From 32b07c04f33ae66f2fdc025170dcfe53e8ab5de7 Mon Sep 17 00:00:00 2001 From: John Chilton Date: Fri, 25 Oct 2013 00:06:14 -0400 Subject: [PATCH] Rev slightly the tool version of extract_genomic_dna.xml since output is slightly different. Update tool help to reflect new output format. --- tools/extract/extract_genomic_dna.xml | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/tools/extract/extract_genomic_dna.xml b/tools/extract/extract_genomic_dna.xml index 5db335b2922..c5ead31f9b7 100644 --- a/tools/extract/extract_genomic_dna.xml +++ b/tools/extract/extract_genomic_dna.xml @@ -1,4 +1,4 @@ - + using coordinates from assembled/unassembled genomes extract_genomic_dna.py $input $out_file1 -o $out_format -d $dbkey @@ -166,14 +166,14 @@ If the input dataset is:: Extracting sequences with **FASTA** output data type returns:: - >hg17_chr7_127475281_127475310_+ + >hg17_chr7_127475281_127475310_+ NM_000230 GTAGGAATCGCAGCGCCAGCGGTTGCAAG - >hg17_chr7_127485994_127486166_+ + >hg17_chr7_127485994_127486166_+ NM_000230 GCCCAAGAAGCCCATCCTGGGAAGGAAAATGCATTGGGGAACCCTGTGCG GATTCTTGTGGCTTTGGCCCTATCTTTTCTATGTCCAAGCTGTGCCCATC CAAAAAGTCCAAGATGACACCAAAACCCTCATCAAGACAATTGTCACCAG GATCAATGACATTTCACACACG - >hg17_chr7_127486011_127486166_+ + >hg17_chr7_127486011_127486166_+ D49487 TGGGAAGGAAAATGCATTGGGGAACCCTGTGCGGATTCTTGTGGCTTTGG CCCTATCTTTTCTATGTCCAAGCTGTGCCCATCCAAAAAGTCCAAGATGA CACCAAAACCCTCATCAAGACAATTGTCACCAGGATCAATGACATTTCAC