From 3e56eaf2001d7291a5db6398d7a1c4c25722142b Mon Sep 17 00:00:00 2001 From: Greg Von Kuster Date: Fri, 4 Apr 2008 20:27:26 +0000 Subject: [PATCH] 2 more emboss wrapper bug fixes. --- tools/emboss_5/emboss_digest.xml | 2 +- tools/emboss_5/emboss_fuzzpro.xml | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/tools/emboss_5/emboss_digest.xml b/tools/emboss_5/emboss_digest.xml index 09d009c5c8e..0630a37bff4 100644 --- a/tools/emboss_5/emboss_digest.xml +++ b/tools/emboss_5/emboss_digest.xml @@ -1,6 +1,6 @@ Protein proteolytic enzyme or reagent cleavage digest - digest -sequence $input1 -outfile $out_file1 -menu $menu -unfavoured $unfavoured -overlap $overlap -allpartials $allpartials -rformat2 $out_format1 -auto + digest -seqall $input1 -outfile $out_file1 -menu $menu -unfavoured $unfavoured -overlap $overlap -allpartials $allpartials -rformat2 $out_format1 -auto diff --git a/tools/emboss_5/emboss_fuzzpro.xml b/tools/emboss_5/emboss_fuzzpro.xml index 04d68c12b6a..f893fad8302 100644 --- a/tools/emboss_5/emboss_fuzzpro.xml +++ b/tools/emboss_5/emboss_fuzzpro.xml @@ -1,11 +1,11 @@ Protein pattern search - fuzzpro -sequence $input1 -outfile $out_file1 -pattern "$pattern" -mismatch $mismatch -rformat2 $out_format1 -auto + fuzzpro -sequence $input1 -outfile $out_file1 -pattern "$pattern" -pmismatch $mismatch -rformat2 $out_format1 -auto - +