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Add extra column metadata check for minimal biom1 file

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This commit is contained in:
Bérénice Batut
2019-04-29 18:59:25 +01:00
committed by Nicola Soranzo
parent 343e6e4cd3
commit 3dc68dbe92
1 changed files with 4 additions and 3 deletions
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lib/galaxy/datatypes/text.py
+4 -3
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@@ -256,9 +256,10 @@ class Biom1(Json):
if b_name == "columns" and metadata_value:
keep_columns = set()
for column in metadata_value:
for k, v in column['metadata'].items():
if v is not None:
keep_columns.add(k)
if column['metadata'] is not None:
for k, v in column['metadata'].items():
if v is not None:
keep_columns.add(k)
final_list = sorted(list(keep_columns))
dataset.metadata.table_column_metadata_headers = final_list
if b_name in b_transform: