diff --git a/tools/maf/interval2maf.py b/tools/maf/interval2maf.py index eaa7b15f0e2..498f51c8f23 100755 --- a/tools/maf/interval2maf.py +++ b/tools/maf/interval2maf.py @@ -54,23 +54,22 @@ def __main__(): if options.chromCol: chromCol = int( options.chromCol ) - 1 else: - print >>sys.stderr, "Chromosome column has not been specified." + print >>sys.stderr, "Chromosome column not set, click the pencil icon in the history item to set the metadata attributes." sys.exit() if options.startCol: startCol = int( options.startCol ) - 1 else: - print >>sys.stderr, "Start column has not been specified." + print >>sys.stderr, "Start column not set, click the pencil icon in the history item to set the metadata attributes." sys.exit() if options.endCol: endCol = int( options.endCol ) - 1 else: - print >>sys.stderr, "End column has not been specified." + print >>sys.stderr, "End column not set, click the pencil icon in the history item to set the metadata attributes." sys.exit() if options.strandCol: strandCol = int( options.strandCol ) - 1 else: - print >>sys.stderr, "Strand column has not been specified." - sys.exit() + strandCol = -1 if options.interval_file: interval_file = options.interval_file else: