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Fix for interval2maf.py when metadata missing strand column value.

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This commit is contained in:
Greg Von Kuster
2008-08-12 10:04:28 -04:00
parent 02f2ff3c85
commit 50107f946a
1 changed files with 4 additions and 5 deletions
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tools/maf/interval2maf.py
+4 -5
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@@ -54,23 +54,22 @@ def __main__():
if options.chromCol: chromCol = int( options.chromCol ) - 1
else:
print >>sys.stderr, "Chromosome column has not been specified."
print >>sys.stderr, "Chromosome column not set, click the pencil icon in the history item to set the metadata attributes."
sys.exit()
if options.startCol: startCol = int( options.startCol ) - 1
else:
print >>sys.stderr, "Start column has not been specified."
print >>sys.stderr, "Start column not set, click the pencil icon in the history item to set the metadata attributes."
sys.exit()
if options.endCol: endCol = int( options.endCol ) - 1
else:
print >>sys.stderr, "End column has not been specified."
print >>sys.stderr, "End column not set, click the pencil icon in the history item to set the metadata attributes."
sys.exit()
if options.strandCol: strandCol = int( options.strandCol ) - 1
else:
print >>sys.stderr, "Strand column has not been specified."
sys.exit()
strandCol = -1
if options.interval_file: interval_file = options.interval_file
else: