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2 more emboss wrapper bug fixes.

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This commit is contained in:
Greg Von Kuster
2008-04-04 20:27:26 +00:00
parent fcebe910fe
commit 3e56eaf200
2 changed files with 3 additions and 3 deletions
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tools/emboss_5/emboss_digest.xml
+1 -1
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@@ -1,6 +1,6 @@
<tool id="EMBOSS: digest23" name="digest" version="5.0.0">
<description>Protein proteolytic enzyme or reagent cleavage digest</description>
<command>digest -sequence $input1 -outfile $out_file1 -menu $menu -unfavoured $unfavoured -overlap $overlap -allpartials $allpartials -rformat2 $out_format1 -auto</command>
<command>digest -seqall $input1 -outfile $out_file1 -menu $menu -unfavoured $unfavoured -overlap $overlap -allpartials $allpartials -rformat2 $out_format1 -auto</command>
<inputs>
<param format="data" name="input1" type="data">
<label>Sequence</label>
tools/emboss_5/emboss_fuzzpro.xml
+2 -2
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@@ -1,11 +1,11 @@
<tool id="EMBOSS: fuzzpro38" name="fuzzpro" version="5.0.0">
<description>Protein pattern search</description>
<command>fuzzpro -sequence $input1 -outfile $out_file1 -pattern "$pattern" -mismatch $mismatch -rformat2 $out_format1 -auto</command>
<command>fuzzpro -sequence $input1 -outfile $out_file1 -pattern "$pattern" -pmismatch $mismatch -rformat2 $out_format1 -auto</command>
<inputs>
<param format="data" name="input1" type="data">
<label>Sequences</label>
</param>
<param name="pattern" size="5" type="text" value="">
<param name="pattern" size="30" type="text" value="">
<label>Search pattern</label>
</param>
<param name="mismatch" size="5" type="text" value="0">