From 7f8545c68d536ba3ace428d6d71f2afbc28e0930 Mon Sep 17 00:00:00 2001 From: galaxybot Date: Sat, 12 Feb 2022 03:11:19 +0000 Subject: [PATCH] Update Python dependencies --- lib/galaxy/dependencies/dev-requirements.txt | 22 +++++++++---------- .../dependencies/pinned-lint-requirements.txt | 4 ++-- .../dependencies/pinned-requirements.txt | 10 ++++----- 3 files changed, 18 insertions(+), 18 deletions(-) diff --git a/lib/galaxy/dependencies/dev-requirements.txt b/lib/galaxy/dependencies/dev-requirements.txt index ada206c0cba..8eeb2b0c01c 100644 --- a/lib/galaxy/dependencies/dev-requirements.txt +++ b/lib/galaxy/dependencies/dev-requirements.txt @@ -46,7 +46,7 @@ coverage==6.3.1; python_version >= "3.7" cryptography==36.0.1; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" or python_full_version >= "3.6.0" and python_version < "4" and python_version >= "3.7" cwltest==2.2.20210901154959; python_version >= "3.6" and python_version < "4" cwltool==3.1.20211107152837; python_version >= "3.6" and python_version < "4" -darker==1.3.2; python_version >= "3.6" +darker==1.4.0; python_version >= "3.6" decorator==5.1.1; python_version >= "3.6" and python_version < "4" defusedxml==0.7.1; python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_full_version >= "3.5.0" and python_version >= "3.6" and python_version < "4" deprecated==1.2.13; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6" @@ -60,7 +60,7 @@ fabric3==1.14.post1 fastapi-utils==0.2.1; python_version >= "3.6" and python_version < "4.0" fastapi==0.73.0; python_full_version >= "3.6.1" fluent-logger==0.10.0; python_version >= "3.5" -fs==2.4.14 +fs==2.4.15 funcsigs==1.0.2 future==0.18.2; (python_version >= "2.6" and python_full_version < "3.0.0") or (python_full_version >= "3.3.0") galaxy-sequence-utils==1.1.5 @@ -75,7 +75,7 @@ httpx==0.22.0; python_version >= "3.6" humanfriendly==10.0; python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.5.0" idna==3.3 imagesize==1.3.0; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6" -importlib-metadata==4.10.1; python_version == "3.7" and (python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "3.8" or python_full_version >= "3.6.0" and python_version < "3.8" and python_version >= "3.7") and python_full_version >= "3.6.2" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6") +importlib-metadata==4.11.0; python_version == "3.7" and (python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "3.8" or python_full_version >= "3.6.0" and python_version < "3.8" and python_version >= "3.7") and python_full_version >= "3.6.2" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6") importlib-resources==5.4.0; python_version >= "3.6" iniconfig==1.1.1; python_version >= "3.7" isa-rwval==0.10.10 @@ -93,7 +93,7 @@ markdown-it-reporter==0.0.2 markdown==3.3.6; python_version >= "3.6" markupsafe==2.0.1; python_version >= "3.6" mercurial==6.0.2 -mirakuru==2.4.1; python_version >= "3.7" +mirakuru==2.4.2; python_version >= "3.7" mistune==0.8.4; python_version >= "3.7" and python_version < "4" mrcfile==1.3.0 msgpack==1.0.3; python_version >= "3.7" and python_version < "4" @@ -112,12 +112,12 @@ parsley==1.3 paste==3.5.0 pastedeploy==2.1.1 pathspec==0.9.0; python_full_version >= "3.6.2" and python_version >= "3.6" -pbr==5.8.0; python_version >= "2.6" -platformdirs==2.4.1; python_version >= "3.7" and python_full_version >= "3.6.2" +pbr==5.8.1; python_version >= "2.6" +platformdirs==2.5.0; python_version >= "3.7" and python_full_version >= "3.6.2" pluggy==1.0.0; python_version >= "3.7" port-for==0.6.1; python_version >= "3.7" prettytable==3.0.0; python_version >= "3.7" -prompt-toolkit==3.0.26; python_full_version >= "3.6.2" and python_version >= "3.7" +prompt-toolkit==3.0.28; python_full_version >= "3.6.2" and python_version >= "3.7" prov==1.5.1; python_version >= "3.6" and python_version < "4" psutil==5.9.0; (python_version >= "2.6" and python_full_version < "3.0.0") or (python_full_version >= "3.4.0") pulsar-galaxy-lib==0.14.13 @@ -140,7 +140,7 @@ pyreadline3==3.4.1; sys_platform == "win32" and python_version >= "3.8" and (pyt pyreadline==2.1; sys_platform == "win32" and python_version < "3.8" and (python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.5.0") pyrsistent==0.18.1; python_version >= "3.7" pysam==0.18.0 -pytest-asyncio==0.17.2; python_version >= "3.7" +pytest-asyncio==0.18.1; python_version >= "3.7" pytest-celery==0.0.0 pytest-cov==3.0.0; python_version >= "3.6" pytest-html==3.1.1; python_version >= "3.6" @@ -149,7 +149,7 @@ pytest-metadata==1.11.0; python_version >= "3.6" and python_full_version < "3.0. pytest-mock==3.7.0; python_version >= "3.7" pytest-postgresql==4.1.0; python_version >= "3.7" pytest-shard==0.1.2; python_version >= "3.6" -pytest==7.0.0; python_version >= "3.6" +pytest==7.0.1; python_version >= "3.6" python-dateutil==2.8.2; python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.3.0" python-irodsclient==1.1.1 python-jose==3.3.0 @@ -168,7 +168,7 @@ requests-toolbelt==0.9.1; python_version >= "3.6" requests==2.27.1; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.6.0") responses==0.18.0; python_version >= "3.7" rfc3986==1.5.0; python_version >= "3.6" -rich==11.1.0; python_full_version >= "3.6.2" and python_full_version < "4.0.0" +rich==11.2.0; python_full_version >= "3.6.2" and python_full_version < "4.0.0" routes==2.5.1 rsa==4.8; python_version >= "3.6" and python_version < "4" ruamel.yaml.clib==0.2.6; platform_python_implementation == "CPython" and python_version < "3.10" and python_version >= "3.6" @@ -206,7 +206,7 @@ testfixtures==6.18.3 tifffile==2021.11.2; python_version >= "3.7" tinydb==4.6.1; python_version >= "3.6" and python_version < "4.0" toml==0.10.2; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.3.0" and python_version >= "3.6" -tomli==2.0.0; python_version >= "3.7" and python_full_version >= "3.6.2" +tomli==2.0.1; python_version >= "3.7" and python_full_version >= "3.6.2" tornado==6.1; python_version >= "3.5" tqdm==4.62.3; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" trio-websocket==0.9.2; python_version >= "3.7" and python_version < "4.0" diff --git a/lib/galaxy/dependencies/pinned-lint-requirements.txt b/lib/galaxy/dependencies/pinned-lint-requirements.txt index 032f18dc659..f3d131ad693 100644 --- a/lib/galaxy/dependencies/pinned-lint-requirements.txt +++ b/lib/galaxy/dependencies/pinned-lint-requirements.txt @@ -18,11 +18,11 @@ types-docutils==0.17.5 types-enum34==1.1.8 types-ipaddress==1.0.8 types-Markdown==3.3.12 -types-paramiko==2.8.12 +types-paramiko==2.8.13 types-pkg-resources==0.1.3 types-python-dateutil==2.8.9 types-PyYAML==6.0.4 -types-requests==2.27.8 +types-requests==2.27.9 types-six==1.16.10 types-urllib3==1.26.9 typing_extensions==4.0.1 diff --git a/lib/galaxy/dependencies/pinned-requirements.txt b/lib/galaxy/dependencies/pinned-requirements.txt index 6c1dad3eee2..ea822e3f189 100644 --- a/lib/galaxy/dependencies/pinned-requirements.txt +++ b/lib/galaxy/dependencies/pinned-requirements.txt @@ -51,7 +51,7 @@ edam-ontology==1.25.2 fabric3==1.14.post1 fastapi-utils==0.2.1; python_version >= "3.6" and python_version < "4.0" fastapi==0.73.0; python_full_version >= "3.6.1" -fs==2.4.14 +fs==2.4.15 funcsigs==1.0.2 future==0.18.2; (python_version >= "2.6" and python_full_version < "3.0.0") or (python_full_version >= "3.3.0") galaxy-sequence-utils==1.1.5 @@ -63,7 +63,7 @@ h11==0.12.0; python_version >= "3.7" h5py==3.6.0; python_version >= "3.7" humanfriendly==10.0; python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.5.0" idna==3.3; python_full_version >= "3.6.2" and python_version >= "3.7" and python_version < "4" -importlib-metadata==4.10.1; python_version == "3.7" and (python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "3.8" or python_full_version >= "3.6.0" and python_version < "3.8" and python_version >= "3.7") +importlib-metadata==4.11.0; python_version == "3.7" and (python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "3.8" or python_full_version >= "3.6.0" and python_version < "3.8" and python_version >= "3.7") importlib-resources==5.4.0; python_version >= "3.6" isa-rwval==0.10.10 isodate==0.6.1; python_version >= "3.7" and python_version < "4" @@ -91,8 +91,8 @@ paramiko==2.9.2 parsley==1.3 paste==3.5.0 pastedeploy==2.1.1 -pbr==5.8.0; python_version >= "2.6" -prompt-toolkit==3.0.26; python_full_version >= "3.6.2" and python_version >= "3.7" +pbr==5.8.1; python_version >= "2.6" +prompt-toolkit==3.0.28; python_full_version >= "3.6.2" and python_version >= "3.7" prov==1.5.1; python_version >= "3.6" and python_version < "4" psutil==5.9.0; (python_version >= "2.6" and python_full_version < "3.0.0") or (python_full_version >= "3.4.0") pulsar-galaxy-lib==0.14.13 @@ -127,7 +127,7 @@ repoze.lru==0.7 requests-oauthlib==1.3.1; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" requests-toolbelt==0.9.1; python_version >= "3.6" requests==2.27.1; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.6.0") -rich==11.1.0; python_full_version >= "3.6.2" and python_full_version < "4.0.0" +rich==11.2.0; python_full_version >= "3.6.2" and python_full_version < "4.0.0" routes==2.5.1 rsa==4.8; python_version >= "3.6" and python_version < "4" ruamel.yaml.clib==0.2.6; platform_python_implementation == "CPython" and python_version < "3.10" and python_version >= "3.6"