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Condense several 17.09 release notes items.
This commit is contained in:
John Chilton
@@ -112,9 +112,10 @@ Enhancements
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* Implement a "plain" bootstrap theme for the UX
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(thanks to `@erasche <https://github.com/erasche>`__).
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`Pull Request 4470`_
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* Add Selenium tests for the "saved histories" and "published histories"
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* Add Selenium tests for the "saved histories", "published histories", and
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"custom builds"
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(thanks to `@anatskiy <https://github.com/anatskiy>`__).
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`Pull Request 4587`_, `Pull Request 4502`_
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`Pull Request 4587`_, `Pull Request 4502`_, `Pull Request 4641`_,
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* Dozens of Selenium functional test enhancements and fixes
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`Pull Request 3993`_, `Pull Request 4523`_, `Pull Request 4524`_, `Pull Request 4549`_,
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`Pull Request 4588`_, `Pull Request 4589`_, `Pull Request 4647`_,
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@@ -168,15 +169,18 @@ Enhancements
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* Add the ability to control job conf plugin loading from environment
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variables.
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`Pull Request 4154`_
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* Remove saved pages grid mako
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`Pull Request 4157`_
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* Replace various mako templates with client side JavaScript rendering.
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`Pull Request 4157`_, `Pull Request 4167`_, `Pull Request 4169`_,
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`Pull Request 4201`_, `Pull Request 4311`_, `Pull Request 4377`_,
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`Pull Request 4411`_, `Pull Request 4334`_
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* Related to the above mako transition, rework various "grid" rendering code
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to do more on the client side as well.
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`Pull Request 4302`_, `Pull Request 4291`_, `Pull Request 4293`_,
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`Pull Request 4385`_, `Pull Request 4405`_,
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`Pull Request 4449`_, `Pull Request 4263`_, `Pull Request 4341`_,
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`Pull Request 4163`_, `Pull Request 4101`_
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* Set content type to application/json for JSON text types.
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`Pull Request 4160`_
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* Remove histories grid mako
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`Pull Request 4167`_
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* Mako to JavaScript views for Workflow's Run and Import actions
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(thanks to `@bgruening <https://github.com/bgruening>`__).
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`Pull Request 4169`_
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* Improved Mulled Containers
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`Pull Request 4173`_
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* Allow Galaxy to use cached mulled containers for Singularity.
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@@ -189,8 +193,6 @@ Enhancements
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* deals with .xls older file extension
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(thanks to `@FredericBGA <https://github.com/FredericBGA>`__).
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`Pull Request 4200`_
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* Remove makos for published list grids
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`Pull Request 4201`_
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* add dev requirement
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`Pull Request 4008`_
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* Improve search plugin
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@@ -247,19 +249,13 @@ Enhancements
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* Local network access restrictions
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(thanks to `@erasche <https://github.com/erasche>`__).
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`Pull Request 4289`_
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* Grid published histories
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`Pull Request 4291`_
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* Enhancement for Phyloviz viz plugin
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(thanks to `@bgruening <https://github.com/bgruening>`__).
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`Pull Request 4292`_
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* Use dictionary endpoints for item selection grids in page editor
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`Pull Request 4293`_
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* Submitting the galaxy jobs as a predefined system user: using
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'real_system_username'
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(thanks to `@ashvark <https://github.com/ashvark>`__).
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`Pull Request 4294`_
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* Trackster selection grids and feature fixes
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`Pull Request 4302`_
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* Update Japanese translation
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(thanks to `@manabuishii <https://github.com/manabuishii>`__).
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`Pull Request 4304`_
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@@ -272,8 +268,6 @@ Enhancements
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* Support Localization Scratchbook
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(thanks to `@manabuishii <https://github.com/manabuishii>`__).
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`Pull Request 4307`_
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* Removes saved visualizations grid mako
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`Pull Request 4311`_
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* Allow import of history archives via simple file upload
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(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
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`Pull Request 4326`_
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@@ -284,21 +278,14 @@ Enhancements
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(thanks to `@VJalili <https://github.com/VJalili>`__).
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`Pull Request 4342`_
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* CSRF protection for login, logout, and user registration.
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`Pull Request 4365`_
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* Implement default_identifier_source for outputs and sort input keys by
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default
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`Pull Request 4365`_, `Pull Request 4710`_
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* Implement ``default_identifier_source`` for tool collection outputs and sort
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input keys by default
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(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
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`Pull Request 4368`_
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* Allow removal of dataset tags in workflows
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(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
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`Pull Request 4369`_
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* Galactic Radio Telescope Update
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(thanks to `@erasche <https://github.com/erasche>`__).
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`Pull Request 4376`_
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* Remove makos of admin user grid forms
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`Pull Request 4377`_
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* Admin grid roles revision
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`Pull Request 4385`_
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* Show minimum required galaxy version in tool shed and galaxy installation
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process
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(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
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@@ -316,16 +303,12 @@ Enhancements
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`Pull Request 4403`_
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* Generalize allow_library_path_paste to allow_path_paste.
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`Pull Request 4404`_
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* Admin grid groups revision
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`Pull Request 4405`_
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* Small GRT bugfixes
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(thanks to `@erasche <https://github.com/erasche>`__).
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`Pull Request 4408`_
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* Update conda channel order to sync with Bioconda
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(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
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`Pull Request 4409`_
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* replace mako templates for tool lineage and quotas grids
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`Pull Request 4411`_
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* Fixes and enhancements for the upload API
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`Pull Request 4417`_
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* Avoid adding `(imported from API)` to workflows
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@@ -365,7 +348,7 @@ Enhancements
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* A variety of usability improvements to the workflow index page (show tags,
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allow import by drag-and-drop, and avoid unneeded page refreshs)
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(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
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`Pull Request 4476`_
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`Pull Request 4476`_, `Pull Request 4369`_
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* Use pysam instead of samtools binary when discovering BAM metadata in one
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place (samtools is still required by Galaxy)
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(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
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@@ -434,8 +417,6 @@ Enhancements
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`Pull Request 4044`_
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* Add admin app
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`Pull Request 4067`_
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* Preparation for grids mako removal
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`Pull Request 4101`_
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* Merge ShedToolLineage and StockLineage to ToolLineage
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(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
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`Pull Request 4119`_
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@@ -444,8 +425,6 @@ Enhancements
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`Pull Request 4137`_
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* Move galaxy.tools.toolbox.cache to galaxy.tools.cache.
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`Pull Request 4155`_
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* Removes mako for datasets grid
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`Pull Request 4163`_
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* Spacing convention, -> util.asbool, atribute -> attribute
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(thanks to `@bwlang <https://github.com/bwlang>`__).
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`Pull Request 4250`_
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@@ -462,11 +441,6 @@ Enhancements
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* Some formatting
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(thanks to `@VJalili <https://github.com/VJalili>`__).
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`Pull Request 4333`_
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* Replacing Edit Attributes Mako by JavaScript
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(thanks to `@bgruening <https://github.com/bgruening>`__).
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`Pull Request 4334`_
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* Admin user grid conversion
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`Pull Request 4341`_
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* Merging configure menu with main workflow view
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(thanks to `@bgruening <https://github.com/bgruening>`__).
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`Pull Request 4353`_
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@@ -531,9 +505,6 @@ Enhancements
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`Pull Request 4630`_
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* disable MacOS CI on travis
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`Pull Request 4631`_
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* Custom Builds tests
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(thanks to `@anatskiy <https://github.com/anatskiy>`__).
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`Pull Request 4641`_
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Fixes
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@@ -613,8 +584,6 @@ Fixes
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* Fix empty tabular output error when using discover_datasets.
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(thanks to `@pkrog <https://github.com/pkrog>`__).
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`Pull Request 4240`_
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* Fix shared history grid
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`Pull Request 4263`_
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* Importing old exported histories failing
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(thanks to `@cche <https://github.com/cche>`__).
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`Pull Request 4268`_
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@@ -675,8 +644,6 @@ Fixes
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`Pull Request 4445`_
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* Fix E201 errors (spaces in parens) in new memepsp datatype
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`Pull Request 4446`_
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* Fixes for advanced grid search
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`Pull Request 4449`_
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* Fix quota function name
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`Pull Request 4469`_
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* Fixes for VCF/BCF datatypes
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@@ -732,29 +699,27 @@ Fixes
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* Updated function description and fix some typos
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(thanks to `@VJalili <https://github.com/VJalili>`__).
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`Pull Request 4629`_
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* Fix data order in Custom Builds
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* Fix display of data in "custom builds" page
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(thanks to `@anatskiy <https://github.com/anatskiy>`__).
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`Pull Request 4634`_
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* do not wrap lines in the upload url fetch
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* Do not wrap lines in the upload URL fetch.
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`Pull Request 4639`_
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* BUG: Explicitly write registry.xml when creating a job for the upload tool
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* Explicitly write registry.xml when creating a job for the upload tool
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(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
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`Pull Request 4644`_
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* Fix links on workflow, history items.
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`Pull Request 4656`_
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* Fix modules resolver
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* Fix for modules resolver.
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`Pull Request 4663`_
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* Remove chatty debug statement
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* Remove overly chatty debug statement.
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`Pull Request 4671`_
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* Client side fixes for GIEs
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* Client side fixes for GIEs.
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`Pull Request 4680`_
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* Update versions of conda and conda-build
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* Update target versions of conda and conda-build
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(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
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`Pull Request 4701`_
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* Correct base route for workflows, allowing proxy-prefix to work.
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`Pull Request 4705`_
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* Append fewer characters to id_secret by default for encrypting csrf tokens.
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`Pull Request 4710`_
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* Cachebust IE require'd files (jupyter.js, etc).
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`Pull Request 4714`_
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* Add message (error and info) display to workflows display list.
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