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Merge pull request #13364 from galaxybot/dev_auto_update_dependencies

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Update Python dependencies
This commit is contained in:
Nicola Soranzo
2022-02-12 10:20:06 +00:00
committed by GitHub
parent 9d8c763dd5 7f8545c68d
commit 4bf1667e30
3 changed files with 18 additions and 18 deletions
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lib/galaxy/dependencies/dev-requirements.txt
+11 -11
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@@ -46,7 +46,7 @@ coverage==6.3.1; python_version >= "3.7"
cryptography==36.0.1; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" or python_full_version >= "3.6.0" and python_version < "4" and python_version >= "3.7"
cwltest==2.2.20210901154959; python_version >= "3.6" and python_version < "4"
cwltool==3.1.20211107152837; python_version >= "3.6" and python_version < "4"
darker==1.3.2; python_version >= "3.6"
darker==1.4.0; python_version >= "3.6"
decorator==5.1.1; python_version >= "3.6" and python_version < "4"
defusedxml==0.7.1; python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_full_version >= "3.5.0" and python_version >= "3.6" and python_version < "4"
deprecated==1.2.13; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
@@ -60,7 +60,7 @@ fabric3==1.14.post1
fastapi-utils==0.2.1; python_version >= "3.6" and python_version < "4.0"
fastapi==0.73.0; python_full_version >= "3.6.1"
fluent-logger==0.10.0; python_version >= "3.5"
fs==2.4.14
fs==2.4.15
funcsigs==1.0.2
future==0.18.2; (python_version >= "2.6" and python_full_version < "3.0.0") or (python_full_version >= "3.3.0")
galaxy-sequence-utils==1.1.5
@@ -75,7 +75,7 @@ httpx==0.22.0; python_version >= "3.6"
humanfriendly==10.0; python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.5.0"
idna==3.3
imagesize==1.3.0; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
importlib-metadata==4.10.1; python_version == "3.7" and (python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "3.8" or python_full_version >= "3.6.0" and python_version < "3.8" and python_version >= "3.7") and python_full_version >= "3.6.2" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6")
importlib-metadata==4.11.0; python_version == "3.7" and (python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "3.8" or python_full_version >= "3.6.0" and python_version < "3.8" and python_version >= "3.7") and python_full_version >= "3.6.2" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6")
importlib-resources==5.4.0; python_version >= "3.6"
iniconfig==1.1.1; python_version >= "3.7"
isa-rwval==0.10.10
@@ -93,7 +93,7 @@ markdown-it-reporter==0.0.2
markdown==3.3.6; python_version >= "3.6"
markupsafe==2.0.1; python_version >= "3.6"
mercurial==6.0.2
mirakuru==2.4.1; python_version >= "3.7"
mirakuru==2.4.2; python_version >= "3.7"
mistune==0.8.4; python_version >= "3.7" and python_version < "4"
mrcfile==1.3.0
msgpack==1.0.3; python_version >= "3.7" and python_version < "4"
@@ -112,12 +112,12 @@ parsley==1.3
paste==3.5.0
pastedeploy==2.1.1
pathspec==0.9.0; python_full_version >= "3.6.2" and python_version >= "3.6"
pbr==5.8.0; python_version >= "2.6"
platformdirs==2.4.1; python_version >= "3.7" and python_full_version >= "3.6.2"
pbr==5.8.1; python_version >= "2.6"
platformdirs==2.5.0; python_version >= "3.7" and python_full_version >= "3.6.2"
pluggy==1.0.0; python_version >= "3.7"
port-for==0.6.1; python_version >= "3.7"
prettytable==3.0.0; python_version >= "3.7"
prompt-toolkit==3.0.26; python_full_version >= "3.6.2" and python_version >= "3.7"
prompt-toolkit==3.0.28; python_full_version >= "3.6.2" and python_version >= "3.7"
prov==1.5.1; python_version >= "3.6" and python_version < "4"
psutil==5.9.0; (python_version >= "2.6" and python_full_version < "3.0.0") or (python_full_version >= "3.4.0")
pulsar-galaxy-lib==0.14.13
@@ -140,7 +140,7 @@ pyreadline3==3.4.1; sys_platform == "win32" and python_version >= "3.8" and (pyt
pyreadline==2.1; sys_platform == "win32" and python_version < "3.8" and (python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.5.0")
pyrsistent==0.18.1; python_version >= "3.7"
pysam==0.18.0
pytest-asyncio==0.17.2; python_version >= "3.7"
pytest-asyncio==0.18.1; python_version >= "3.7"
pytest-celery==0.0.0
pytest-cov==3.0.0; python_version >= "3.6"
pytest-html==3.1.1; python_version >= "3.6"
@@ -149,7 +149,7 @@ pytest-metadata==1.11.0; python_version >= "3.6" and python_full_version < "3.0.
pytest-mock==3.7.0; python_version >= "3.7"
pytest-postgresql==4.1.0; python_version >= "3.7"
pytest-shard==0.1.2; python_version >= "3.6"
pytest==7.0.0; python_version >= "3.6"
pytest==7.0.1; python_version >= "3.6"
python-dateutil==2.8.2; python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.3.0"
python-irodsclient==1.1.1
python-jose==3.3.0
@@ -168,7 +168,7 @@ requests-toolbelt==0.9.1; python_version >= "3.6"
requests==2.27.1; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.6.0")
responses==0.18.0; python_version >= "3.7"
rfc3986==1.5.0; python_version >= "3.6"
rich==11.1.0; python_full_version >= "3.6.2" and python_full_version < "4.0.0"
rich==11.2.0; python_full_version >= "3.6.2" and python_full_version < "4.0.0"
routes==2.5.1
rsa==4.8; python_version >= "3.6" and python_version < "4"
ruamel.yaml.clib==0.2.6; platform_python_implementation == "CPython" and python_version < "3.10" and python_version >= "3.6"
@@ -206,7 +206,7 @@ testfixtures==6.18.3
tifffile==2021.11.2; python_version >= "3.7"
tinydb==4.6.1; python_version >= "3.6" and python_version < "4.0"
toml==0.10.2; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.3.0" and python_version >= "3.6"
tomli==2.0.0; python_version >= "3.7" and python_full_version >= "3.6.2"
tomli==2.0.1; python_version >= "3.7" and python_full_version >= "3.6.2"
tornado==6.1; python_version >= "3.5"
tqdm==4.62.3; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.4.0"
trio-websocket==0.9.2; python_version >= "3.7" and python_version < "4.0"
lib/galaxy/dependencies/pinned-lint-requirements.txt
+2 -2
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@@ -18,11 +18,11 @@ types-docutils==0.17.5
types-enum34==1.1.8
types-ipaddress==1.0.8
types-Markdown==3.3.12
types-paramiko==2.8.12
types-paramiko==2.8.13
types-pkg-resources==0.1.3
types-python-dateutil==2.8.9
types-PyYAML==6.0.4
types-requests==2.27.8
types-requests==2.27.9
types-six==1.16.10
types-urllib3==1.26.9
typing_extensions==4.0.1
lib/galaxy/dependencies/pinned-requirements.txt
+5 -5
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@@ -51,7 +51,7 @@ edam-ontology==1.25.2
fabric3==1.14.post1
fastapi-utils==0.2.1; python_version >= "3.6" and python_version < "4.0"
fastapi==0.73.0; python_full_version >= "3.6.1"
fs==2.4.14
fs==2.4.15
funcsigs==1.0.2
future==0.18.2; (python_version >= "2.6" and python_full_version < "3.0.0") or (python_full_version >= "3.3.0")
galaxy-sequence-utils==1.1.5
@@ -63,7 +63,7 @@ h11==0.12.0; python_version >= "3.7"
h5py==3.6.0; python_version >= "3.7"
humanfriendly==10.0; python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.5.0"
idna==3.3; python_full_version >= "3.6.2" and python_version >= "3.7" and python_version < "4"
importlib-metadata==4.10.1; python_version == "3.7" and (python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "3.8" or python_full_version >= "3.6.0" and python_version < "3.8" and python_version >= "3.7")
importlib-metadata==4.11.0; python_version == "3.7" and (python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "3.8" or python_full_version >= "3.6.0" and python_version < "3.8" and python_version >= "3.7")
importlib-resources==5.4.0; python_version >= "3.6"
isa-rwval==0.10.10
isodate==0.6.1; python_version >= "3.7" and python_version < "4"
@@ -91,8 +91,8 @@ paramiko==2.9.2
parsley==1.3
paste==3.5.0
pastedeploy==2.1.1
pbr==5.8.0; python_version >= "2.6"
prompt-toolkit==3.0.26; python_full_version >= "3.6.2" and python_version >= "3.7"
pbr==5.8.1; python_version >= "2.6"
prompt-toolkit==3.0.28; python_full_version >= "3.6.2" and python_version >= "3.7"
prov==1.5.1; python_version >= "3.6" and python_version < "4"
psutil==5.9.0; (python_version >= "2.6" and python_full_version < "3.0.0") or (python_full_version >= "3.4.0")
pulsar-galaxy-lib==0.14.13
@@ -127,7 +127,7 @@ repoze.lru==0.7
requests-oauthlib==1.3.1; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.4.0"
requests-toolbelt==0.9.1; python_version >= "3.6"
requests==2.27.1; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.6.0")
rich==11.1.0; python_full_version >= "3.6.2" and python_full_version < "4.0.0"
rich==11.2.0; python_full_version >= "3.6.2" and python_full_version < "4.0.0"
routes==2.5.1
rsa==4.8; python_version >= "3.6" and python_version < "4"
ruamel.yaml.clib==0.2.6; platform_python_implementation == "CPython" and python_version < "3.10" and python_version >= "3.6"