From 3dc68dbe92bfa623ed79195e3824ec5050633079 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?B=C3=A9r=C3=A9nice=20Batut?= Date: Tue, 9 Apr 2019 10:04:41 +0200 Subject: [PATCH] Add extra column metadata check for minimal biom1 file --- lib/galaxy/datatypes/text.py | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/lib/galaxy/datatypes/text.py b/lib/galaxy/datatypes/text.py index c2e71444cf1..5df35efbeb9 100644 --- a/lib/galaxy/datatypes/text.py +++ b/lib/galaxy/datatypes/text.py @@ -256,9 +256,10 @@ class Biom1(Json): if b_name == "columns" and metadata_value: keep_columns = set() for column in metadata_value: - for k, v in column['metadata'].items(): - if v is not None: - keep_columns.add(k) + if column['metadata'] is not None: + for k, v in column['metadata'].items(): + if v is not None: + keep_columns.add(k) final_list = sorted(list(keep_columns)) dataset.metadata.table_column_metadata_headers = final_list if b_name in b_transform: