opensource/galaxy
3
0
Fork 0
mirror of https://github.com/galaxyproject/galaxy.git synced 2026-09-21 13:50:20 +08:00
Code Issues Packages Projects Releases Wiki Activity

Rev slightly the tool version of extract_genomic_dna.xml since output is slightly different.

Browse Source 
Update tool help to reflect new output format.
This commit is contained in:
John Chilton
2013-10-25 00:06:14 -04:00
parent 54a3dba91e
commit 32b07c04f3
1 changed files with 4 additions and 4 deletions
Download Patch File Download Diff File Expand all files Collapse all files
tools/extract/extract_genomic_dna.xml
+4 -4
View File
@@ -1,4 +1,4 @@
<tool id="Extract genomic DNA 1" name="Extract Genomic DNA" version="2.2.2">
<tool id="Extract genomic DNA 1" name="Extract Genomic DNA" version="2.2.3">
<description>using coordinates from assembled/unassembled genomes</description>
<command interpreter="python">
extract_genomic_dna.py $input $out_file1 -o $out_format -d $dbkey
@@ -166,14 +166,14 @@ If the input dataset is::
Extracting sequences with **FASTA** output data type returns::
&gt;hg17_chr7_127475281_127475310_+
&gt;hg17_chr7_127475281_127475310_+ NM_000230
GTAGGAATCGCAGCGCCAGCGGTTGCAAG
&gt;hg17_chr7_127485994_127486166_+
&gt;hg17_chr7_127485994_127486166_+ NM_000230
GCCCAAGAAGCCCATCCTGGGAAGGAAAATGCATTGGGGAACCCTGTGCG
GATTCTTGTGGCTTTGGCCCTATCTTTTCTATGTCCAAGCTGTGCCCATC
CAAAAAGTCCAAGATGACACCAAAACCCTCATCAAGACAATTGTCACCAG
GATCAATGACATTTCACACACG
&gt;hg17_chr7_127486011_127486166_+
&gt;hg17_chr7_127486011_127486166_+ D49487
TGGGAAGGAAAATGCATTGGGGAACCCTGTGCGGATTCTTGTGGCTTTGG
CCCTATCTTTTCTATGTCCAAGCTGTGCCCATCCAAAAAGTCCAAGATGA
CACCAAAACCCTCATCAAGACAATTGTCACCAGGATCAATGACATTTCAC