', + 'There are no libraries matching your search. Try different keyword.', + '
', + '<% } else{ %>', + '
', + 'There are no libraries visible to you here. If you expected some to show up please consult the', + ' library security wikipage', + ' or visit the Galaxy support site.', + '
', + '<% }%>', + '<% } else{ %>', + '', + '', + '', + '', + ' ', + '', + '', + '', + // library item views will attach here + '', + '
', + '', + 'name', + '', + '', + 'descriptionsynopsis
', + '<% }%>', + '
' + ].join('')); + } }); diff --git a/client/galaxy/scripts/mvc/library/library-librarytoolbar-view.js b/client/galaxy/scripts/mvc/library/library-librarytoolbar-view.js index e12d4cc0de0..ea78d63bc57 100644 --- a/client/galaxy/scripts/mvc/library/library-librarytoolbar-view.js +++ b/client/galaxy/scripts/mvc/library/library-librarytoolbar-view.js @@ -148,7 +148,7 @@ var LibraryToolbarView = Backbone.View.extend({ includeDeletedChecked: function( event ){ if (event.target.checked){ Galaxy.libraries.preferences.set( { 'with_deleted': true } ); - Galaxy.libraries.libraryListView.render(); + Galaxy.libraries.libraryListView.fetchDeleted(); } else{ Galaxy.libraries.preferences.set( { 'with_deleted': false } ); Galaxy.libraries.libraryListView.render(); @@ -182,7 +182,9 @@ var LibraryToolbarView = Backbone.View.extend({ '<% if(admin_user === true) { %>', '
', '', '
', '', diff --git a/client/galaxy/scripts/mvc/library/library-model.js b/client/galaxy/scripts/mvc/library/library-model.js index 90eeed7e529..91f00cd92ba 100644 --- a/client/galaxy/scripts/mvc/library/library-model.js +++ b/client/galaxy/scripts/mvc/library/library-model.js @@ -19,7 +19,7 @@ define([], function() { }); var Libraries = Backbone.Collection.extend({ - url: Galaxy.root + 'api/libraries', + urlRoot: Galaxy.root + 'api/libraries', model: Library, @@ -182,7 +182,7 @@ define([], function() { var file_item = new Ldda(obj.folder_contents[i]) this.get("folder").add(file_item); } else{ - console.error('Unknown folder item type encountered while parsing response.'); + Galaxy.emit.error('Unknown folder item type encountered while parsing response.'); } }; return obj; diff --git a/client/galaxy/style/less/library.less b/client/galaxy/style/less/library.less index 5f550828d2f..f4789cc96de 100644 --- a/client/galaxy/style/less/library.less +++ b/client/galaxy/style/less/library.less 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Folder permissions

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'),a.push('
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Roles that can modify this folder

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'),a.push('
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'),a.push(''),a.push("
"),a.push("
"),_.template(a.join(""))}});return{FolderView:d}}); +define(["libs/toastr","mvc/library/library-model","mvc/ui/ui-select"],function(a,b,c){var d=Backbone.View.extend({el:"#center",model:null,options:{},events:{"click .toolbtn_save_permissions":"savePermissions"},initialize:function(a){this.options=_.extend(this.options,a),this.options.id&&this.fetchFolder()},fetchFolder:function(c){this.options=_.extend(this.options,c),this.model=new b.FolderAsModel({id:this.options.id});var d=this;this.model.fetch({success:function(){d.options.show_permissions?d.showPermissions():d.render()},error:function(b,c){"undefined"!=typeof c.responseJSON?a.error(c.responseJSON.err_msg+" Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}}):a.error("An error ocurred. Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}})}})},render:function(a){$(".tooltip").remove(),this.options=_.extend(this.options,a);var b=this.templateFolder();this.$el.html(b({item:this.model})),$(".peek").html(this.model.get("peek")),$("#center [data-toggle]").tooltip()},shareFolder:function(){a.info("Feature coming soon.")},goBack:function(){Galaxy.libraries.library_router.back()},showPermissions:function(b){this.options=_.extend(this.options,b),$(".tooltip").remove();var c=!1;Galaxy.user&&(c=Galaxy.user.isAdmin());var d=this.templateFolderPermissions();this.$el.html(d({folder:this.model,is_admin:c}));var e=this;void 0===this.options.fetched_permissions?$.get(Galaxy.root+"api/folders/"+e.id+"/permissions?scope=current").done(function(a){e.prepareSelectBoxes({fetched_permissions:a})}).fail(function(){a.error("An error occurred while attempting to fetch folder permissions.")}):this.prepareSelectBoxes({}),$("#center [data-toggle]").tooltip(),$("#center").css("overflow","auto")},_serializeRoles:function(a){for(var b=[],c=0;c=0;b--)ids_list.push(a[b].id);return ids_list},savePermissions:function(){var b=this,c=this._extractIds(this.addSelectObject.$el.select2("data")),d=this._extractIds(this.manageSelectObject.$el.select2("data")),e=this._extractIds(this.modifySelectObject.$el.select2("data"));$.post(Galaxy.root+"api/folders/"+b.id+"/permissions?action=set_permissions",{"add_ids[]":c,"manage_ids[]":d,"modify_ids[]":e}).done(function(c){b.showPermissions({fetched_permissions:c}),a.success("Permissions saved.")}).fail(function(){a.error("An error occurred while attempting to set folder permissions.")})},templateFolder:function(){return _.template(['
','
','",'/datasets/<%- item.id %>/permissions">','","",'","
","

","This dataset is unrestricted so everybody can access it. Just share the URL of this page. ",' ","

",'
','',"",'","","",'<% if (item.get("file_ext")) { %>',"",'',"","","<% } %>","
">',"Name","",'<%= _.escape(item.get("name")) %>',"
Data type",'<%= _.escape(item.get("file_ext")) %>',"
","
","
"].join(""))},templateFolderPermissions:function(){return _.template(['
','","

",'Folder: <%= _.escape(folder.get("name")) %>',"

",'
',"<% if (is_admin) { %>","You are logged in as an administrator therefore you can manage any folder on this Galaxy instance. Please make sure you understand the consequences.","<% } else { %>","You can assign any number of roles to any of the following permission types. However please read carefully the implications of such actions.","<% }%>","
",'
',"

Folder permissions

","

","Roles that can manage permissions on this folder","

",'
','
',"User with any of these roles can manage permissions on this folder.","
","

","Roles that can add items to this folder","

",'
','
',"User with any of these roles can add items to this folder (folders and datasets).","
","

","Roles that can modify this folder","

",'
','
',"User with any of these roles can modify this folder (name, etc.).","
",'","
","
"].join(""))}});return{FolderView:d}}); //# sourceMappingURL=../../../maps/mvc/library/library-folder-view.js.map \ No newline at end of file diff --git a/static/scripts/mvc/library/library-folderlist-view.js b/static/scripts/mvc/library/library-folderlist-view.js index 1a004c71170..01c732caef7 100644 --- a/static/scripts/mvc/library/library-folderlist-view.js +++ b/static/scripts/mvc/library/library-folderlist-view.js @@ -1,2 +1,2 @@ -define(["layout/masthead","utils/utils","libs/toastr","mvc/library/library-model","mvc/library/library-folderrow-view","mvc/library/library-dataset-view"],function(a,b,c,d,e){var f=Backbone.View.extend({el:"#folder_items_element",progress:0,progressStep:1,folderContainer:null,sort:"asc",events:{"click #select-all-checkboxes":"selectAll","click .dataset_row":"selectClickedRow","click .folder_row":"selectClickedRow","click .sort-folder-link":"sortColumnClicked"},collection:null,defaults:{include_deleted:!1,page_count:null,show_page:null},initialize:function(a){this.options=_.defaults(this.options||{},this.defaults,a),this.modal=null,this.rowViews={},this.collection=new d.Folder,this.listenTo(this.collection,"add",this.renderOne),this.listenTo(this.collection,"remove",this.removeOne),this.listenTo(this.collection,"sort",this.rePaint),this.listenTo(this.collection,"reset",this.rePaint),this.fetchFolder()},fetchFolder:function(a){var a=a||{};this.options.include_deleted=a.include_deleted;var b=this;this.folderContainer=new d.FolderContainer({id:this.options.id}),this.folderContainer.url=this.folderContainer.attributes.urlRoot+this.options.id+"/contents",this.options.include_deleted&&(this.folderContainer.url=this.folderContainer.url+"?include_deleted=true"),this.folderContainer.fetch({success:function(a){b.folder_container=a,b.render()},error:function(a,b){"undefined"!=typeof b.responseJSON?c.error(b.responseJSON.err_msg+" Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}}):c.error("An error ocurred. Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}})}})},render:function(a){this.options=_.extend(this.options,a);var b=this.templateFolder();$(".tooltip").hide();var d,e=this.folderContainer.attributes.metadata.full_path;d=1===e.length?0:e[e.length-2][0],this.$el.html(b({path:this.folderContainer.attributes.metadata.full_path,parent_library_id:this.folderContainer.attributes.metadata.parent_library_id,id:this.options.id,upper_folder_id:d,order:this.sort})),this.options.dataset_id?(row=_.findWhere(that.rowViews,{id:this.options.dataset_id}),row?row.showDatasetDetails():c.error("Requested dataset not found. Showing folder instead.")):((null===this.options.show_page||this.options.show_page<1)&&(this.options.show_page=1),this.paginate()),$("#center [data-toggle]").tooltip(),$("#center").css("overflow","auto")},paginate:function(a){this.options=_.extend(this.options,a),(null===this.options.show_page||this.options.show_page<1)&&(this.options.show_page=1),this.options.total_items_count=this.folder_container.get("folder").models.length,this.options.page_count=Math.ceil(this.options.total_items_count/Galaxy.libraries.preferences.get("folder_page_size"));var b=Galaxy.libraries.preferences.get("folder_page_size")*(this.options.show_page-1),c=null;c=this.folder_container.get("folder").models.slice(b,b+Galaxy.libraries.preferences.get("folder_page_size")),this.options.items_shown=c.length,Galaxy.libraries.preferences.get("folder_page_size")*this.options.show_page>this.options.total_items_count+Galaxy.libraries.preferences.get("folder_page_size")&&(c=[]),Galaxy.libraries.folderToolbarView.renderPaginator(this.options),this.collection.reset(c)},rePaint:function(a){this.options=_.extend(this.options,a),this.removeAllRows(),this.renderAll(),this.checkEmptiness()},addAll:function(a){_.each(a,function(a){Galaxy.libraries.folderListView.collection.add(a,{sort:!1})}),$("#center [data-toggle]").tooltip(),this.checkEmptiness(),this.postRender()},postRender:function(){var a=this.folderContainer.attributes.metadata;a.contains_file_or_folder="undefined"!=typeof this.collection.findWhere({type:"file"})||"undefined"!=typeof this.collection.findWhere({type:"folder"}),Galaxy.libraries.folderToolbarView.configureElements(a)},renderAll:function(){var a=this;_.each(this.collection.models.reverse(),function(b){a.renderOne(b)}),this.postRender()},renderOne:function(a){this.options.contains_file_or_folder=!0,a.set("folder_id",this.id);var b=new e.FolderRowView({model:a});this.rowViews[a.get("id")]=b,this.$el.find("#first_folder_item").after(b.el)},removeOne:function(a){this.$el.find("tr").filter(function(){return $(this).data("id")&&$(this).data("id")===a.id}).remove()},removeAllRows:function(){$(".library-row").remove()},checkEmptiness:function(){0===this.$el.find(".dataset_row").length&&0===this.$el.find(".folder_row").length?this.$el.find(".empty-folder-message").show():this.$el.find(".empty-folder-message").hide()},sortColumnClicked:function(a){a.preventDefault(),"asc"===this.sort?(this.sortFolder("name","desc"),this.sort="desc"):(this.sortFolder("name","asc"),this.sort="asc"),this.renderSortIcon()},sortFolder:function(a,b){if(console.log("sorting"),"undefined"===a&&"undefined"===b)return this.collection.sortByNameAsc();if("name"===a){if("asc"===b)return this.collection.sortByNameAsc();if("desc"===b)return this.collection.sortByNameDesc()}},selectAll:function(a){var b=a.target.checked;that=this,$(":checkbox","#folder_list_body").each(function(){this.checked=b,$row=$(this.parentElement.parentElement),b?that.makeDarkRow($row):that.makeWhiteRow($row)})},selectClickedRow:function(a){var b,c,d="";"input"===a.target.localName?(d=a.target,b=$(a.target.parentElement.parentElement),c="input"):"td"===a.target.localName&&(b=$(a.target.parentElement),d=b.find(":checkbox")[0],c="td"),d.checked?"td"===c?(d.checked="",this.makeWhiteRow(b)):"input"===c&&this.makeDarkRow(b):"td"===c?(d.checked="selected",this.makeDarkRow(b)):"input"===c&&this.makeWhiteRow(b)},makeDarkRow:function(a){a.removeClass("light").addClass("dark"),a.find("a").removeClass("light").addClass("dark"),a.find(".fa-file-o").removeClass("fa-file-o").addClass("fa-file"),a.find(".fa-folder-o").removeClass("fa-folder-o").addClass("fa-folder")},makeWhiteRow:function(a){a.removeClass("dark").addClass("light"),a.find("a").removeClass("dark").addClass("light"),a.find(".fa-file").removeClass("fa-file").addClass("fa-file-o"),a.find(".fa-folder").removeClass("fa-folder").addClass("fa-folder-o")},renderSortIcon:function(){"asc"===this.sort?$(".sort-icon").removeClass("fa-sort-alpha-desc").addClass("fa-sort-alpha-asc"):$(".sort-icon").removeClass("fa-sort-alpha-asc").addClass("fa-sort-alpha-desc")},templateFolder:function(){var a=[];return a.push('
    '),a.push('
  1. Libraries
    2. '),a.push(" <% _.each(path, function(path_item) { %>"),a.push(" <% if (path_item[0] != id) { %>"),a.push('
  2. <%- path_item[1] %>
    3. '),a.push("<% } else { %>"),a.push('
  3. <%- path_item[1] %>
    4. '),a.push(" <% } %>"),a.push(" <% }); %>"),a.push("
"),a.push(''),a.push(" "),a.push(' '),a.push(' '),a.push(' '),a.push(' '),a.push(' '),a.push(' '),a.push(' '),a.push(' '),a.push(" "),a.push(' '),a.push(' '),a.push(' '),a.push(" "),a.push(" "),a.push(" "),a.push(" "),a.push(" "),a.push(" "),a.push(" "),a.push(" "),a.push(" "),a.push("
name descriptiondata typesizetime updated (UTC)
" title="Go to parent folder" class="btn_open_folder btn btn-default btn-xs">..
"),a.push(''),_.template(a.join(""))}});return{FolderListView:f}}); +define(["layout/masthead","utils/utils","libs/toastr","mvc/library/library-model","mvc/library/library-folderrow-view","mvc/library/library-dataset-view"],function(a,b,c,d,e){var f=Backbone.View.extend({el:"#folder_items_element",progress:0,progressStep:1,folderContainer:null,sort:"asc",events:{"click #select-all-checkboxes":"selectAll","click .dataset_row":"selectClickedRow","click .folder_row":"selectClickedRow","click .sort-folder-link":"sortColumnClicked"},collection:null,defaults:{include_deleted:!1,page_count:null,show_page:null},initialize:function(a){this.options=_.defaults(this.options||{},this.defaults,a),this.modal=null,this.rowViews={},this.collection=new d.Folder,this.listenTo(this.collection,"add",this.renderOne),this.listenTo(this.collection,"remove",this.removeOne),this.listenTo(this.collection,"sort",this.rePaint),this.listenTo(this.collection,"reset",this.rePaint),this.fetchFolder()},fetchFolder:function(a){var a=a||{};this.options.include_deleted=a.include_deleted;var b=this;this.folderContainer=new d.FolderContainer({id:this.options.id}),this.folderContainer.url=this.folderContainer.attributes.urlRoot+this.options.id+"/contents",this.options.include_deleted&&(this.folderContainer.url=this.folderContainer.url+"?include_deleted=true"),this.folderContainer.fetch({success:function(a){b.folder_container=a,b.render()},error:function(a,b){"undefined"!=typeof b.responseJSON?c.error(b.responseJSON.err_msg+" Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}}):c.error("An error ocurred. Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}})}})},render:function(a){this.options=_.extend(this.options,a);var b=this.templateFolder();$(".tooltip").hide();var d,e=this.folderContainer.attributes.metadata.full_path;d=1===e.length?0:e[e.length-2][0],this.$el.html(b({path:this.folderContainer.attributes.metadata.full_path,parent_library_id:this.folderContainer.attributes.metadata.parent_library_id,id:this.options.id,upper_folder_id:d,order:this.sort})),this.options.dataset_id?(row=_.findWhere(that.rowViews,{id:this.options.dataset_id}),row?row.showDatasetDetails():c.error("Requested dataset not found. Showing folder instead.")):((null===this.options.show_page||this.options.show_page<1)&&(this.options.show_page=1),this.paginate()),$("#center [data-toggle]").tooltip(),$("#center").css("overflow","auto")},paginate:function(a){this.options=_.extend(this.options,a),(null===this.options.show_page||this.options.show_page<1)&&(this.options.show_page=1),this.options.total_items_count=this.folder_container.get("folder").models.length,this.options.page_count=Math.ceil(this.options.total_items_count/Galaxy.libraries.preferences.get("folder_page_size"));var b=Galaxy.libraries.preferences.get("folder_page_size")*(this.options.show_page-1),c=null;c=this.folder_container.get("folder").models.slice(b,b+Galaxy.libraries.preferences.get("folder_page_size")),this.options.items_shown=c.length,Galaxy.libraries.preferences.get("folder_page_size")*this.options.show_page>this.options.total_items_count+Galaxy.libraries.preferences.get("folder_page_size")&&(c=[]),Galaxy.libraries.folderToolbarView.renderPaginator(this.options),this.collection.reset(c)},rePaint:function(a){this.options=_.extend(this.options,a),this.removeAllRows(),this.renderAll(),this.checkEmptiness()},addAll:function(a){_.each(a,function(a){Galaxy.libraries.folderListView.collection.add(a,{sort:!1})}),$("#center [data-toggle]").tooltip(),this.checkEmptiness(),this.postRender()},postRender:function(){var a=this.folderContainer.attributes.metadata;a.contains_file_or_folder="undefined"!=typeof this.collection.findWhere({type:"file"})||"undefined"!=typeof this.collection.findWhere({type:"folder"}),Galaxy.libraries.folderToolbarView.configureElements(a)},renderAll:function(){var a=this;_.each(this.collection.models.reverse(),function(b){a.renderOne(b)}),this.postRender()},renderOne:function(a){this.options.contains_file_or_folder=!0,a.set("folder_id",this.id);var b=new e.FolderRowView({model:a});this.rowViews[a.get("id")]=b,this.$el.find("#first_folder_item").after(b.el)},removeOne:function(a){this.$el.find("tr").filter(function(){return $(this).data("id")&&$(this).data("id")===a.id}).remove()},removeAllRows:function(){$(".library-row").remove()},checkEmptiness:function(){0===this.$el.find(".dataset_row").length&&0===this.$el.find(".folder_row").length?this.$el.find(".empty-folder-message").show():this.$el.find(".empty-folder-message").hide()},sortColumnClicked:function(a){a.preventDefault(),"asc"===this.sort?(this.sortFolder("name","desc"),this.sort="desc"):(this.sortFolder("name","asc"),this.sort="asc"),this.renderSortIcon()},sortFolder:function(a,b){if("undefined"===a&&"undefined"===b)return this.collection.sortByNameAsc();if("name"===a){if("asc"===b)return this.collection.sortByNameAsc();if("desc"===b)return this.collection.sortByNameDesc()}},selectAll:function(a){var b=a.target.checked;that=this,$(":checkbox","#folder_list_body").each(function(){this.checked=b,$row=$(this.parentElement.parentElement),b?that.makeDarkRow($row):that.makeWhiteRow($row)})},selectClickedRow:function(a){var b,c,d="";"input"===a.target.localName?(d=a.target,b=$(a.target.parentElement.parentElement),c="input"):"td"===a.target.localName&&(b=$(a.target.parentElement),d=b.find(":checkbox")[0],c="td"),d.checked?"td"===c?(d.checked="",this.makeWhiteRow(b)):"input"===c&&this.makeDarkRow(b):"td"===c?(d.checked="selected",this.makeDarkRow(b)):"input"===c&&this.makeWhiteRow(b)},makeDarkRow:function(a){a.removeClass("light").addClass("dark"),a.find("a").removeClass("light").addClass("dark"),a.find(".fa-file-o").removeClass("fa-file-o").addClass("fa-file"),a.find(".fa-folder-o").removeClass("fa-folder-o").addClass("fa-folder")},makeWhiteRow:function(a){a.removeClass("dark").addClass("light"),a.find("a").removeClass("dark").addClass("light"),a.find(".fa-file").removeClass("fa-file").addClass("fa-file-o"),a.find(".fa-folder").removeClass("fa-folder").addClass("fa-folder-o")},renderSortIcon:function(){"asc"===this.sort?$(".sort-icon").removeClass("fa-sort-alpha-desc").addClass("fa-sort-alpha-asc"):$(".sort-icon").removeClass("fa-sort-alpha-asc").addClass("fa-sort-alpha-desc")},templateFolder:function(){return _.template(['
    ','
  1. Libraries
    2. ',"<% _.each(path, function(path_item) { %>","<% if (path_item[0] != id) { %>",'
  2. <%- path_item[1] %>
    3. ',"<% } else { %>",'
  3. <%- path_item[1] %>
    4. ',"<% } %>","<% }); %>","
",'',"",'','','','','','','',' ',"",'','',"","","","","","","","","","","
name descriptiondata typesizetime updated (UTC)
",'" title="Go to parent folder" class="btn_open_folder btn btn-default btn-xs">..',"
",'"].join(""))}});return{FolderListView:f}}); //# sourceMappingURL=../../../maps/mvc/library/library-folderlist-view.js.map \ No newline at end of file diff --git a/static/scripts/mvc/library/library-folderrow-view.js b/static/scripts/mvc/library/library-folderrow-view.js index 13d05ae9f5f..06f2570ff84 100644 --- a/static/scripts/mvc/library/library-folderrow-view.js +++ b/static/scripts/mvc/library/library-folderrow-view.js @@ -1,2 +1,2 @@ -define(["libs/toastr","mvc/library/library-model","mvc/library/library-dataset-view"],function(a,b,c){var d=Backbone.View.extend({events:{"click .undelete_dataset_btn":"undeleteDataset","click .undelete_folder_btn":"undeleteFolder","click .edit_folder_btn":"startModifications","click .cancel_folder_btn":"cancelModifications","click .save_folder_btn":"saveModifications"},defaults:{type:null,visibility_config:{edit_folder_btn:!0,save_folder_btn:!1,cancel_folder_btn:!1,permission_folder_btn:!0},edit_mode:!1},initialize:function(a){this.options=_.defaults(a||{},this.defaults),this.render(this.options)},render:function(a){this.options=_.extend(this.options,a);var b=this.options.model,c=null;return"folder"===b.get("type")||"LibraryFolder"===b.get("model_class")?(this.options.type="folder",this.prepareButtons(b),c=b.get("deleted")?this.templateRowDeletedFolder():this.templateRowFolder()):"file"===b.get("type")||"LibraryDatasetDatasetAssociation"===b.get("model_class")||"LibraryDataset"===b.get("model_class")?(this.options.type="file",c=b.get("deleted")?this.templateRowDeletedFile():this.templateRowFile()):(console.error("Unknown library item type found."),console.error(b.get("type")||b.get("model_class"))),this.setElement(c({content_item:b,edit_mode:this.options.edit_mode,button_config:this.options.visibility_config})),this.$el.show(),this},prepareButtons:function(a){vis_config=this.options.visibility_config,this.options.edit_mode===!1?(vis_config.save_folder_btn=!1,vis_config.cancel_folder_btn=!1,a.get("deleted")===!0?(vis_config.edit_folder_btn=!1,vis_config.permission_folder_btn=!1):a.get("deleted")===!1&&(vis_config.save_folder_btn=!1,vis_config.cancel_folder_btn=!1,a.get("can_modify")===!0&&(vis_config.edit_folder_btn=!0),a.get("can_manage")===!0&&(vis_config.permission_folder_btn=!0))):this.options.edit_mode===!0&&(vis_config.edit_folder_btn=!1,vis_config.permission_folder_btn=!1,vis_config.save_folder_btn=!0,vis_config.cancel_folder_btn=!0),this.options.visibility_config=vis_config},showDatasetDetails:function(){Galaxy.libraries.datasetView=new c.LibraryDatasetView({id:this.id})},undeleteDataset:function(c){$(".tooltip").hide();var d=this,e=$(c.target).closest("tr").data("id"),f=Galaxy.libraries.folderListView.collection.get(e);f.url=f.urlRoot+f.id+"?undelete=true",f.destroy({success:function(c,f){Galaxy.libraries.folderListView.collection.remove(e);var g=new b.Item(f);Galaxy.libraries.folderListView.collection.add(g),Galaxy.libraries.folderListView.collection.sortByNameAsc(),a.success("Dataset undeleted. Click this to see it.","",{onclick:function(){var a=d.model.get("folder_id");window.location="#folders/"+a+"/datasets/"+d.id}})},error:function(b,c){a.error("undefined"!=typeof c.responseJSON?"Dataset was not undeleted. "+c.responseJSON.err_msg:"An error occured! Dataset was not undeleted. Please try again.")}})},undeleteFolder:function(c){$(".tooltip").hide();var d=$(c.target).closest("tr").data("id"),e=Galaxy.libraries.folderListView.collection.get(d);e.url=e.urlRoot+e.id+"?undelete=true",e.destroy({success:function(c,e){Galaxy.libraries.folderListView.collection.remove(d);var f=new b.FolderAsModel(e);Galaxy.libraries.folderListView.collection.add(f),Galaxy.libraries.folderListView.collection.sortByNameAsc(),a.success("Folder undeleted.")},error:function(b,c){a.error("undefined"!=typeof c.responseJSON?"Folder was not undeleted. "+c.responseJSON.err_msg:"An error occured! Folder was not undeleted. Please try again.")}})},startModifications:function(){this.options.edit_mode=!0,this.repaint()},cancelModifications:function(){this.options.edit_mode=!1,this.repaint()},saveModifications:function(){var b=Galaxy.libraries.folderListView.collection.get(this.$el.data("id")),c=!1,d=this.$el.find(".input_folder_name").val();if("undefined"!=typeof d&&d!==b.get("name")){if(!(d.length>2))return void a.warning("Folder name has to be at least 3 characters long.");b.set("name",d),c=!0}var e=this.$el.find(".input_folder_description").val();if("undefined"!=typeof e&&e!==b.get("description")&&(b.set("description",e),c=!0),c){var f=this;b.save(null,{patch:!0,success:function(b){f.options.edit_mode=!1,f.repaint(b),a.success("Changes to folder saved.")},error:function(b,c){a.error("undefined"!=typeof c.responseJSON?c.responseJSON.err_msg:"An error occured while attempting to update the folder.")}})}else this.options.edit_mode=!1,this.repaint(b),a.info("Nothing has changed.")},repaint:function(){$(".tooltip").hide();var a=this.$el;this.render(),a.replaceWith(this.$el),this.$el.find("[data-toggle]").tooltip()},templateRowFolder:function(){return _.template(['',"",'',"",'',"<% if(!edit_mode) { %>","",'<%- content_item.get("name") %>',"","",'<%- content_item.get("description") %>',"","<% } else if(edit_mode){ %>",'','',"<% } %>","folder","","",'<%= _.escape(content_item.get("update_time")) %>',"","","<% if(edit_mode) { %>",'','',"<% } else if (!edit_mode){%>",'",'','","","<% } %>","",""].join(""))},templateRowFile:function(){return tmpl_array=[],tmpl_array.push(''),tmpl_array.push(" "),tmpl_array.push(' '),tmpl_array.push(" "),tmpl_array.push(' '),tmpl_array.push(' /datasets/<%- content_item.id %>" class="library-dataset"><%- content_item.get("name") %>'),tmpl_array.push(' <%- content_item.get("message") %>'),tmpl_array.push(' <%= _.escape(content_item.get("file_ext")) %>'),tmpl_array.push(' <%= _.escape(content_item.get("file_size")) %>'),tmpl_array.push(' <%= _.escape(content_item.get("update_time")) %>'),tmpl_array.push(" "),tmpl_array.push(' <% if (content_item.get("is_unrestricted")) { %><% } %>'),tmpl_array.push(' <% if (content_item.get("is_private")) { %><% } %>'),tmpl_array.push(' <% if ((content_item.get("is_unrestricted") === false) && (content_item.get("is_private") === false)) { %><% } %>'),tmpl_array.push(' <% if (content_item.get("can_manage")) { %>/datasets/<%- content_item.id %>/permissions"><% } %>'),tmpl_array.push(" "),tmpl_array.push(""),_.template(tmpl_array.join(""))},templateRowDeletedFile:function(){return tmpl_array=[],tmpl_array.push(''),tmpl_array.push(" "),tmpl_array.push(' '),tmpl_array.push(" "),tmpl_array.push(" "),tmpl_array.push(' <%- content_item.get("name") %>'),tmpl_array.push(' <%- content_item.get("message") %>'),tmpl_array.push(' <%= _.escape(content_item.get("file_ext")) %>'),tmpl_array.push(' <%= _.escape(content_item.get("file_size")) %>'),tmpl_array.push(' <%= _.escape(content_item.get("update_time")) %>'),tmpl_array.push(' '),tmpl_array.push(""),_.template(tmpl_array.join(""))},templateRowDeletedFolder:function(){return tmpl_array=[],tmpl_array.push(''),tmpl_array.push(" "),tmpl_array.push(' '),tmpl_array.push(" "),tmpl_array.push(" "),tmpl_array.push(' '),tmpl_array.push(' <%- content_item.get("name") %>'),tmpl_array.push(" "),tmpl_array.push(' <%- content_item.get("description") %>'),tmpl_array.push(" folder"),tmpl_array.push(" "),tmpl_array.push(' <%= _.escape(content_item.get("update_time")) %>'),tmpl_array.push(' '),tmpl_array.push(""),_.template(tmpl_array.join(""))}});return{FolderRowView:d}}); +define(["libs/toastr","mvc/library/library-model","mvc/library/library-dataset-view"],function(a,b,c){var d=Backbone.View.extend({events:{"click .undelete_dataset_btn":"undeleteDataset","click .undelete_folder_btn":"undeleteFolder","click .edit_folder_btn":"startModifications","click .cancel_folder_btn":"cancelModifications","click .save_folder_btn":"saveModifications"},defaults:{type:null,visibility_config:{edit_folder_btn:!0,save_folder_btn:!1,cancel_folder_btn:!1,permission_folder_btn:!0},edit_mode:!1},initialize:function(a){this.options=_.defaults(a||{},this.defaults),this.render(this.options)},render:function(a){this.options=_.extend(this.options,a);var b=this.options.model,c=null;return"folder"===b.get("type")||"LibraryFolder"===b.get("model_class")?(this.options.type="folder",this.prepareButtons(b),c=b.get("deleted")?this.templateRowDeletedFolder():this.templateRowFolder()):"file"===b.get("type")||"LibraryDatasetDatasetAssociation"===b.get("model_class")||"LibraryDataset"===b.get("model_class")?(this.options.type="file",c=b.get("deleted")?this.templateRowDeletedFile():this.templateRowFile()):(Galaxy.emit.error("Unknown library item type found."),Galaxy.emit.error(b.get("type")||b.get("model_class"))),this.setElement(c({content_item:b,edit_mode:this.options.edit_mode,button_config:this.options.visibility_config})),this.$el.show(),this},prepareButtons:function(a){vis_config=this.options.visibility_config,this.options.edit_mode===!1?(vis_config.save_folder_btn=!1,vis_config.cancel_folder_btn=!1,a.get("deleted")===!0?(vis_config.edit_folder_btn=!1,vis_config.permission_folder_btn=!1):a.get("deleted")===!1&&(vis_config.save_folder_btn=!1,vis_config.cancel_folder_btn=!1,a.get("can_modify")===!0&&(vis_config.edit_folder_btn=!0),a.get("can_manage")===!0&&(vis_config.permission_folder_btn=!0))):this.options.edit_mode===!0&&(vis_config.edit_folder_btn=!1,vis_config.permission_folder_btn=!1,vis_config.save_folder_btn=!0,vis_config.cancel_folder_btn=!0),this.options.visibility_config=vis_config},showDatasetDetails:function(){Galaxy.libraries.datasetView=new c.LibraryDatasetView({id:this.id})},undeleteDataset:function(c){$(".tooltip").hide();var d=this,e=$(c.target).closest("tr").data("id"),f=Galaxy.libraries.folderListView.collection.get(e);f.url=f.urlRoot+f.id+"?undelete=true",f.destroy({success:function(c,f){Galaxy.libraries.folderListView.collection.remove(e);var g=new b.Item(f);Galaxy.libraries.folderListView.collection.add(g),Galaxy.libraries.folderListView.collection.sortByNameAsc(),a.success("Dataset undeleted. Click this to see it.","",{onclick:function(){var a=d.model.get("folder_id");window.location="#folders/"+a+"/datasets/"+d.id}})},error:function(b,c){a.error("undefined"!=typeof c.responseJSON?"Dataset was not undeleted. "+c.responseJSON.err_msg:"An error occured! Dataset was not undeleted. Please try again.")}})},undeleteFolder:function(c){$(".tooltip").hide();var d=$(c.target).closest("tr").data("id"),e=Galaxy.libraries.folderListView.collection.get(d);e.url=e.urlRoot+e.id+"?undelete=true",e.destroy({success:function(c,e){Galaxy.libraries.folderListView.collection.remove(d);var f=new b.FolderAsModel(e);Galaxy.libraries.folderListView.collection.add(f),Galaxy.libraries.folderListView.collection.sortByNameAsc(),a.success("Folder undeleted.")},error:function(b,c){a.error("undefined"!=typeof c.responseJSON?"Folder was not undeleted. "+c.responseJSON.err_msg:"An error occured! Folder was not undeleted. Please try again.")}})},startModifications:function(){this.options.edit_mode=!0,this.repaint()},cancelModifications:function(){this.options.edit_mode=!1,this.repaint()},saveModifications:function(){var b=Galaxy.libraries.folderListView.collection.get(this.$el.data("id")),c=!1,d=this.$el.find(".input_folder_name").val();if("undefined"!=typeof d&&d!==b.get("name")){if(!(d.length>2))return void a.warning("Folder name has to be at least 3 characters long.");b.set("name",d),c=!0}var e=this.$el.find(".input_folder_description").val();if("undefined"!=typeof e&&e!==b.get("description")&&(b.set("description",e),c=!0),c){var f=this;b.save(null,{patch:!0,success:function(b){f.options.edit_mode=!1,f.repaint(b),a.success("Changes to folder saved.")},error:function(b,c){a.error("undefined"!=typeof c.responseJSON?c.responseJSON.err_msg:"An error occured while attempting to update the folder.")}})}else this.options.edit_mode=!1,this.repaint(b),a.info("Nothing has changed.")},repaint:function(){$(".tooltip").hide();var a=this.$el;this.render(),a.replaceWith(this.$el),this.$el.find("[data-toggle]").tooltip()},templateRowFolder:function(){return _.template(['',"",'',"",'',"<% if(!edit_mode) { %>","",'<%- content_item.get("name") %>',"","",'<%- content_item.get("description") %>',"","<% } else if(edit_mode){ %>",'','',"<% } %>","folder","","",'<%= _.escape(content_item.get("update_time")) %>',"","","<% if(edit_mode) { %>",'",'","<% } else if (!edit_mode){%>",'",'','","","<% } %>","",""].join(""))},templateRowFile:function(){return _.template(['',"",'',"",'','',"","",'/datasets/<%- content_item.id %>" class="library-dataset">','<%- content_item.get("name") %>',"","",'<%- content_item.get("message") %>','<%= _.escape(content_item.get("file_ext")) %>','<%= _.escape(content_item.get("file_size")) %>','<%= _.escape(content_item.get("update_time")) %>',"",'<% if (content_item.get("is_unrestricted")) { %>','',"<% } %>",'<% if (content_item.get("is_private")) { %>','',"<% } %>",'<% if ((content_item.get("is_unrestricted") === false) && (content_item.get("is_private") === false)) { %>','',"<% } %>",'<% if (content_item.get("can_manage")) { %>','/datasets/<%- content_item.id %>/permissions">','","","<% } %>","",""].join(""))},templateRowDeletedFile:function(){return _.template(['',"",'',"","",'','<%- content_item.get("name") %>',"","",'<%- content_item.get("message") %>',"","",'<%= _.escape(content_item.get("file_ext")) %>',"","",'<%= _.escape(content_item.get("file_size")) %>',"","",'<%= _.escape(content_item.get("update_time")) %>',"","",'','","",""].join(""))},templateRowDeletedFolder:function(){return _.template(['',"",'',"","",'','<%- content_item.get("name") %>',"","",'<%- content_item.get("description") %>',"","","folder","","","",'<%= _.escape(content_item.get("update_time")) %>',"","",'','","",""].join(""))}});return{FolderRowView:d}}); //# sourceMappingURL=../../../maps/mvc/library/library-folderrow-view.js.map \ No newline at end of file diff --git a/static/scripts/mvc/library/library-foldertoolbar-view.js b/static/scripts/mvc/library/library-foldertoolbar-view.js index d625a950629..e82e6a0a04a 100644 --- a/static/scripts/mvc/library/library-foldertoolbar-view.js +++ b/static/scripts/mvc/library/library-foldertoolbar-view.js @@ -1,4 +1,3 @@ -define(["layout/masthead","utils/utils","libs/toastr","mvc/library/library-model","mvc/ui/ui-select"],function(a,b,c,d,e){var f=Backbone.View.extend({el:"#center",events:{"click #toolbtn_create_folder":"createFolderFromModal","click #toolbtn_bulk_import":"modalBulkImport","click #include_deleted_datasets_chk":"checkIncludeDeleted","click #toolbtn_bulk_delete":"deleteSelectedItems","click .toolbtn-show-locinfo":"showLocInfo","click .page_size_prompt":"showPageSizePrompt"},defaults:{can_add_library_item:!1,contains_file_or_folder:!1,chain_call_control:{total_number:0,failed_number:0},disabled_jstree_element:"folders"},modal:null,jstree:null,histories:null,select_genome:null,select_extension:null,list_extensions:[],auto:{id:"auto",text:"Auto-detect",description:"This system will try to detect the file type automatically. If your file is not detected properly as one of the known formats, it most likely means that it has some format problems (e.g., different number of columns on different rows). You can still coerce the system to set your data to the format you think it should be. You can also upload compressed files, which will automatically be decompressed."},list_genomes:[],initialize:function(a){this.options=_.defaults(a||{},this.defaults),this.fetchExtAndGenomes(),this.render()},render:function(a){this.options=_.extend(this.options,a);var b=this.templateToolBar(),c={id:this.options.id,is_admin:!1,is_anonym:!0,mutiple_add_dataset_options:!1};Galaxy.user&&(c.is_admin=Galaxy.user.isAdmin(),c.is_anonym=Galaxy.user.isAnonymous(),(null!==Galaxy.config.user_library_import_dir||Galaxy.config.allow_library_path_paste!==!1||null!==Galaxy.config.library_import_dir)&&(c.mutiple_add_dataset_options=!0)),this.$el.html(b(c))},renderPaginator:function(a){this.options=_.extend(this.options,a);var b=this.templatePaginator();$("body").find(".folder-paginator").html(b({id:this.options.id,show_page:parseInt(this.options.show_page),page_count:parseInt(this.options.page_count),total_items_count:this.options.total_items_count,items_shown:this.options.items_shown}))},configureElements:function(a){this.options=_.extend(this.options,a),this.options.can_add_library_item===!0?$(".add-library-items").show():$(".add-library-items").hide(),this.options.contains_file_or_folder===!0&&Galaxy.user?Galaxy.user.isAnonymous()?($(".dataset-manipulation").show(),$(".logged-dataset-manipulation").hide()):($(".logged-dataset-manipulation").show(),$(".dataset-manipulation").show()):($(".logged-dataset-manipulation").hide(),$(".dataset-manipulation").hide()),this.$el.find("[data-toggle]").tooltip()},createFolderFromModal:function(a){a.preventDefault(),a.stopPropagation();var b=this,c=this.templateNewFolderInModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:"Create New Folder",body:c(),buttons:{Create:function(){b.create_new_folder_event()},Close:function(){Galaxy.modal.hide()}}})},create_new_folder_event:function(){var a=this.serialize_new_folder();if(this.validate_new_folder(a)){var b=new d.FolderAsModel;url_items=Backbone.history.fragment.split("/"),current_folder_id=url_items[url_items.length-1],b.url=b.urlRoot+current_folder_id,b.save(a,{success:function(a){Galaxy.modal.hide(),c.success("Folder created."),a.set({type:"folder"}),Galaxy.libraries.folderListView.collection.add(a)},error:function(a,b){Galaxy.modal.hide(),c.error("undefined"!=typeof b.responseJSON?b.responseJSON.err_msg:"An error ocurred.")}})}else c.error("Folder's name is missing.");return!1},serialize_new_folder:function(){return{name:$("input[name='Name']").val(),description:$("input[name='Description']").val()}},validate_new_folder:function(a){return""!==a.name},modalBulkImport:function(){var a=$("#folder_table").find(":checked");0===a.length?c.info("You must select some datasets first."):this.refreshUserHistoriesList(function(a){var b=a.templateBulkImportInModal();a.modal=Galaxy.modal,a.modal.show({closing_events:!0,title:"Import into History",body:b({histories:a.histories.models}),buttons:{Import:function(){a.importAllIntoHistory()},Close:function(){Galaxy.modal.hide()}}})})},refreshUserHistoriesList:function(a){var b=this;this.histories=new d.GalaxyHistories,this.histories.fetch({success:function(){a(b)},error:function(a,b){c.error("undefined"!=typeof b.responseJSON?b.responseJSON.err_msg:"An error ocurred.")}})},importAllIntoHistory:function(){this.modal.disableButton("Import");var a=this.modal.$("input[name=history_name]").val(),b=this;if(""!==a)$.post(Galaxy.root+"api/histories",{name:a}).done(function(a){b.options.last_used_history_id=a.id,b.processImportToHistory(a.id,a.name)}).fail(function(){c.error("An error ocurred.")}).always(function(){b.modal.enableButton("Import")});else{var d=$("select[name=dataset_import_bulk] option:selected").val();this.options.last_used_history_id=d;var e=$("select[name=dataset_import_bulk] option:selected").text();this.processImportToHistory(d,e),this.modal.enableButton("Import")}},processImportToHistory:function(a,b){var c=[],e=[];$("#folder_table").find(":checked").each(function(){""!==$(this.parentElement.parentElement).data("id")&&this.parentElement.parentElement.classList.contains("dataset_row")?c.push($(this.parentElement.parentElement).data("id")):""!==$(this.parentElement.parentElement).data("id")&&this.parentElement.parentElement.classList.contains("folder_row")&&e.push($(this.parentElement.parentElement).data("id"))});for(var f=[],g=c.length-1;g>=0;g--){var h=c[g],i=new d.HistoryItem;i.url=i.urlRoot+a+"/contents",i.content=h,i.source="library",f.push(i)}for(var g=e.length-1;g>=0;g--){var j=e[g],i=new d.HistoryItem;i.url=i.urlRoot+a+"/contents",i.content=j,i.source="library_folder",f.push(i)}this.initChainCallControl({length:f.length,action:"to_history",history_name:b}),jQuery.getJSON(Galaxy.root+"history/set_as_current?id="+a),this.chainCallImportingIntoHistory(f,b)},updateProgress:function(){this.progress+=this.progressStep,$(".progress-bar-import").width(Math.round(this.progress)+"%"),txt_representation=Math.round(this.progress)+"% Complete",$(".completion_span").text(txt_representation)},download:function(a,b){var c=[],d=[];$("#folder_table").find(":checked").each(function(){""!==$(this.parentElement.parentElement).data("id")&&this.parentElement.parentElement.classList.contains("dataset_row")?c.push($(this.parentElement.parentElement).data("id")):""!==$(this.parentElement.parentElement).data("id")&&this.parentElement.parentElement.classList.contains("folder_row")&&d.push($(this.parentElement.parentElement).data("id"))});var e=Galaxy.root+"api/libraries/datasets/download/"+b,f={ld_ids:c,folder_ids:d};this.processDownload(e,f,"get")},processDownload:function(a,b,d){if(a&&b){b="string"==typeof b?b:$.param(b);var e="";$.each(b.split("&"),function(){var a=this.split("=");e+=''}),$('
'+e+"
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"].join(""))},templateNewFolderInModal:function(){return _.template(['
',"
",'','',"
","
"].join(""))},templateBulkImportInModal:function(){return _.template(["
",'
',"Select history: ",'","
",'
',"or create new: ",'',"","
","
"].join(""))},templateImportIntoHistoryProgressBar:function(){return _.template(['
',"Importing selected items to history <%= _.escape(history_name) %>","
",'
','
','0% Complete',"
","
"].join(""))},templateAddingDatasetsProgressBar:function(){return _.template(['
',"Adding selected datasets to library folder <%= _.escape(folder_name) %>","
",'
','
','0% Complete',"
","
"].join(""))},templateDeletingItemsProgressBar:function(){return _.template(['
',"
",'
','
','0% Complete',"
","
"].join(""))},templateBrowserModal:function(){return _.template(['
','
All files you select will be imported into the current folder ignoring their folder structure.
','','
','",'","
",'
','",'","
",'",'","
",'
',"
","
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You can set extension type and genome for all imported datasets at once:

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",'Type: ','Genome: ',"
","
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All files within the given folders and their subfolders will be imported into the current folder.
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','",'","
",'',"
","

You can set extension type and genome for all imported datasets at once:

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",'Type: ','Genome: ',"
","
"].join(""))},templateAddFilesFromHistory:function(){return _.template(['
',"
","Select history: ",'","
","
",'
',"
","
"].join(""))},templateHistoryContents:function(){ +return _.template(["Choose the datasets to import:","
    ","<% _.each(history_contents, function(history_item) { %>",'
  • ">',' <%= _.escape(history_item.get("hid")) %>: <%= _.escape(history_item.get("name")) %>',"
    • ","<% }); %>","
"].join(""))},templatePaginator:function(){return _.template(['",""," showing ",'',"<%- items_shown %>",""," of <%- total_items_count %> items",""].join(""))}});return{FolderToolbarView:f}}); //# sourceMappingURL=../../../maps/mvc/library/library-foldertoolbar-view.js.map \ No newline at end of file diff --git a/static/scripts/mvc/library/library-library-view.js b/static/scripts/mvc/library/library-library-view.js index 83dec37a9a2..cbb7c2bf6ec 100644 --- a/static/scripts/mvc/library/library-library-view.js +++ b/static/scripts/mvc/library/library-library-view.js @@ -1,2 +1,2 @@ -define(["libs/toastr","mvc/library/library-model","mvc/ui/ui-select"],function(a,b,c){var d=Backbone.View.extend({el:"#center",model:null,options:{},events:{"click .toolbtn_save_permissions":"savePermissions"},initialize:function(a){this.options=_.extend(this.options,a),this.options.id&&this.fetchLibrary()},fetchLibrary:function(c){this.options=_.extend(this.options,c),this.model=new b.Library({id:this.options.id});var d=this;this.model.fetch({success:function(){d.options.show_permissions?d.showPermissions():d.render()},error:function(b,c){"undefined"!=typeof c.responseJSON?a.error(c.responseJSON.err_msg+" Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}}):a.error("An error ocurred. Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}})}})},render:function(a){$(".tooltip").remove(),this.options=_.extend(this.options,a);var b=this.templateLibrary();this.$el.html(b({item:this.model})),$("#center [data-toggle]").tooltip()},shareDataset:function(){a.info("Feature coming soon.")},goBack:function(){Galaxy.libraries.library_router.back()},showPermissions:function(b){this.options=_.extend(this.options,b),$(".tooltip").remove(),void 0!==this.options.fetched_permissions&&this.model.set(0===this.options.fetched_permissions.access_library_role_list.length?{is_unrestricted:!0}:{is_unrestricted:!1});var c=!1;Galaxy.user&&(c=Galaxy.user.isAdmin());var d=this.templateLibraryPermissions();this.$el.html(d({library:this.model,is_admin:c}));var e=this;void 0===this.options.fetched_permissions?$.get(Galaxy.root+"api/libraries/"+e.id+"/permissions?scope=current").done(function(a){e.prepareSelectBoxes({fetched_permissions:a})}).fail(function(){a.error("An error occurred while attempting to fetch library permissions.")}):this.prepareSelectBoxes({}),$("#center [data-toggle]").tooltip(),$("#center").css("overflow","auto")},_serializeRoles:function(a){for(var b=[],c=0;c=0;b--)ids_list.push(a[b].id);return ids_list},savePermissions:function(){var b=this,c=this._extractIds(this.accessSelectObject.$el.select2("data")),d=this._extractIds(this.addSelectObject.$el.select2("data")),e=this._extractIds(this.manageSelectObject.$el.select2("data")),f=this._extractIds(this.modifySelectObject.$el.select2("data"));$.post(Galaxy.root+"api/libraries/"+b.id+"/permissions?action=set_permissions",{"access_ids[]":c,"add_ids[]":d,"manage_ids[]":e,"modify_ids[]":f}).done(function(c){b.showPermissions({fetched_permissions:c}),a.success("Permissions saved.")}).fail(function(){a.error("An error occurred while attempting to set library permissions.")})},templateLibrary:function(){var a=[];return a.push('
'),a.push('
'),a.push(' '),a.push(' /datasets/<%- item.id %>/permissions">'),a.push(' '),a.push("
"),a.push("

"),a.push(" This dataset is unrestricted so everybody can access it. Just share the URL of this page. "),a.push(' '),a.push("

"),a.push('
'),a.push(' '),a.push(" "),a.push(' '),a.push(' '),a.push(" "),a.push(' <% if (item.get("file_ext")) { %>'),a.push(" "),a.push(' '),a.push(' '),a.push(" "),a.push(" <% } %>"),a.push("
">Name<%= _.escape(item.get("name")) %>
Data type<%= _.escape(item.get("file_ext")) %>
"),a.push("
"),a.push("
"),_.template(a.join(""))},templateLibraryPermissions:function(){var a=[];return a.push('
'),a.push('
'),a.push(' '),a.push("
"),a.push('

Library: <%= _.escape(library.get("name")) %>

'),a.push('
'),a.push("<% if (is_admin) { %>"),a.push("You are logged in as an administrator therefore you can manage any library on this Galaxy instance. Please make sure you understand the consequences."),a.push("<% } else { %>"),a.push("You can assign any number of roles to any of the following permission types. However please read carefully the implications of such actions."),a.push("<% }%>"),a.push("
"),a.push('
'),a.push("

Library permissions

"),a.push("

Roles that can access the library

"),a.push('
'),a.push('
User with any of these roles can access this library. If there are no access roles set on the library it is considered unrestricted.
'),a.push("

Roles that can manage permissions on this library

"),a.push('
'),a.push('
User with any of these roles can manage permissions on this library (includes giving access).
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Roles that can add items to this library

"),a.push('
'),a.push('
User with any of these roles can add items to this library (folders and datasets).
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Roles that can modify this library

"),a.push('
'),a.push('
User with any of these roles can modify this library (name, synopsis, etc.).
'),a.push(''),a.push("
"),a.push("
"),_.template(a.join(""))}});return{LibraryView:d}}); +define(["libs/toastr","mvc/library/library-model","mvc/ui/ui-select"],function(a,b,c){var d=Backbone.View.extend({el:"#center",model:null,options:{},events:{"click .toolbtn_save_permissions":"savePermissions"},initialize:function(a){this.options=_.extend(this.options,a),this.options.id&&this.fetchLibrary()},fetchLibrary:function(c){this.options=_.extend(this.options,c),this.model=new b.Library({id:this.options.id});var d=this;this.model.fetch({success:function(){d.options.show_permissions?d.showPermissions():d.render()},error:function(b,c){"undefined"!=typeof c.responseJSON?a.error(c.responseJSON.err_msg+" Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}}):a.error("An error ocurred. Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}})}})},render:function(a){$(".tooltip").remove(),this.options=_.extend(this.options,a);var b=this.templateLibrary();this.$el.html(b({item:this.model})),$("#center [data-toggle]").tooltip()},shareDataset:function(){a.info("Feature coming soon.")},goBack:function(){Galaxy.libraries.library_router.back()},showPermissions:function(b){this.options=_.extend(this.options,b),$(".tooltip").remove(),void 0!==this.options.fetched_permissions&&this.model.set(0===this.options.fetched_permissions.access_library_role_list.length?{is_unrestricted:!0}:{is_unrestricted:!1});var c=!1;Galaxy.user&&(c=Galaxy.user.isAdmin());var d=this.templateLibraryPermissions();this.$el.html(d({library:this.model,is_admin:c}));var e=this;void 0===this.options.fetched_permissions?$.get(Galaxy.root+"api/libraries/"+e.id+"/permissions?scope=current").done(function(a){e.prepareSelectBoxes({fetched_permissions:a})}).fail(function(){a.error("An error occurred while attempting to fetch library permissions.")}):this.prepareSelectBoxes({}),$("#center [data-toggle]").tooltip(),$("#center").css("overflow","auto")},_serializeRoles:function(a){for(var b=[],c=0;c=0;b--)ids_list.push(a[b].id);return ids_list},savePermissions:function(){var b=this,c=this._extractIds(this.accessSelectObject.$el.select2("data")),d=this._extractIds(this.addSelectObject.$el.select2("data")),e=this._extractIds(this.manageSelectObject.$el.select2("data")),f=this._extractIds(this.modifySelectObject.$el.select2("data"));$.post(Galaxy.root+"api/libraries/"+b.id+"/permissions?action=set_permissions",{"access_ids[]":c,"add_ids[]":d,"manage_ids[]":e,"modify_ids[]":f}).done(function(c){b.showPermissions({fetched_permissions:c}),a.success("Permissions saved.")}).fail(function(){a.error("An error occurred while attempting to set library permissions.")})},templateLibrary:function(){return _.template(['
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','",'/datasets/<%- item.id %>/permissions">','","",'","
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","This dataset is unrestricted so everybody can access it. Just share the URL of this page. ",' ","

",'
','',"",'","","",'<% if (item.get("file_ext")) { %>',"",'',"","","<% } %>","
">',"Name","",'<%= _.escape(item.get("name")) %>',"
Data type",'<%= _.escape(item.get("file_ext")) %>',"
","
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"].join(""))},templateLibraryPermissions:function(){return _.template(['
','","

",'Library: <%= _.escape(library.get("name")) %>',"

",'
',"<% if (is_admin) { %>","You are logged in as an administrator therefore you can manage any library on this Galaxy instance. Please make sure you understand the consequences.","<% } else { %>","You can assign any number of roles to any of the following permission types. However please read carefully the implications of such actions.","<% }%>","
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',"

Library permissions

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Roles that can access the library

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',"User with any of these roles can access this library. If there are no access roles set on the library it is considered unrestricted.","
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Roles that can manage permissions on this library

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","

Roles that can add items to this library

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','
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","

Roles that can modify this library

",'
','
',"User with any of these roles can modify this library (name, synopsis, etc.).","
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"].join(""))}});return{LibraryView:d}}); //# sourceMappingURL=../../../maps/mvc/library/library-library-view.js.map \ No newline at end of file diff --git a/static/scripts/mvc/library/library-librarylist-view.js b/static/scripts/mvc/library/library-librarylist-view.js index c1ec21c9f91..aebdd93cf7f 100644 --- a/static/scripts/mvc/library/library-librarylist-view.js +++ b/static/scripts/mvc/library/library-librarylist-view.js @@ -1,2 +1,2 @@ -define(["layout/masthead","mvc/base-mvc","utils/utils","libs/toastr","mvc/library/library-model","mvc/library/library-libraryrow-view","libs/underscore"],function(a,b,c,d,e,f,g){var h=Backbone.View.extend({el:"#libraries_element",events:{"click .sort-libraries-link":"sort_clicked"},defaults:{page_count:null,show_page:null},initialize:function(a){this.options=g.defaults(this.options||{},a,this.defaults);var b=this;this.modal=null,this.collection=new e.Libraries,this.collection.fetch({success:function(){b.render()},error:function(a,b){d.error("undefined"!=typeof b.responseJSON?b.responseJSON.err_msg:"An error ocurred.")}})},render:function(a){this.options=g.extend(this.options,a),this.setElement("#libraries_element");var b=this.templateLibraryList(),c=null,d=null;if($(".tooltip").hide(),"undefined"!=typeof a&&(d="undefined"!=typeof a.models?a.models:null),null!==this.collection&&null===d)this.sortLibraries(),c=Galaxy.libraries.preferences.get("with_deleted")?this.collection.models:this.collection.where({deleted:!1});else if(null!==d)if(Galaxy.libraries.preferences.get("with_deleted"))c=d;else{var e=function(a){return a.get("deleted")===!1};c=g.filter(d,e)}else c=[];(null===this.options.show_page||this.options.show_page<1)&&(this.options.show_page=1),this.options.total_libraries_count=c.length;var f=Galaxy.libraries.preferences.get("library_page_size")*(this.options.show_page-1);this.options.page_count=Math.ceil(this.options.total_libraries_count/Galaxy.libraries.preferences.get("library_page_size")),this.options.total_libraries_count>0&&fthis.options.total_libraries_count+Galaxy.libraries.preferences.get("library_page_size")&&(c=[]),this.$el.html(b({length:1,order:Galaxy.libraries.preferences.get("sort_order"),search_term:Galaxy.libraries.libraryToolbarView.options.search_term})),Galaxy.libraries.libraryToolbarView.renderPaginator(this.options),this.renderRows(c)):(this.$el.html(b({length:0,order:Galaxy.libraries.preferences.get("sort_order"),search_term:Galaxy.libraries.libraryToolbarView.options.search_term})),Galaxy.libraries.libraryToolbarView.renderPaginator(this.options)),$("#center [data-toggle]").tooltip(),$("#center").css("overflow","auto")},renderRows:function(a){for(var b=0;b'),tmpl_array.push("<% if(length === 0) { %>"),tmpl_array.push("<% if(search_term.length > 0) { %>"),tmpl_array.push("
There are no libraries matching your search. Try different keyword.
"),tmpl_array.push("<% } else{ %>"),tmpl_array.push('
There are no libraries visible to you here. If you expected some to show up please consult the library security wikipage or visit the Galaxy support site.
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name descriptionsynopsis
"),tmpl_array.push("<% }%>"),tmpl_array.push("
"),g.template(tmpl_array.join(""))}});return{LibraryListView:h}}); +define(["layout/masthead","mvc/base-mvc","utils/utils","libs/toastr","mvc/library/library-model","mvc/library/library-libraryrow-view","libs/underscore"],function(a,b,c,d,e,f,g){var h=Backbone.View.extend({el:"#libraries_element",events:{"click .sort-libraries-link":"sort_clicked"},defaults:{page_count:null,show_page:null,all_fetched:!1},initialize:function(a){this.options=g.defaults(this.options||{},a,this.defaults);var b=this;this.modal=null,this.collection=new e.Libraries,this.collection.url=this.collection.urlRoot+"?deleted=false",this.collection.fetch({success:function(){b.render()},error:function(a,b){d.error("undefined"!=typeof b.responseJSON?b.responseJSON.err_msg:"An error ocurred.")}})},render:function(a){this.options=g.extend(this.options,a),this.setElement("#libraries_element");var b=this.templateLibraryList(),c=null,d=null;if($(".tooltip").hide(),"undefined"!=typeof a&&(d="undefined"!=typeof a.models?a.models:null),null!==this.collection&&null===d)this.sortLibraries(),c=Galaxy.libraries.preferences.get("with_deleted")?this.collection.models:this.collection.where({deleted:!1});else if(null!==d)if(Galaxy.libraries.preferences.get("with_deleted"))c=d;else{var e=function(a){return a.get("deleted")===!1};c=g.filter(d,e)}else c=[];(null===this.options.show_page||this.options.show_page<1)&&(this.options.show_page=1),this.options.total_libraries_count=c.length;var f=Galaxy.libraries.preferences.get("library_page_size")*(this.options.show_page-1);this.options.page_count=Math.ceil(this.options.total_libraries_count/Galaxy.libraries.preferences.get("library_page_size")),this.options.total_libraries_count>0&&fthis.options.total_libraries_count+Galaxy.libraries.preferences.get("library_page_size")&&(c=[]),this.$el.html(b({length:1,order:Galaxy.libraries.preferences.get("sort_order"),search_term:Galaxy.libraries.libraryToolbarView.options.search_term})),Galaxy.libraries.libraryToolbarView.renderPaginator(this.options),this.renderRows(c)):(this.$el.html(b({length:0,order:Galaxy.libraries.preferences.get("sort_order"),search_term:Galaxy.libraries.libraryToolbarView.options.search_term})),Galaxy.libraries.libraryToolbarView.renderPaginator(this.options)),$("#center [data-toggle]").tooltip(),$("#center").css("overflow","auto")},fetchDeleted:function(){if(this.options.all_fetched)this.render();else{var a=this;this.collection.url=this.collection.urlRoot+"?deleted=true",this.collection.fetch({remove:!1,success:function(){a.options.all_fetched=!0,a.render()},error:function(a,b){d.error("undefined"!=typeof b.responseJSON?b.responseJSON.err_msg:"An error ocurred.")}})}},renderRows:function(a){for(var b=0;b',"<% if(length === 0) { %>","<% if(search_term.length > 0) { %>","
","There are no libraries matching your search. Try different keyword.","
","<% } else{ %>","
","There are no libraries visible to you here. If you expected some to show up please consult the",' library security wikipage',' or visit the Galaxy support site.',"
","<% }%>","<% } else{ %>",'',"",'",'',' ','',"",'',"","
','',"name","",'',"descriptionsynopsis
","<% }%>","
"].join(""))}});return{LibraryListView:h}}); //# sourceMappingURL=../../../maps/mvc/library/library-librarylist-view.js.map \ No newline at end of file diff --git a/static/scripts/mvc/library/library-librarytoolbar-view.js b/static/scripts/mvc/library/library-librarytoolbar-view.js index f44dd39f19f..64920d507c0 100644 --- a/static/scripts/mvc/library/library-librarytoolbar-view.js +++ b/static/scripts/mvc/library/library-librarytoolbar-view.js @@ -1,2 +1,2 @@ -define(["libs/toastr","mvc/library/library-model"],function(a,b){var c=Backbone.View.extend({el:"#center",defaults:{search_term:""},events:{"click #create_new_library_btn":"createLibraryFromModal","click #include_deleted_chk":"includeDeletedChecked","click #lib_page_size_prompt":"showPageSizePrompt","keyup .library-search-input":"searchLibraries"},initialize:function(a){this.options=_.defaults(this.options||{},a,this.defaults),this.render()},render:function(){var a=this.templateToolBar(),b=!1,c=!0;Galaxy.user&&(b=Galaxy.user.isAdmin(),c=Galaxy.user.isAnonymous()),this.$el.html(a({admin_user:b,anon_user:c})),b&&(this.$el.find("#include_deleted_chk")[0].checked=Galaxy.libraries.preferences.get("with_deleted"))},renderPaginator:function(a){this.options=_.extend(this.options,a);var b=this.templatePaginator();this.$el.find("#library_paginator").html(b({show_page:parseInt(this.options.show_page),page_count:parseInt(this.options.page_count),total_libraries_count:this.options.total_libraries_count,libraries_shown:this.options.libraries_shown}))},createLibraryFromModal:function(a){a.preventDefault(),a.stopPropagation();var b=this;this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:"Create New Library",body:this.templateNewLibraryInModal(),buttons:{Create:function(){b.createNewLibrary()},Close:function(){b.modal.hide()}}})},createNewLibrary:function(){var c=this.serializeNewLibrary();if(this.validateNewLibrary(c)){var d=new b.Library,e=this;d.save(c,{success:function(b){Galaxy.libraries.libraryListView.collection.add(b),e.modal.hide(),e.clearLibraryModal(),Galaxy.libraries.libraryListView.render(),a.success("Library created.")},error:function(b,c){a.error("undefined"!=typeof c.responseJSON?c.responseJSON.err_msg:"An error occured.")}})}else a.error("Library's name is missing.");return!1},showPageSizePrompt:function(){var a=prompt("How many libraries per page do you want to see?",Galaxy.libraries.preferences.get("library_page_size"));null!=a&&a==parseInt(a)&&(Galaxy.libraries.preferences.set({library_page_size:parseInt(a)}),Galaxy.libraries.libraryListView.render({show_page:1}))},clearLibraryModal:function(){$("input[name='Name']").val(""),$("input[name='Description']").val(""),$("input[name='Synopsis']").val("")},serializeNewLibrary:function(){return{name:$("input[name='Name']").val(),description:$("input[name='Description']").val(),synopsis:$("input[name='Synopsis']").val()}},validateNewLibrary:function(a){return""!==a.name},includeDeletedChecked:function(a){a.target.checked?(Galaxy.libraries.preferences.set({with_deleted:!0}),Galaxy.libraries.libraryListView.render()):(Galaxy.libraries.preferences.set({with_deleted:!1}),Galaxy.libraries.libraryListView.render())},searchLibraries:function(){var a=$(".library-search-input").val();this.options.search_term=a,Galaxy.libraries.libraryListView.searchLibraries(a)},templateToolBar:function(){return _.template(['
','
','
','
','DATA LIBRARIES','',"",'
','',"
","<% if(admin_user === true) { %>",'
',"","
",'','',"","<% } %>",'','','',"","","
","
","
",'
',"
","
"].join(""))},templatePaginator:function(){return _.template(['",'',' showing <%- libraries_shown %> of <%- total_libraries_count %> libraries',""].join(""))},templateNewLibraryInModal:function(){return _.template(['
',"
",'','','',"
","
"].join(""))}});return{LibraryToolbarView:c}}); +define(["libs/toastr","mvc/library/library-model"],function(a,b){var c=Backbone.View.extend({el:"#center",defaults:{search_term:""},events:{"click #create_new_library_btn":"createLibraryFromModal","click #include_deleted_chk":"includeDeletedChecked","click #lib_page_size_prompt":"showPageSizePrompt","keyup .library-search-input":"searchLibraries"},initialize:function(a){this.options=_.defaults(this.options||{},a,this.defaults),this.render()},render:function(){var a=this.templateToolBar(),b=!1,c=!0;Galaxy.user&&(b=Galaxy.user.isAdmin(),c=Galaxy.user.isAnonymous()),this.$el.html(a({admin_user:b,anon_user:c})),b&&(this.$el.find("#include_deleted_chk")[0].checked=Galaxy.libraries.preferences.get("with_deleted"))},renderPaginator:function(a){this.options=_.extend(this.options,a);var b=this.templatePaginator();this.$el.find("#library_paginator").html(b({show_page:parseInt(this.options.show_page),page_count:parseInt(this.options.page_count),total_libraries_count:this.options.total_libraries_count,libraries_shown:this.options.libraries_shown}))},createLibraryFromModal:function(a){a.preventDefault(),a.stopPropagation();var b=this;this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:"Create New Library",body:this.templateNewLibraryInModal(),buttons:{Create:function(){b.createNewLibrary()},Close:function(){b.modal.hide()}}})},createNewLibrary:function(){var c=this.serializeNewLibrary();if(this.validateNewLibrary(c)){var d=new b.Library,e=this;d.save(c,{success:function(b){Galaxy.libraries.libraryListView.collection.add(b),e.modal.hide(),e.clearLibraryModal(),Galaxy.libraries.libraryListView.render(),a.success("Library created.")},error:function(b,c){a.error("undefined"!=typeof c.responseJSON?c.responseJSON.err_msg:"An error occured.")}})}else a.error("Library's name is missing.");return!1},showPageSizePrompt:function(){var a=prompt("How many libraries per page do you want to see?",Galaxy.libraries.preferences.get("library_page_size"));null!=a&&a==parseInt(a)&&(Galaxy.libraries.preferences.set({library_page_size:parseInt(a)}),Galaxy.libraries.libraryListView.render({show_page:1}))},clearLibraryModal:function(){$("input[name='Name']").val(""),$("input[name='Description']").val(""),$("input[name='Synopsis']").val("")},serializeNewLibrary:function(){return{name:$("input[name='Name']").val(),description:$("input[name='Description']").val(),synopsis:$("input[name='Synopsis']").val()}},validateNewLibrary:function(a){return""!==a.name},includeDeletedChecked:function(a){a.target.checked?(Galaxy.libraries.preferences.set({with_deleted:!0}),Galaxy.libraries.libraryListView.fetchDeleted()):(Galaxy.libraries.preferences.set({with_deleted:!1}),Galaxy.libraries.libraryListView.render())},searchLibraries:function(){var a=$(".library-search-input").val();this.options.search_term=a,Galaxy.libraries.libraryListView.searchLibraries(a)},templateToolBar:function(){return _.template(['
','
','
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